Cp4.1LG01g05480 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g05480
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	40S ribosomal protein S4
Location	Cp4.1LG01 : 630638 .. 633029 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCTTTCATGTAACATAGTACCGCCATTGTTCCAACTCCTTTCTTCGCGTCTGCAGAAGCTCTAGCTCACTCCCCGCAGCCGCCAGCGGCAATCTCACTTCCGTCGAACTTCGTTTTGAAAATATGGTCAGTGGATCTCTTTACAAACTCTCTTCTCCTTTGCTTGATATGCTATATCCATTTTCGTTATAGGTTAAGATGGTCTATACTCTTGTTTCCATCTCCATCTCCATAGTGATTTTTTTGTTTGTTATGTTTGTATCGTTATTAGGTGATTCGATAGAATGCGATTTTTTTTAATGCTATCTGTTTGAGACTTGCGAGCTCTAACCTGTAAAACCACTACAGTAAAGGGTTTGGCTCATTCATCCACGATTCTCGAACTCTCACTCTCAACTGAGTTTCCAGTGTTCTATATGTTCGCATTATTTAGGGTTTTTTTACTCTTTTTTTTTTGTGAGAATTGTTGTTCATATAGGAATTACGGGCTCAGAGATGTCTATCAACTGCCTACACGAGTTATTTTCGCGATATATTGCTCTAGAGTGTGTGGATGTGTTCTGTTCTGCTACCATCCATCATTTAAATTTAAGTTCACCATTTAATTGAACCCCAAAAACACAATTAGTTTGGTCGTCCCTCAATCCCTATTCATCCGCATATTTTTGTTAACTTTCATTTCGGTGTTCAGAATTGTTAAATTTGCGTATGAAATTAATGTCTATGGTTTTGACAGGCAAGAGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGTGAGTGAAATTTATAGTTCCCGATTCAGTTTACTTTTTCATTTAGCTTCACATTTTGCTTGTTTCTGACATCTAGTTCTACATTTTAAATACCTTTATAGGCCCCCAAACCTTCGTCTGGACCACATAAATCAAGGGAATGTCTCCCATTGATCCTTATCTTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTCATTGCAATATTGATGCAACGGCATGTATTGGTCGATGGGAAGGTTAGGACAGATAAGACCTATCCTGCTGGTTTCATGGGTATGATGATCTTAAACATTGTATTTTATACCATTGTTTCAGTTTCAATATTTATTGAGCATTTCTCATAGTTCCAGTGCCCCACCACCCTCCTAATAACTACTACCCTTATGTTGTTGTATGTCTTTGTTTTCAACTCTTCTCCCTATTCTTAATCAAAGTCAAAAGAACTTTCAATCAATTTTTTTCCCATAAGGAGTATAGTCTGAAACAAACGAGGCGGAGTATAGGGAATGCATCCTCAACTTTTCCAGCCAAATTTCCATTTGCAAACAAGATACTTAACAGTAACCCGATATACAATATGTTCCAATGATTTGATTGTCTACTCTCATCAAAATTATTATCTTAAACACATGGTATTGCTTTGTCTCTTTGTTGCTTAATATGTGATCCGTTTATTATTTTAGATACATTTTAACTATAATGCTTTTGCTTCTTTTTGTTTTAGATGTTGTGTCGATCCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACAAAAGGCCGATTCCGTTTGCACTCAATCAGGGATGAGGAGTCTAAGGTTAGTTGCTATCATTTGCATGGAGCTCTGATCTGTTATTTCTTATGACAATCCTGTTATATAGAATCTATTTTAGTATGACTTTGATATTGTTTTTGCAGTTTAAGCTCTGCAAAGTTCGCTCAGTGCAATTTGGGCAGAAGGGAATCCCTTATCTGAACACTTACGACGGACGTACAATCCGTTATCCCGACCCCTTGATCAAGGCAAACGACACCATCAAGCTGGACCTCGACTCAAACAAGATCGCTGATTTCATCAAGTTCGATGTCGGAAATGTTGTGATGGTGACCGGTGGAAGAAATCGTGGACGAGTCGGAGTGATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACTATTCACGTTCAGGATGCAACTGGGCACGAATTTGCCACTAGGCTGTGCAATGTCTTCACCATCGGGAAGGGGACGAAGCCATGGGTATCCCTTCCGAAGGGCAAGGGTATCAAACTATCCATCATTGAAGAGGCCAGGAAGAGGCTTGCCAACTCAACAGCAGCCACGGCTTAAGAGTTTGAGTATTGTAGTAGTAGTCATGATTTGAAGACAGTTTTTGTCAAAATTTTGCACTCTTTTTAGTTATTATTATGAGTAAAAGAGATCTTAAGACTGTTTAATTCTACTAGAAATGTGATGAACACACTGCTTCTATGATTTTGTTGTTGGAAAACACCGTTGGAAAACACCGTTATAATATAGACTGAACAATTTTTTTTTCAA

