Carg18387 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18387
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S4
Location	Cucurbita_argyrosperma_scaffold_106 : 463186 .. 465871 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATAACCTCCATTCTACTCTGTTGGCTTCAAGCTTTCATGTAACATAGTACCGCCATTGGACCAACTCCTTTCTTCGCGTCTGCAGAAGCTCTAGCTCACTCCCCGCAGCCGCCAGCGGCAATCTCACTTCCGTTGAACTTCGTTTTGGAAATATGGTCAGTGGATCTCTCTACAAACTCTCTTCTCCTTTGCTTGATATGATATATCCATTTTCGTTCTAGGTTAAGATGGTCTATACTCTTGTTTCCATATCCATAGTGATTTTTTTGTTTGTTATGTTTGTATCGTTATTAGGTGATTCGATAGCATTCGATTTTTTTAATGCTATCTGTTTGAGACTTGCGAGCTCTAACCTGTAAAACCACTACAGTAAAGGGTTCGGCTCATTCATCCACGATTCTCGAACTCTCACTCTCAACTGGGTTTCCAGTGTTCTATATGTTCGCATTATTTAGGTTTTTTTTTTTTTTTTTTTACTCTTTTTTTGTGAGAATTGTTGTTCGTATAGGAATTACGGGCTCAGAGATGTCTATCAACTACCTACACGAGTTATTTTCGTGATATATTGCCATAGAGTGTGTGGATGAGTTCTGTTCTGCCATCCATCATGTAAATTTAAGTTCACCATTTAATTGAATCCCAAAAACACAATTAGTTTGGTCGTCCCTCAATCCCTATTCATCCGCATATTTTTGTTAACTTTCATTTTGGTGTTCAGAATTGCTAAACTTGCGTATGAAATTAATGTCTATGGTTTTGACAGGCAAGAGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGTGAGTGAAATTTATAGTTCCCGATTCAGTTTACTTTTTCATTTAGCTTCACATTTTGCTTGTTTCTGACATCTAGTTCTACCTTTTAAATACCTTTATAGGCCCCCAAACCTTCATCTGGACCACATAAATCAAGGGAATGTCTCCCATTGATCCTTATCTTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTCATTGCAATATTGATGCAACGACATGTATTGGTCGATGGGAAGGTTAGGACAGATAAGACCTATCCTGCTGGATTCATGGGTATGATCACCTCAAAAATTGTATTTATTGCCATTGTTTCGGTTTCAATATTTATTGAGCATTCTCTTAATTCCCATTATTTCGCAGTTGTTAGAGTAGCTGTCTAAATTGAACTTGATTCATTTCTTTTATATGGGGTATTGTCTTCCATAAAAGAAAATGTGGGCTCTTCTTTTAGTTCCAGTGCTCCCCCTCACCCTCCTAATTATCTACTACCCTTATGTTGTTGTATGTCTTTGTTTTCCACTCCTCTCCCTATTCTTCTTAATCAAAGTCAAAAGAACTTTCAATCTATTCTTTTCCCATAAGAAGTATTGTCTGAAACAAATGAGGTGGAGTATATGGAATGCATCTTCAACCTTTCCAGTCAAATTTCCATTTGCAAACAGGATACTTAACAGTAACCCAATATACAATATGTTCCATTGATTTGATTGTCTACTCTCATCAATATTATTATCTTAGCTTTGTCTCTTTGTTGCTTAATATGTGATCCGTTTATTATTTTAGATACATTTTAACTATAATGCTTTTGCTTCTTTTTGTTTTAGATGTTGTGTCGATCCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACGAAAGGCCGATTCCGTTTGCACTCAATCAGGGATGAGGAGTCTAAGGTTAGTTGCTGTCACTTGCATGGGGCTCTGATCTGTTATTTCTTATGACAATCCTGTTGTATGAAATCTATTTTAGTATGACTCTGATATTGTTTTTGCAGTTTAAGCTCTGCAAAGTTCGCTCAGTGCAATTTGGGCAGAAGGGAATCCCTTACCTGAACACTTACGACGGACGTACAATCCGTTATCCCGACCCCTTGATCAAGGCAAACGACACCATCAAGCTGGACCTCGACTCAAACAAGATCGCTGATTTCATCAAGTTTGATGTCGGAAATGTTGTGATGGTGACCGGTGGAAGAAATCGTGGACGAGTCGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACTATTCACGTTCAGGATGCAACTGGGCACGAATTTGCCACTAGGTTGTGCAATGTCTTCACCATCGGGAAGGGGACGAAGCCATGGGTATCCCTTCCCAAGGGCAAGGGTATCAAACTATCCATCATTGAAGAGGCCAGGAAGAGGCTTGCCAGCCAAACCGCAGCCACGGCTTAAGAGTTTGAGTACTGTAGTAGTAGTCATGATTTGAAGACAGTTTTTGTCAAATTTTTGCACTCTTTTTAATTATTATTACGAGTAAAATAGATCTTAAGACTATTTAATTCTACTAGAAATGTGATGAACACACTGCCTTCTATGATTTTGTTGTTGGAAAACACCGTTATAATATAGACTGAACACATTTTTTTTTCCCATTGAGTATCATGTAGTCTGTTAAATTTCTCCATTTTTCTAATATGGAGATGAAAATCTTATTATTTTATGTTTGAAATTTTTTTAAAAGAAAAAAATGAACAAGGAATTACATTTTATATTAGTATATTTTTTTAGGATTTTTTTTTCATGAAGTATATGATAATATTTATAAAT

