CmoCh04G000040 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G000040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S ribosomal protein L23A
LocationCmo_Chr04 : 14777 .. 16776 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCGCAAATACCTTCATTTCTTCTTTCTAGGGCAGCAGCACTGGCAGCACTCCGCTCGTAGCCGCCGGTAACCCCTCTCTTCTTCTCTCTCTTGAATGCCCGTTCGTTTTTTCGTTTTCATCGTTATGTTTTCTTTCTGTCTTTGTGTACTCAAAACAAGAAAATATTTCCGTCTTTTACTCACAAGAATCAACCGTCTTGTTCAATTTATCTATTGCCTCAAGACTTCGGGATCTTTCCCTTAAGTCATGCCTCTTGTTTTGATTTGTTTGTTACAGTTAGAGTGTCGTGTTTTCATCCTTGATTTCGTTTCTTAGTGCTATTCTTATTGATAAATTTCCTCCCGTTTCGTTGTTTGGTTCTGGCAGGAGGGTAATTTTGATACAGGGTTTCAGCGATGGCACCTAAAGGTACGTGCGCATTGTGTTTTTGTGGTTTCAGTACGCAATGTTCGTTTATTCGAATCAGTGTGTTCCATTGTAATCTAGTACGGGCATATTACTCGAAAATTTATGATATCAACTTCTGCTCTGAGCTACATGGGTCAGTGGATTTCTATGTGCCTGGTGTTTATAGAAATTTATTTTCTTCTATTCCTATGTATACTATTTGGTGTTAGGATTTAAACATATTATATTGCTGAGAAGATTAGTTAGTTGTGACCAATACTCTCTATATTTTCCAGTATAGTTGGTACCGATCCTAGAAATTGTTAGTGCATTATGTCCTCTTTCATTTGGTTGTTTTCTCCTCGTTTGATGGAAAACAAATTGATGTTTTAAATTTGAATTGTTTTGAGAATATACTGGAAGAATGGCATCTGAGCTCTTAATGTACTGTACTAACTGGTTGCTCTTGAGCTGTTGCAATTCTTTGTTGTGTTCTATTCTAAATTGATGGTTTTGCAGCTGAAAACACCAAGAAGGCTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAGTCTGGGCCAACTTTCAAGAAGGCTAAGAAGATCAGAACATCGGTCACATTCCATCGCCCTAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGATTCCTAGACATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGTACGCATGTATGAATTTAGAAGTTGCACTTGCCACCAAAGTTTACCATCATCATTTACCTAGGTGGCATGGAACAGAAGAAATAATAGTTCGTATGATTCTTTCTAGCTTCGCCAATGGCAATACCTTAGCTATAACTGCTTGGCTGTTTGGGTTCGATAGTGCATGCCATTTTATTTTCAGATATTTTTCGTAATAAATAAAGTTAAAATTGATTTGTTAAATGCATGAAGTCTACATTGAAATTATGACTAGTGTCCTAACTATATTCTTGGTATGCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATCTAATCGGCCTAGGGGAGTTTTTTTTTTTTTTTTTTTTTCAGATTAGTTGTGACAATTTTGTTTAGATATTTGAGTGCATCTTGTGGGGACTCTTTTAGCTGCTTTTTTTTATATAATATATTGGTAATAATTAGCCACTCTGGTTGACTGAGTTCAAAATACTTGTGGAATACGTTCAAATCTTTTGTATTAGTTGTTTTCGAATACCGTTGTCACACTTCTGAATTCTTCTCTGTAAAACTGTTGACTTCTCAATATATATGGCAGTATGGCCAGTCAACTAACCCAACCCCACTAGGTGTGGTCGGTCATTAGGACCAATGGTTTAGAGATCCTTCTCAGTTTGCATGAGCTGGTCCTTCACGT

mRNA sequence

TCTCGCAAATACCTTCATTTCTTCTTTCTAGGGCAGCAGCACTGGCAGCACTCCGCTCGTAGCCGCCGGAGGGTAATTTTGATACAGGGTTTCAGCGATGGCACCTAAAGCTGAAAACACCAAGAAGGCTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAGTCTGGGCCAACTTTCAAGAAGGCTAAGAAGATCAGAACATCGGTCACATTCCATCGCCCTAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGATTCCTAGACATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATCTAATCGGCCTAGGGGAGTTTTTTTTTTTTTTTTTTTTTCAGATTAGTTGTGACAATTTTGTTTAGATATTTGAGTGCATCTTGTGGGGACTCTTTTAGCTGCTTTTTTTTATATAATATATTGGTAATAATTAGCCACTCTGGTTGACTGAGTTCAAAATACTTGTGGAATACGTTCAAATCTTTTGTATTAGTTGTTTTCGAATACCGTTGTCACACTTCTGAATTCTTCTCTGTAAAACTGTTGACTTCTCAATATATATGGCAGTATGGCCAGTCAACTAACCCAACCCCACTAGGTGTGGTCGGTCATTAGGACCAATGGTTTAGAGATCCTTCTCAGTTTGCATGAGCTGGTCCTTCACGT