mRNA sequence

AAGCTTTCATGTAACATAGTACCGCCATTGTTCCAACTCCTTTCTTCGCGTCTGCAGAAGCTCTAGCTCACTCCCCGCAGCCGCCAGCGGCAATCTCACTTCCGTCGAACTTCGTTTTGAAAATATGGCAAGAGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCGTCTGGACCACATAAATCAAGGGAATGTCTCCCATTGATCCTTATCTTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTCATTGCAATATTGATGCAACGGCATGTATTGGTCGATGGGAAGGTTAGGACAGATAAGACCTATCCTGCTGGTTTCATGGATGTTGTGTCGATCCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACAAAAGGCCGATTCCGTTTGCACTCAATCAGGGATGAGGAGTCTAAGTTTAAGCTCTGCAAAGTTCGCTCAGTGCAATTTGGGCAGAAGGGAATCCCTTATCTGAACACTTACGACGGACGTACAATCCGTTATCCCGACCCCTTGATCAAGGCAAACGACACCATCAAGCTGGACCTCGACTCAAACAAGATCGCTGATTTCATCAAGTTCGATGTCGGAAATGTTGTGATGGTGACCGGTGGAAGAAATCGTGGACGAGTCGGAGTGATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACTATTCACGTTCAGGATGCAACTGGGCACGAATTTGCCACTAGGCTGTGCAATGTCTTCACCATCGGGAAGGGGACGAAGCCATGGGTATCCCTTCCGAAGGGCAAGGGTATCAAACTATCCATCATTGAAGAGGCCAGGAAGAGGCTTGCCAACTCAACAGCAGCCACGGCTTAAGAGTTTGAGTATTGTAGTAGTAGTCATGATTTGAAGACAGTTTTTGTCAAAATTTTGCACTCTTTTTAGTTATTATTATGAGTAAAAGAGATCTTAAGACTGTTTAATTCTACTAGAAATGTGATGAACACACTGCTTCTATGATTTTGTTGTTGGAAAACACCGTTGGAAAACACCGTTATAATATAGACTGAACAATTTTTTTTTCAA

Coding sequence (CDS)

ATGGCAAGAGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCGTCTGGACCACATAAATCAAGGGAATGTCTCCCATTGATCCTTATCTTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTCATTGCAATATTGATGCAACGGCATGTATTGGTCGATGGGAAGGTTAGGACAGATAAGACCTATCCTGCTGGTTTCATGGATGTTGTGTCGATCCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACAAAAGGCCGATTCCGTTTGCACTCAATCAGGGATGAGGAGTCTAAGTTTAAGCTCTGCAAAGTTCGCTCAGTGCAATTTGGGCAGAAGGGAATCCCTTATCTGAACACTTACGACGGACGTACAATCCGTTATCCCGACCCCTTGATCAAGGCAAACGACACCATCAAGCTGGACCTCGACTCAAACAAGATCGCTGATTTCATCAAGTTCGATGTCGGAAATGTTGTGATGGTGACCGGTGGAAGAAATCGTGGACGAGTCGGAGTGATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACTATTCACGTTCAGGATGCAACTGGGCACGAATTTGCCACTAGGCTGTGCAATGTCTTCACCATCGGGAAGGGGACGAAGCCATGGGTATCCCTTCCGAAGGGCAAGGGTATCAAACTATCCATCATTGAAGAGGCCAGGAAGAGGCTTGCCAACTCAACAGCAGCCACGGCTTAA

Protein sequence

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLANSTAATA

Homology

[Close]