mRNA sequence

CAAATAACCTCCATTCTACTCTGTTGGCTTCAAGCTTTCATGTAACATAGTACCGCCATTGGACCAACTCCTTTCTTCGCGTCTGCAGAAGCTCTAGCTCACTCCCCGCAGCCGCCAGCGGCAATCTCACTTCCGTTGAACTTCGTTTTGGAAATATGGCAAGAGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCATCTGGACCACATAAATCAAGGGAATGTCTCCCATTGATCCTTATCTTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTCATTGCAATATTGATGCAACGACATGTATTGGTCGATGGGAAGGTTAGGACAGATAAGACCTATCCTGCTGGATTCATGGATGTTGTGTCGATCCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACGAAAGGCCGATTCCGTTTGCACTCAATCAGGGATGAGGAGTCTAAGTTTAAGCTCTGCAAAGTTCGCTCAGTGCAATTTGGGCAGAAGGGAATCCCTTACCTGAACACTTACGACGGACGTACAATCCGTTATCCCGACCCCTTGATCAAGGCAAACGACACCATCAAGCTGGACCTCGACTCAAACAAGATCGCTGATTTCATCAAGTTTGATGTCGGAAATGTTGTGATGGTGACCGGTGGAAGAAATCGTGGACGAGTCGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACTATTCACGTTCAGGATGCAACTGGGCACGAATTTGCCACTAGGTTGTGCAATGTCTTCACCATCGGGAAGGGGACGAAGCCATGGGTATCCCTTCCCAAGGGCAAGGGTATCAAACTATCCATCATTGAAGAGGCCAGGAAGAGGCTTGCCAGCCAAACCGCAGCCACGGCTTAAGAGTTTGAGTACTGTAGTAGTAGTCATGATTTGAAGACAGTTTTTGTCAAATTTTTGCACTCTTTTTAATTATTATTACGAGTAAAATAGATCTTAAGACTATTTAATTCTACTAGAAATGTGATGAACACACTGCCTTCTATGATTTTGTTGTTGGAAAACACCGTTATAATATAGACTGAACACATTTTTTTTTCCCATTGAGTATCATGTAGTCTGTTAAATTTCTCCATTTTTCTAATATGGAGATGAAAATCTTATTATTTTATGTTTGAAATTTTTTTAAAAGAAAAAAATGAACAAGGAATTACATTTTATATTAGTATATTTTTTTAGGATTTTTTTTTCATGAAGTATATGATAATATTTATAAAT

Coding sequence (CDS)

ATGGCAAGAGGGTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCATCTGGACCACATAAATCAAGGGAATGTCTCCCATTGATCCTTATCTTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTCATTGCAATATTGATGCAACGACATGTATTGGTCGATGGGAAGGTTAGGACAGATAAGACCTATCCTGCTGGATTCATGGATGTTGTGTCGATCCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACGAAAGGCCGATTCCGTTTGCACTCAATCAGGGATGAGGAGTCTAAGTTTAAGCTCTGCAAAGTTCGCTCAGTGCAATTTGGGCAGAAGGGAATCCCTTACCTGAACACTTACGACGGACGTACAATCCGTTATCCCGACCCCTTGATCAAGGCAAACGACACCATCAAGCTGGACCTCGACTCAAACAAGATCGCTGATTTCATCAAGTTTGATGTCGGAAATGTTGTGATGGTGACCGGTGGAAGAAATCGTGGACGAGTCGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACTATTCACGTTCAGGATGCAACTGGGCACGAATTTGCCACTAGGTTGTGCAATGTCTTCACCATCGGGAAGGGGACGAAGCCATGGGTATCCCTTCCCAAGGGCAAGGGTATCAAACTATCCATCATTGAAGAGGCCAGGAAGAGGCTTGCCAGCCAAACCGCAGCCACGGCTTAA