Coding sequence (CDS)

ATGGCACCTAAAGCTGAAAACACCAAGAAGGCTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAGTCTGGGCCAACTTTCAAGAAGGCTAAGAAGATCAGAACATCGGTCACATTCCATCGCCCTAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGATTCCTAGACATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATCTAA
Homology
[Close]
BLAST of CmoCh04G000040 vs. Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.2e-67
Identity = 139/154 (90.26%), Postives = 145/154 (94.16%), Query Frame = 1 

Query: 1   MAP-KAENTKKADPKAQALKTAKAVKSGPT-FKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K + TKK+D KAQALKTAKAVKSG T FKK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CmoCh04G000040 vs. Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-65
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 1 

Query: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTF--KKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A+  KK D KAQALK AKAVKSG +   KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of CmoCh04G000040 vs. Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.4e-65
Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 1 

Query: 1   MAP-KAENTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KA+ +KK+DPKAQA K AKAVKSG T KK ++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA  R+KLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CmoCh04G000040 vs. Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 244.6 bits (623), Expect = 7.1e-64
Identity = 134/154 (87.01%), Postives = 139/154 (90.26%), Query Frame = 1 

Query: 1   MAP-KAENTKKADPKAQALKTAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K + TKKADPKA+ALK AKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CmoCh04G000040 vs. Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-63
Identity = 134/154 (87.01%), Postives = 139/154 (90.26%), Query Frame = 1 

Query: 1   MAP-KAENTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K + TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CmoCh04G000040 vs. TrEMBL
Match: A0A0A0KQU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264270 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.7e-72
Identity = 147/152 (96.71%), Postives = 149/152 (98.03%), Query Frame = 1 

Query: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKA+ TKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  AIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
             PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]
BLAST of CmoCh04G000040 vs. TrEMBL
Match: W9R299_9ROSA (60S ribosomal protein L23A OS=Morus notabilis GN=L484_025406 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.4e-71
Identity = 146/153 (95.42%), Postives = 149/153 (97.39%), Query Frame = 1 

Query: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKA+NTKK+DPKAQA KTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKSDPKAQASKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SA PRHKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SAPPRHKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CmoCh04G000040 vs. TrEMBL
Match: A0A0A0KNR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505240 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.4e-71
Identity = 146/153 (95.42%), Postives = 149/153 (97.39%), Query Frame = 1 

Query: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKA++TKK DPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S  PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CmoCh04G000040 vs. TrEMBL
Match: A0A0A0KS61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180850 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.8e-70
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 1 

Query: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKA+++KKADPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 60  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 119

Query: 61  SAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S  PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 120 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 179

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 180 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212

[Close]
BLAST of CmoCh04G000040 vs. TrEMBL
Match: M5X1F0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012791mg PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.9e-69
Identity = 145/154 (94.16%), Postives = 150/154 (97.40%), Query Frame = 1 

Query: 1   MAP-KAENTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KA+NTKK+DPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRP+TLKK+RNPKYPR
Sbjct: 1   MAPAKADNTKKSDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPRTLKKERNPKYPR 60

Query: 61  ISAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CmoCh04G000040 vs. TAIR10
Match: AT2G39460.1 (AT2G39460.1 ribosomal protein L23AA)

HSP 1 Score: 244.6 bits (623), Expect = 4.0e-65
Identity = 134/154 (87.01%), Postives = 139/154 (90.26%), Query Frame = 1 

Query: 1   MAP-KAENTKKADPKAQALKTAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K + TKKADPKA+ALK AKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CmoCh04G000040 vs. TAIR10
Match: AT3G55280.1 (AT3G55280.1 ribosomal protein L23AB)

HSP 1 Score: 243.0 bits (619), Expect = 1.2e-64
Identity = 134/154 (87.01%), Postives = 139/154 (90.26%), Query Frame = 1 

Query: 1   MAP-KAENTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K + TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of CmoCh04G000040 vs. NCBI nr
Match: gi|449445294|ref|XP_004140408.1| (PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 2.4e-72
Identity = 147/152 (96.71%), Postives = 149/152 (98.03%), Query Frame = 1 

Query: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKA+ TKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  AIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
             PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]
BLAST of CmoCh04G000040 vs. NCBI nr
Match: gi|703099468|ref|XP_010096658.1| (60S ribosomal protein L23A [Morus notabilis])

HSP 1 Score: 275.0 bits (702), Expect = 7.8e-71
Identity = 146/153 (95.42%), Postives = 149/153 (97.39%), Query Frame = 1 