BLAST of Cp4.1LG01g05480 vs. Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 1.9e-141
Identity = 242/264 (91.67%), Postives = 256/264 (96.97%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEESK
Sbjct: 61  VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFET+H+QD+ GHEFATRL NVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAATA 265
           GKGIKL+IIE+ARKRLA  +A  A
Sbjct: 241 GKGIKLTIIEDARKRLAAQSATPA 264

[Close]

BLAST of Cp4.1LG01g05480 vs. Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 503.1 bits (1294), Expect = 1.9e-141
Identity = 241/262 (91.98%), Postives = 256/262 (97.71%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAA 263
           GKGIKL+IIEEARKRLA+  AA
Sbjct: 241 GKGIKLTIIEEARKRLASQQAA 262

[Close]

BLAST of Cp4.1LG01g05480 vs. Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 502.7 bits (1293), Expect = 2.5e-141
Identity = 241/262 (91.98%), Postives = 255/262 (97.33%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAA 263
           GKGIKL+IIEEARKRLA+  AA
Sbjct: 241 GKGIKLTIIEEARKRLASQQAA 262

[Close]

BLAST of Cp4.1LG01g05480 vs. Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 2.8e-140
Identity = 239/261 (91.57%), Postives = 253/261 (96.93%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTA 262
           GKGIKL+IIEEARKRL+   A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Cp4.1LG01g05480 vs. Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 6.1e-140
Identity = 245/262 (93.51%), Postives = 252/262 (96.18%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH+I  +E+K
Sbjct: 61  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDA GHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAA 263
            KGIKLSIIEEARKRLA   AA
Sbjct: 241 RKGIKLSIIEEARKRLAAQNAA 262

[Close]

BLAST of Cp4.1LG01g05480 vs. TrEMBL
Match: A0A0A0KQK7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_5G212590 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 1.9e-143
Identity = 253/264 (95.83%), Postives = 260/264 (98.48%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSIRDEE+K
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAATA 265
           GKGIKL+IIEEARKRLA+ +A TA
Sbjct: 241 GKGIKLTIIEEARKRLASQSAVTA 264

[Close]

BLAST of Cp4.1LG01g05480 vs. TrEMBL
Match: A0A0A0K4K7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 2.4e-143
Identity = 251/264 (95.08%), Postives = 260/264 (98.48%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAATA 265
           GKGIKLSIIEEARKRLA+  A TA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g05480 vs. TrEMBL
Match: A0A0A0K3Y8_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G281390 PE=3 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 7.1e-143
Identity = 251/264 (95.08%), Postives = 258/264 (97.73%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKH GSFETIH+QDATGHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAATA 265
           GKGIKLSIIEEARKRLA+    TA
Sbjct: 241 GKGIKLSIIEEARKRLASQATVTA 264

[Close]

BLAST of Cp4.1LG01g05480 vs. TrEMBL
Match: A0A067K6J4_JATCU (40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_16213 PE=3 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 7.1e-143
Identity = 251/259 (96.91%), Postives = 256/259 (98.84%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRD+E+K
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANS 260
           GKGIKLSIIEEARKRLA +
Sbjct: 241 GKGIKLSIIEEARKRLATA 259

[Close]

BLAST of Cp4.1LG01g05480 vs. TrEMBL
Match: A0A0R0L9T9_SOYBN (40S ribosomal protein S4 OS=Glycine max GN=GLYMA_01G124300 PE=3 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 1.6e-142
Identity = 254/264 (96.21%), Postives = 257/264 (97.35%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEESK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATR+ NVF IGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFIIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLA--NSTAA 263
           GKGIKLSIIEEARKRLA  N T A
Sbjct: 241 GKGIKLSIIEEARKRLAAQNETVA 264

[Close]

BLAST of Cp4.1LG01g05480 vs. TAIR10
Match: AT5G58420.1 (AT5G58420.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 503.1 bits (1294), Expect = 1.1e-142
Identity = 241/262 (91.98%), Postives = 256/262 (97.71%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAA 263
           GKGIKL+IIEEARKRLA+  AA
Sbjct: 241 GKGIKLTIIEEARKRLASQQAA 262

[Close]