Protein sequence

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLASQTAATA

Homology

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BLAST of Carg18387 vs. NCBI nr
Match: XP_022996364.1 (40S ribosomal protein S4-3-like [Cucurbita maxima])

HSP 1 Score: 535.4 bits (1378), Expect = 1.1e-148
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKLSIIEEARKRLASQTAATA
Sbjct: 241 GKGIKLSIIEEARKRLASQTAATA 264

[Close]

BLAST of Carg18387 vs. NCBI nr
Match: XP_022941875.1 (40S ribosomal protein S4-3-like [Cucurbita moschata])

HSP 1 Score: 533.9 bits (1374), Expect = 3.1e-148
Identity = 263/264 (99.62%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFG+KGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGRKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKLSIIEEARKRLASQTAATA
Sbjct: 241 GKGIKLSIIEEARKRLASQTAATA 264

[Close]

BLAST of Carg18387 vs. NCBI nr
Match: XP_023543131.1 (40S ribosomal protein S4-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 532.3 bits (1370), Expect = 9.1e-148
Identity = 262/264 (99.24%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKLSIIEEARKRLA+ TAATA
Sbjct: 241 GKGIKLSIIEEARKRLANSTAATA 264

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BLAST of Carg18387 vs. NCBI nr
Match: XP_022976936.1 (40S ribosomal protein S4-3-like [Cucurbita maxima])

HSP 1 Score: 527.3 bits (1357), Expect = 2.9e-146
Identity = 257/264 (97.35%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VISILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKLSIIEEARKRLASQ A TA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Carg18387 vs. NCBI nr
Match: XP_022932544.1 (40S ribosomal protein S4-3-like [Cucurbita moschata])

HSP 1 Score: 526.2 bits (1354), Expect = 6.5e-146
Identity = 256/264 (96.97%), Postives = 262/264 (99.24%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VISILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKLSIIEEARKRLASQ + TA
Sbjct: 241 GKGIKLSIIEEARKRLASQASVTA 264

[Close]

BLAST of Carg18387 vs. TAIR10
Match: AT5G58420.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 506.1 bits (1302), Expect = 1.3e-143
Identity = 243/262 (92.75%), Postives = 257/262 (98.09%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAA 263
           GKGIKL+IIEEARKRLASQ AA
Sbjct: 241 GKGIKLTIIEEARKRLASQQAA 262

[Close]

BLAST of Carg18387 vs. TAIR10
Match: AT5G07090.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 505.8 bits (1301), Expect = 1.7e-143
Identity = 243/262 (92.75%), Postives = 256/262 (97.71%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAA 263
           GKGIKL+IIEEARKRLASQ AA
Sbjct: 241 GKGIKLTIIEEARKRLASQQAA 262

[Close]

BLAST of Carg18387 vs. TAIR10
Match: AT2G17360.1 (Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 502.3 bits (1292), Expect = 1.8e-142
Identity = 240/261 (91.95%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Carg18387 vs. Swiss-Prot
Match: sp|Q8VYK6|RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2)

HSP 1 Score: 506.1 bits (1302), Expect = 2.3e-142
Identity = 243/262 (92.75%), Postives = 257/262 (98.09%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAA 263
           GKGIKL+IIEEARKRLASQ AA
Sbjct: 241 GKGIKLTIIEEARKRLASQQAA 262

[Close]

BLAST of Carg18387 vs. Swiss-Prot
Match: sp|P49204|RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4)

HSP 1 Score: 505.8 bits (1301), Expect = 3.0e-142
Identity = 243/262 (92.75%), Postives = 256/262 (97.71%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAA 263
           GKGIKL+IIEEARKRLASQ AA
Sbjct: 241 GKGIKLTIIEEARKRLASQQAA 262

[Close]

BLAST of Carg18387 vs. Swiss-Prot
Match: sp|P46300|RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 3.0e-142
Identity = 243/264 (92.05%), Postives = 258/264 (97.73%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEESK
Sbjct: 61  VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFET+H+QD+ GHEFATRL NVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKL+IIE+ARKRLA+Q+A  A
Sbjct: 241 GKGIKLTIIEDARKRLAAQSATPA 264

[Close]

