Cp4.1LG01g05200 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g05200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat superfamily protein
LocationCp4.1LG01 : 878963 .. 882466 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTAGCCGCTAGCTCCAATTTTCCGTTTCGTTCGTTCCCCAAAGAACGATCATCATCCAAAGCTTGTGCAGGTAGAGTTTTTGTATGTCTCCAGCTTCGGTGCGCTTTGTTTAATTCCTGTAGTTGTTTCGCATATCTTCTCAGCCGTAGAGCCCTTCTTTATCCTGAATGAATCAACCCCTTCGGCCACAGCTCAAATTCTTTATTATACTTAATACCCAATACATTAAGCGCTGAAATTTGAAAAATCTGATGCTTGCTTACCGTGGAAGCTCAACTGGGTTCGATGCCCTCGTGCCGAAGGTAAGCAGGAAACTTCCAACTTCGCCAATTTCGTTTTAACAATATCTAAGTGTTTAATCACATAATTTTCCCATTTCCCTTGTAGAAAGTTTGCATTTACAATTACAACAAATTGGCATTTAGAGCTGCCAGTGTCAAGTGTGTCCACAAGCAAGCTGCGCAGTCGCTTACAAGTTCCACCACAGCTGAGAGGTGTTCTTGTTTTTCTTCTCTAATATTGCTTTCTGATTTTGCTTTCAACCCCAGAACTTTGATTTTGATGTTGCTTTGATTAAATATAGACGTATTGTTAAGAAGAAGGTTGGGAAGGAGGCCCACCATTTATGGAAGAAAAGAGATTCTGCTGGCTCTGGCCAAAAAGCTCTGAATCTTGTTAGAATTGTAAGCTGCATTTCGTTGAATCTTCTCTCTTAGTGCCTTTCTAATATTGAGAGGAAACAATGAGAATGTTTAACATCTTGTAGGTTTCCCAATGCCCCAATGAGAAAGAAGCTGTATATGGAGAATTGAATAAGTGGATAGCTTGGGAGACGGAGTTTCCATTGATTGCAGCTTCTAAGGCTTTAAGAATACTGAGGAAGAGAAGTCAATGGAAGCGCGTCATTCAAGTATGAAAAAGTATACTCTTACTCATTGTCCTATATTTTTATGTATGTATTTAATATAGACTTATATTGACTTTGTACAACTAGTGTCTAGTGTCACGGGGTTGTGACATCTAGCTCATATCTATTGTGCTAACAAGTGTTCAATACGTGTCCAACAAGTGTTGGAATGTTTGAGTGTCTGAAACGGACAAGCTAGCCAAACTAAACTATTCATTGTTAGTTTTGCATTTATTTGATAAGTTGTGGTTTGTTCAGTTTTTATATTGAAGTTTGATCTTGAAACTTGGTCATTTAGACTTCCTTGTGCTTAAAATATGACTCAAGAAACAAGACAACACTTCGGATTTGGTTGATGCATCAAATTTTATTATTCCTGTTTTAGATTTAGCTTTATGGACAGAGAACTCGTGGTTGTTGGTTCCATAATTGGGAATGATGAAACAGCAATGAGTTCTTATCTTTGAGAAAAATGTTTGTCGAAATATAACACCGAACTACTTCTGGCATTGGAAGCTTCAGTGTTGGACTTGCAAGTTACTTGTGAGATTGGCATGTGAAAGGATCATCTCTGATTAGCCTAGTTCGGTAACATGGGCTCGTGACCTGAGTGGGGGTTCTCACTGGTTTGAATGGGTGGAGGGGTTGATGTTGGAACCCTTCGATTAGGGAAGGTTCGAATTTAAAAAGATTATCTCAGATTAACAAGAAAAGTTGGAAGAAGAAAATCTGTTGTCTTTTGCCTATGTTGGTTGCTTAAAGTTCTTCCTTTTCCGTTGTAAAGTTTGAGCTTATAAATATTTATGAAGAGGTTTCTGTATACAATCAATGCTTCTTATTACTCAGGTGGCAAAGTGGATGCTAAGCAAGGGTCAAGGAGCCACAATGGGTACCTATGACACTCTTCTTCTAGCATTTGATATGGACAAGAGGGTGGATGAAGCCGAATCTTTATGGAACATGATTTTGCATGCACATACTCGTTCCATCTCTAAGCGACTGTTTTCTAGGATGATCTCTTTATATGACCATCATGACTTGCAAGATAAGATTATTGAGGTATTGGGAGTGGGGACTCTCACGTCTCGCTTGTACCACCCTATGCAATCTTCTCTTCATACCATATCAATGACCTGCTTCAATTTTTTCCATCTCTTGGTACAGATATTTGCAGACATGGAAGAGTTGGGAGTAAGGCCAGATGAAGACACAGTTAGAAGAGTAGCCCACGCCTTTCGAAAACTAGGTCAAGAAGAAAACGGGAAACTGGTCTATAAAAGATATGGCTGCAAATGGAAATACATACATTTCAAGGGTGAGAGGGTTAGAGTGAGAAGAGATGGATGGGATGAAGATGATAAATGAACCAGACTGAAAGAAAAGAATTGAAGGGCAGAGACTCCTGAACTTCAACATGGATTAGCTCACAAGGTATTTATCTACCAATTGCCGTTAATTATATGCGTTTTATTTGCAGTCTATTTTTCTCCTCTGTTCTATTTGAACATCTTAGCAGTAGTAACAGAGATAATGCAAACACTGTAATATATTAATATGATATGAAAAAGGTAGTGTATATGTTAATCAAGGAATTTATCTATCATGTTTGGAGCAAGTTTGTTTTCTAGAACCATGGTTCTCTTTTAGCTTGAGGAGGTATTGTAAGAGCCAAAGCCCACCGCTAGCAGATATTGTTCTCTTTGGATTTTCTCTTTCGGGCTTCCTCTCAAGGTTTTTAAAACACATCTATTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCCCAACCGATGTGAGATCTCACAATCCACCTCCCTACAGGGCCCAGGGTCCTCGTTGGCACTCGTTTCCTTCTCCAATCGATGTGGGACCCCCAATCCACCCCTCTGGGGCCTAGCGTCCTCGTTGGCATTCGTTCCCTTCTCCAATCGATGTGAGACCCCCCAATCCACCCCTCTTTGGGGCCCAGCGTCCTTGCTGGCACACCGCCTCGTGTTCACCTCCTTCAGGGCTCAGCCTCCTTGCTGGCACATCGCCTGGTGTCTGACTCTAATTCCATTTGGAACAGCCTAAGCCCATCGTTAGCAAATATTGTCCTCTTTGAGTTTCCCCTCAAGATTTTTAAAAACGCGTCTGCTAGGGAGATGTTTCCACACTCTTATAAAGAATGTTTCGTTCTCTTCCCCAACCGATGTGGGACCTAAGCAGCAAATGGAGTCAGAATCAAGTAGATTTCATGGGGATGAACTACCCGTTTGTCAAATCAGATAAGATTTGCACATCTTTTGCTTTTGCCTACGTATGGAAACAGTAGAAAAGGTATAGTGAAGGTTGAGTAAATTTCACATCAAGCTTTAAATCTTCATTCTGAAGCAACAGTTGTAGACAAGCTTTTGGTCAAATCACTGCTAGGATCATGGAAAAAAAGAAAAGAAAAGTGGAGTGAGTATAGTTAGGTAAGATAGATTTGAACAATCCCAACTAACTCAATAGATGACATAATATCATACTTTTGGTCGTGAAGAGTAGATTTTATGGTTGAGTTGCACCAAGTAGAGTGAATAGCCTTTAAGGACAGCAGC