BLAST of Cp4.1LG01g05480 vs. TAIR10
Match: AT5G07090.1 (AT5G07090.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 502.7 bits (1293), Expect = 1.4e-142
Identity = 241/262 (91.98%), Postives = 255/262 (97.33%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAA 263
           GKGIKL+IIEEARKRLA+  AA
Sbjct: 241 GKGIKLTIIEEARKRLASQQAA 262

[Close]

BLAST of Cp4.1LG01g05480 vs. TAIR10
Match: AT2G17360.1 (AT2G17360.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 499.2 bits (1284), Expect = 1.6e-141
Identity = 239/261 (91.57%), Postives = 253/261 (96.93%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTA 262
           GKGIKL+IIEEARKRL+   A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Cp4.1LG01g05480 vs. NCBI nr
Match: gi|778701356|ref|XP_011655007.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus])

HSP 1 Score: 516.5 bits (1329), Expect = 2.7e-143
Identity = 253/264 (95.83%), Postives = 260/264 (98.48%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSIRDEE+K
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAATA 265
           GKGIKL+IIEEARKRLA+ +A TA
Sbjct: 241 GKGIKLTIIEEARKRLASQSAVTA 264

[Close]

BLAST of Cp4.1LG01g05480 vs. NCBI nr
Match: gi|659109681|ref|XP_008454823.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis melo])

HSP 1 Score: 516.2 bits (1328), Expect = 3.5e-143
Identity = 253/264 (95.83%), Postives = 259/264 (98.11%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSIRDEE+K
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAATA 265
           GKGIKL+IIEEARKRLA+  A TA
Sbjct: 241 GKGIKLTIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g05480 vs. NCBI nr
Match: gi|449465362|ref|XP_004150397.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus])

HSP 1 Score: 516.2 bits (1328), Expect = 3.5e-143
Identity = 251/264 (95.08%), Postives = 260/264 (98.48%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAATA 265
           GKGIKLSIIEEARKRLA+  A TA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Cp4.1LG01g05480 vs. NCBI nr
Match: gi|1009172315|ref|XP_015867204.1| (PREDICTED: 40S ribosomal protein S4-1 [Ziziphus jujuba])

HSP 1 Score: 515.8 bits (1327), Expect = 4.6e-143
Identity = 252/264 (95.45%), Postives = 258/264 (97.73%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKTYP+GFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEE+K
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+ NKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLEMNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKG+FETIHVQDATGHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGTFETIHVQDATGHEFATRLSNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAATA 265
           GKGIKLSIIEEARKRLA   A+TA
Sbjct: 241 GKGIKLSIIEEARKRLAAQAASTA 264

[Close]

BLAST of Cp4.1LG01g05480 vs. NCBI nr
Match: gi|659123052|ref|XP_008461463.1| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 515.4 bits (1326), Expect = 5.9e-143
Identity = 251/264 (95.08%), Postives = 260/264 (98.48%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTIGKGTKPWVS+PK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSVPK 240

Query: 241 GKGIKLSIIEEARKRLANSTAATA 265
           GKGIKLSIIEEARKRLA+  A TA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g05480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS4_SOLTU	1.9e-141	91.67	40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1	[more]
RS43_ARATH	1.9e-141	91.98	40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2	[more]
RS42_ARATH	2.5e-141	91.98	40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4	[more]
RS41_ARATH	2.8e-140	91.57	40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1	[more]
RS4_GOSHI	6.1e-140	93.51	40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g05480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQK7_CUCSA	1.9e-143	95.83	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_5G212590 PE=3 SV=1	[more]
A0A0A0K4K7_CUCSA	2.4e-143	95.08	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G282410 PE=3 SV=1	[more]
A0A0A0K3Y8_CUCSA	7.1e-143	95.08	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G281390 PE=3 SV=1	[more]
A0A067K6J4_JATCU	7.1e-143	96.91	40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_16213 PE=3 SV=1	[more]
A0A0R0L9T9_SOYBN	1.6e-142	96.21	40S ribosomal protein S4 OS=Glycine max GN=GLYMA_01G124300 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g05480 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58420.1	1.1e-142	91.98	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.1	1.4e-142	91.98	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.1	1.6e-141	91.57	Ribosomal protein S4 (RPS4A) family protein	[more]