BLAST of Carg18387 vs. Swiss-Prot
Match: sp|Q93VH9|RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 3.3e-141
Identity = 240/261 (91.95%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEE+K
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Carg18387 vs. Swiss-Prot
Match: sp|P46299|RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 7.4e-141
Identity = 246/262 (93.89%), Postives = 254/262 (96.95%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH+I  +E+K
Sbjct: 61  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDA GHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAA 263
            KGIKLSIIEEARKRLA+Q AA
Sbjct: 241 RKGIKLSIIEEARKRLAAQNAA 262

[Close]

BLAST of Carg18387 vs. TrEMBL
Match: tr|A0A0A0KQK7|A0A0A0KQK7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_5G212590 PE=3 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 5.3e-144
Identity = 255/264 (96.59%), Postives = 261/264 (98.86%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSIRDEE+K
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKL+IIEEARKRLASQ+A TA
Sbjct: 241 GKGIKLTIIEEARKRLASQSAVTA 264

[Close]

BLAST of Carg18387 vs. TrEMBL
Match: tr|A0A1S3BZK5|A0A1S3BZK5_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103495134 PE=3 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 6.9e-144
Identity = 255/264 (96.59%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSIRDEE+K
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKL+IIEEARKRLASQ A TA
Sbjct: 241 GKGIKLTIIEEARKRLASQAAVTA 264

[Close]

BLAST of Carg18387 vs. TrEMBL
Match: tr|A0A0A0K4K7|A0A0A0K4K7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 6.9e-144
Identity = 253/264 (95.83%), Postives = 261/264 (98.86%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKLSIIEEARKRLASQ A TA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Carg18387 vs. TrEMBL
Match: tr|A0A1S3CEH5|A0A1S3CEH5_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500053 PE=3 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 1.2e-143
Identity = 253/264 (95.83%), Postives = 261/264 (98.86%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTIGKGTKPWVS+PK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSVPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKLSIIEEARKRLASQ A TA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Carg18387 vs. TrEMBL
Match: tr|A0A1S3CEL9|A0A1S3CEL9_CUCME (40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500084 PE=3 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 1.2e-143
Identity = 252/264 (95.45%), Postives = 261/264 (98.86%), Query Frame = 0


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMD++SIPKTNENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNT+DGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQTAATA 265
           GKGIKLSIIEEARKRLASQ A TA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

The following BLAST results are available for this feature:

BLAST of Carg18387 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022996364.1	1.1e-148	100.00	40S ribosomal protein S4-3-like [Cucurbita maxima]	[more]
XP_022941875.1	3.1e-148	99.62	40S ribosomal protein S4-3-like [Cucurbita moschata]	[more]
XP_023543131.1	9.1e-148	99.24	40S ribosomal protein S4-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022976936.1	2.9e-146	97.35	40S ribosomal protein S4-3-like [Cucurbita maxima]	[more]
XP_022932544.1	6.5e-146	96.97	40S ribosomal protein S4-3-like [Cucurbita moschata]	[more]

BLAST of Carg18387 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58420.1	1.3e-143	92.75	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.1	1.7e-143	92.75	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.1	1.8e-142	91.95	Ribosomal protein S4 (RPS4A) family protein	[more]

BLAST of Carg18387 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VYK6\|RS43_ARATH	2.3e-142	92.75	40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2	[more]
sp\|P49204\|RS42_ARATH	3.0e-142	92.75	40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4	[more]
sp\|P46300\|RS4_SOLTU	3.0e-142	92.05	40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1	[more]
sp\|Q93VH9\|RS41_ARATH	3.3e-141	91.95	40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1	[more]
sp\|P46299\|RS4_GOSHI	7.4e-141	93.89	40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1	[more]