Query: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKA+NTKK+DPKAQA KTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKSDPKAQASKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SA PRHKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SAPPRHKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CmoCh04G000040 vs. NCBI nr
Match: gi|659127083|ref|XP_008463516.1| (PREDICTED: 60S ribosomal protein L23a-like [Cucumis melo])

HSP 1 Score: 275.0 bits (702), Expect = 7.8e-71
Identity = 146/153 (95.42%), Postives = 150/153 (98.04%), Query Frame = 1 

Query: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKA++TKKADPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S  PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CmoCh04G000040 vs. NCBI nr
Match: gi|449464192|ref|XP_004149813.1| (PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 7.8e-71
Identity = 146/153 (95.42%), Postives = 149/153 (97.39%), Query Frame = 1 

Query: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKA++TKK DPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SAIPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S  PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of CmoCh04G000040 vs. NCBI nr
Match: gi|449445296|ref|XP_004140409.1| (PREDICTED: 60S ribosomal protein L23a isoform X2 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 8.6e-70
Identity = 142/145 (97.93%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 8   TKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAIPRHKL 67
           TKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS  PR+KL
Sbjct: 2   TKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKL 61

Query: 68  DQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPD 127
           DQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPD
Sbjct: 62  DQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPD 121

Query: 128 GTKKAYVRLTPDYDALDVANKIGII 153
           GTKKAYVRLTPDYDALDVANKIGII
Sbjct: 122 GTKKAYVRLTPDYDALDVANKIGII 146

The following BLAST results are available for this feature:
BLAST of CmoCh04G000040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL23A_DAUCA5.2e-6790.2660S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1[more]
RL23A_FRIAG1.7e-6588.9660S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1[more]
RL23A_TOBAC6.4e-6588.3160S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1[more]
R23A1_ARATH7.1e-6487.0160S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2[more]
R23A2_ARATH2.1e-6387.0160S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1[more]
BLAST of CmoCh04G000040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQU4_CUCSA1.7e-7296.71Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264270 PE=3 SV=1[more]
W9R299_9ROSA5.4e-7195.4260S ribosomal protein L23A OS=Morus notabilis GN=L484_025406 PE=3 SV=1[more]
A0A0A0KNR3_CUCSA5.4e-7195.42Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505240 PE=3 SV=1[more]
A0A0A0KS61_CUCSA7.8e-7094.12Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180850 PE=3 SV=1[more]
M5X1F0_PRUPE3.9e-6994.16Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012791mg PE=3 SV=1[more]
BLAST of CmoCh04G000040 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39460.14.0e-6587.01 ribosomal protein L23AA[more]
AT3G55280.11.2e-6487.01 ribosomal protein L23AB[more]
BLAST of CmoCh04G000040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445294|ref|XP_004140408.1|2.4e-7296.71PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis sativus][more]
gi|703099468|ref|XP_010096658.1|7.8e-7195.4260S ribosomal protein L23A [Morus notabilis][more]
gi|659127083|ref|XP_008463516.1|7.8e-7195.42PREDICTED: 60S ribosomal protein L23a-like [Cucumis melo][more]
gi|449464192|ref|XP_004149813.1|7.8e-7195.42PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus][more]
gi|449445296|ref|XP_004140409.1|8.6e-7097.93PREDICTED: 60S ribosomal protein L23a isoform X2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001014Ribosomal_L23/L25_CS
IPR005633Ribosomal_L23/L25_N
IPR012677Nucleotide-bd_a/b_plait_sf
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR013025Ribosomal_L25/23
IPR019985Ribosomal_L23
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G000040.1CmoCh04G000040.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 130..145
scor
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 14..61
score: 8.9
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 68..152
score: 2.5
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 70..145
score: 6.12
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 72..152
score: 22
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 72..138
score: 2.6
IPR019985Ribosomal protein L23TIGRFAMsTIGR03636TIGR03636coord: 76..152
score: 4.9
NoneNo IPR availablePANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 7..152
score: 1.5E
NoneNo IPR availablePANTHERPTHR11620:SF14SUBFAMILY NOT NAMEDcoord: 7..152
score: 1.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G000040Csa5G264270Cucumber (Chinese Long) v2cmocuB734
CmoCh04G000040Cp4.1LG01g06520Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G000040CsaV3_5G012620Cucumber (Chinese Long) v3cmocucB0862
CmoCh04G000040CsaV3_5G012820Cucumber (Chinese Long) v3cmocucB0893
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G000040Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G000040Watermelon (Charleston Gray)cmowcgB627
CmoCh04G000040Watermelon (97103) v1cmowmB736
CmoCh04G000040Cucumber (Gy14) v2cgybcmoB641
CmoCh04G000040Watermelon (97103) v2cmowmbB703