BLAST of Cp4.1LG01g05480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701356\|ref\|XP_011655007.1\|	2.7e-143	95.83	PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus]	[more]
gi\|659109681\|ref\|XP_008454823.1\|	3.5e-143	95.83	PREDICTED: 40S ribosomal protein S4-3 [Cucumis melo]	[more]
gi\|449465362\|ref\|XP_004150397.1\|	3.5e-143	95.08	PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus]	[more]
gi\|1009172315\|ref\|XP_015867204.1\|	4.6e-143	95.45	PREDICTED: 40S ribosomal protein S4-1 [Ziziphus jujuba]	[more]
gi\|659123052\|ref\|XP_008461463.1\|	5.9e-143	95.08	PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR018199	Ribosomal_S4e_N_CS
IPR013845	Ribosomal_S4e_central_region
IPR013843	Ribosomal_S4e_N
IPR005824	KOW
IPR002942	S4_RNA-bd
IPR000876	Ribosomal_S4e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g05480.1	Cp4.1LG01g05480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000876	Ribosomal protein S4e	HAMAP	MF_00485	Ribosomal_S4e	coord: 7..238 score: 36
IPR000876	Ribosomal protein S4e	PIR	PIRSF002116	RPS4a_RPS4e	coord: 1..241 score: 1.2
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 2..264 score: 8.0E
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 47..90 score: 3.
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 42..106 score: 2.
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 42..104 score: 9
IPR005824	KOW	PFAM	PF00467	KOW	coord: 177..210 score: 2.
IPR005824	KOW	SMART	SM00739	kow_9	coord: 174..201 score: 7.
IPR013843	Ribosomal protein S4e, N-terminal	PFAM	PF08071	RS4NT	coord: 3..39 score: 1.3
IPR013845	Ribosomal protein S4e, central region	PRODOM	PD002667		coord: 87..176 score: 6.0
IPR013845	Ribosomal protein S4e, central region	PFAM	PF00900	Ribosomal_S4e	coord: 95..169 score: 6.8
IPR018199	Ribosomal protein S4e, N-terminal, conserved site	PROSITE	PS00528	RIBOSOMAL_S4E	coord: 8..22 scor
None	No IPR available	PANTHER	PTHR11581:SF11	SUBFAMILY NOT NAMED	coord: 2..264 score: 8.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g05480	CmaCh04G001360	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g05480	CmaCh04G011040	Cucurbita maxima (Rimu)	cmacpeB723
Cp4.1LG01g05480	CmoCh04G001310	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g05480	CmoCh04G011680	Cucurbita moschata (Rifu)	cmocpeB675
Cp4.1LG01g05480	Cla007237	Watermelon (97103) v1	cpewmB418
Cp4.1LG01g05480	Csa5G212590	Cucumber (Chinese Long) v2	cpecuB438
Cp4.1LG01g05480	MELO3C018378	Melon (DHL92) v3.5.1	cpemeB367
Cp4.1LG01g05480	ClCG07G004510	Watermelon (Charleston Gray)	cpewcgB410
Cp4.1LG01g05480	CSPI05G10970	Wild cucumber (PI 183967)	cpecpiB438
Cp4.1LG01g05480	Lsi04G010700	Bottle gourd (USVL1VR-Ls)	cpelsiB355
Cp4.1LG01g05480	MELO3C018378.2	Melon (DHL92) v3.6.1	cpemedB425
Cp4.1LG01g05480	CsaV3_5G010420	Cucumber (Chinese Long) v3	cpecucB0542
Cp4.1LG01g05480	Bhi07G000473	Wax gourd	cpewgoB0554
Cp4.1LG01g05480	CsGy5G008310	Cucumber (Gy14) v2	cgybcpeB647
Cp4.1LG01g05480	Carg00204	Silver-seed gourd	carcpeB0939
Cp4.1LG01g05480	Carg18387	Silver-seed gourd	carcpeB0130

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g05480	Cp4.1LG01g11440	Cucurbita pepo (Zucchini)	cpecpeB374

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g05480	Cucumber (Chinese Long) v3	cpecucB0566
Cp4.1LG01g05480	Cucurbita pepo (Zucchini)	cpecpeB401
Cp4.1LG01g05480	Cucumber (Gy14) v2	cgybcpeB795
Cp4.1LG01g05480	Melon (DHL92) v3.6.1	cpemedB477
Cp4.1LG01g05480	Silver-seed gourd	carcpeB1387