BLAST of Carg18387 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQK7\|A0A0A0KQK7_CUCSA	5.3e-144	96.59	40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_5G212590 PE=3 SV=1	[more]
tr\|A0A1S3BZK5\|A0A1S3BZK5_CUCME	6.9e-144	96.59	40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103495134 PE=3 SV=1	[more]
tr\|A0A0A0K4K7\|A0A0A0K4K7_CUCSA	6.9e-144	95.83	40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1	[more]
tr\|A0A1S3CEH5\|A0A1S3CEH5_CUCME	1.2e-143	95.83	40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500053 PE=3 SV=1	[more]
tr\|A0A1S3CEL9\|A0A1S3CEL9_CUCME	1.2e-143	95.45	40S ribosomal protein S4 OS=Cucumis melo OX=3656 GN=LOC103500084 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR018199	Ribosomal_S4e_N_CS
IPR013845	Ribosomal_S4e_central_region
IPR014722	Rib_L2_dom2
IPR032277	40S_S4_C
IPR038237	Ribosomal_S4e_central_sf
IPR013843	Ribosomal_S4e_N
IPR000876	Ribosomal_S4e
IPR005824	KOW
IPR002942	S4_RNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18387-RA	Carg18387-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 42..106 e-value: 2.9E-5 score: 33.5
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 47..90 e-value: 3.4E-7 score: 29.8
IPR002942	RNA-binding S4 domain	PROSITE	PS50889	S4	coord: 42..104 score: 9.171
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 51..112 e-value: 6.07817E-6 score: 41.8514
IPR005824	KOW	SMART	SM00739	kow_9	coord: 174..201 e-value: 7.7E-4 score: 28.8
IPR005824	KOW	PFAM	PF00467	KOW	coord: 177..210 e-value: 2.5E-6 score: 27.1
IPR000876	Ribosomal protein S4e	PIRSF	PIRSF002116	RPS4a_RPS4e	coord: 1..241 e-value: 1.5E-97 score: 323.5
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 1..262
IPR000876	Ribosomal protein S4e	HAMAP	MF_00485	Ribosomal_S4e	coord: 7..238 score: 36.296
None	No IPR available	GENE3D	G3DSA:3.10.290.40		coord: 1..117 e-value: 2.5E-61 score: 206.7
None	No IPR available	PANTHER	PTHR11581:SF11	SUBFAMILY NOT NAMED	coord: 1..262
None	No IPR available	CDD	cd06087	KOW_RPS4	coord: 175..229 e-value: 1.23462E-29 score: 106.446
IPR013843	Ribosomal protein S4e, N-terminal	PFAM	PF08071	RS4NT	coord: 3..39 e-value: 1.8E-19 score: 69.5
IPR038237	Ribosomal protein S4e, central domain superfamily	GENE3D	G3DSA:2.40.50.740		coord: 122..172 e-value: 3.1E-30 score: 105.7
IPR032277	40S ribosomal protein S4, C-terminal domain	PFAM	PF16121	40S_S4_C	coord: 212..258 e-value: 5.0E-26 score: 90.0
IPR014722	Ribosomal protein L2, domain 2	GENE3D	G3DSA:2.30.30.30		coord: 175..245 e-value: 2.8E-38 score: 131.6
IPR013845	Ribosomal protein S4e, central region	PFAM	PF00900	Ribosomal_S4e	coord: 95..169 e-value: 7.4E-36 score: 121.8
IPR013845	Ribosomal protein S4e, central region	PRODOM	PD002667		coord: 87..176 e-value: 6.0E-46 score: 465.0
IPR018199	Ribosomal protein S4e, N-terminal, conserved site	PROSITE	PS00528	RIBOSOMAL_S4E	coord: 8..22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18387	Cla007237	Watermelon (97103) v1	carwmB0086
Carg18387	Csa5G212590	Cucumber (Chinese Long) v2	carcuB0098
Carg18387	MELO3C018378	Melon (DHL92) v3.5.1	carmeB0091
Carg18387	ClCG07G004510	Watermelon (Charleston Gray)	carwcgB0090
Carg18387	CSPI05G11030	Wild cucumber (PI 183967)	carcpiB0102
Carg18387	CmaCh04G001360	Cucurbita maxima (Rimu)	carcmaB0115
Carg18387	CmaCh04G011040	Cucurbita maxima (Rimu)	carcmaB0116
Carg18387	CmoCh04G001310	Cucurbita moschata (Rifu)	carcmoB0123
Carg18387	CmoCh04G011680	Cucurbita moschata (Rifu)	carcmoB0124
Carg18387	Lsi04G010700	Bottle gourd (USVL1VR-Ls)	carlsiB081
Carg18387	Cp4.1LG01g11440	Cucurbita pepo (Zucchini)	carcpeB0131
Carg18387	Cp4.1LG01g05480	Cucurbita pepo (Zucchini)	carcpeB0130
Carg18387	CsGy5G008310	Cucumber (Gy14) v2	carcgybB0098
Carg18387	MELO3C018378.2	Melon (DHL92) v3.6.1	carmedB0092
Carg18387	CsaV3_5G010420	Cucumber (Chinese Long) v3	carcucB0105
Carg18387	Cla97C07G132970	Watermelon (97103) v2	carwmbB0091
Carg18387	Bhi07G000473	Wax gourd	carwgoB0103

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18387	Carg00204	Silver-seed gourd	carcarB099

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18387	Silver-seed gourd	carcarB097
Carg18387	Cucurbita moschata (Rifu)	carcmoB0121
Carg18387	Cucurbita pepo (Zucchini)	carcpeB0132