mRNA sequence

GCTAGCCGCTAGCTCCAATTTTCCGTTTCGTTCGTTCCCCAAAGAACGATCATCATCCAAAGCTTGTGCAGGTAGAGTTTTTGTATGTCTCCAGCTTCGGTGCGCTTTGTTTAATTCCTGTAGTTGTTTCGCATATCTTCTCAGCCGTAGAGCCCTTCTTTATCCTGAATGAATCAACCCCTTCGGCCACAGCTCAAATTCTTTATTATACTTAATACCCAATACATTAAGCGCTGAAATTTGAAAAATCTGATGCTTGCTTACCGTGGAAGCTCAACTGGGTTCGATGCCCTCGTGCCGAAGTTTGCATTTACAATTACAACAAATTGGCATTTAGAGCTGCCAGTGTCAAGTGTGTCCACAAGCAAGCTGCGCAGTCGCTTACAAGTTCCACCACAGCTGAGAGACGTATTGTTAAGAAGAAGGTTGGGAAGGAGGCCCACCATTTATGGAAGAAAAGAGATTCTGCTGGCTCTGGCCAAAAAGCTCTGAATCTTGTTAGAATTGTTTCCCAATGCCCCAATGAGAAAGAAGCTGTATATGGAGAATTGAATAAGTGGATAGCTTGGGAGACGGAGTTTCCATTGATTGCAGCTTCTAAGGCTTTAAGAATACTGAGGAAGAGAAGTCAATGGAAGCGCGTGGCAAAGTGGATGCTAAGCAAGGGTCAAGGAGCCACAATGGGTACCTATGACACTCTTCTTCTAGCATTTGATATGGACAAGAGGGTGGATGAAGCCGAATCTTTATGGAACATGATTTTGCATGCACATACTCGTTCCATCTCTAAGCGACTGTTTTCTAGGATGATCTCTTTATATGACCATCATGACTTGCAAGATAAGATTATTGAGATATTTGCAGACATGGAAGAGTTGGGAGTAAGGCCAGATGAAGACACAGTTAGAAGAGTAGCCCACGCCTTTCGAAAACTAGGTCAAGAAGAAAACGGGAAACTGGTCTATAAAAGATATGGCTGCAAATGGAAATACATACATTTCAAGGGTGAGAGGGTTAGAGTGAGAAGAGATGGATGGGATGAAGATGATAAATGAACCAGACTGAAAGAAAAGAATTGAAGGGCAGAGACTCCTGAACTTCAACATGGATTAGCTCACAAGGTATTTATCTACCAATTGCCGTTAATTATATGCGTTTTATTTGCAGTCTATTTTTCTCCTCTGTTCTATTTGAACATCTTAGCAGTAGTAACAGAGATAATGCAAACACTGTAATATATTAATATGATATGAAAAAGGTAGTGTATATGTTAATCAAGGAATTTATCTATCATGTTTGGAGCAAGTTTGTTTTCTAGAACCATGGTTCTCTTTTAGCTTGAGGAGGTATTGTAAGAGCCAAAGCCCACCGCTAGCAGATATTGTTCTCTTTGGATTTTCTCTTTCGGGCTTCCTCTCAAGGTTTTTAAAACACATCTATTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCCCAACCGATGTGAGATCTCACAATCCACCTCCCTACAGGGCCCAGGGTCCTCGTTGGCACTCGTTTCCTTCTCCAATCGATGTGGGACCCCCAATCCACCCCTCTGGGGCCTAGCGTCCTCGTTGGCATTCGTTCCCTTCTCCAATCGATGTGAGACCCCCCAATCCACCCCTCTTTGGGGCCCAGCGTCCTTGCTGGCACACCGCCTCGTGTTCACCTCCTTCAGGGCTCAGCCTCCTTGCTGGCACATCGCCTGGTGTCTGACTCTAATTCCATTTGGAACAGCCTAAGCCCATCGTTAGCAAATATTGTCCTCTTTGAGTTTCCCCTCAAGATTTTTAAAAACGCGTCTGCTAGGGAGATGTTTCCACACTCTTATAAAGAATGTTTCGTTCTCTTCCCCAACCGATGTGGGACCTAAGCAGCAAATGGAGTCAGAATCAAGTAGATTTCATGGGGATGAACTACCCGTTTGTCAAATCAGATAAGATTTGCACATCTTTTGCTTTTGCCTACGTATGGAAACAGTAGAAAAGGTATAGTGAAGGTTGAGTAAATTTCACATCAAGCTTTAAATCTTCATTCTGAAGCAACAGTTGTAGACAAGCTTTTGGTCAAATCACTGCTAGGATCATGGAAAAAAAGAAAAGAAAAGTGGAGTGAGTATAGTTAGGTAAGATAGATTTGAACAATCCCAACTAACTCAATAGATGACATAATATCATACTTTTGGTCGTGAAGAGTAGATTTTATGGTTGAGTTGCACCAAGTAGAGTGAATAGCCTTTAAGGACAGCAGC

Coding sequence (CDS)

ATGCTAAGCAAGGGTCAAGGAGCCACAATGGGTACCTATGACACTCTTCTTCTAGCATTTGATATGGACAAGAGGGTGGATGAAGCCGAATCTTTATGGAACATGATTTTGCATGCACATACTCGTTCCATCTCTAAGCGACTGTTTTCTAGGATGATCTCTTTATATGACCATCATGACTTGCAAGATAAGATTATTGAGATATTTGCAGACATGGAAGAGTTGGGAGTAAGGCCAGATGAAGACACAGTTAGAAGAGTAGCCCACGCCTTTCGAAAACTAGGTCAAGAAGAAAACGGGAAACTGGTCTATAAAAGATATGGCTGCAAATGGAAATACATACATTTCAAGGGTGAGAGGGTTAGAGTGAGAAGAGATGGATGGGATGAAGATGATAAATGA

Protein sequence

MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHDLQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGERVRVRRDGWDEDDK
Homology
[Close]
BLAST of Cp4.1LG01g05200 vs. Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-49
Identity = 95/125 (76.00%), Postives = 109/125 (87.20%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYD LLLAFDMD+R DEAESLWNMILH HTRSI +RLF+RMI+LY HHD
Sbjct: 157 MLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHD 216

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
           L DK+IE+FADMEEL V PDED+ RRVA AFR+L QEEN KL+ +RY  ++KYI+F GER
Sbjct: 217 LHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGER 276

Query: 121 VRVRR 126
           VRV+R
Sbjct: 277 VRVKR 281

[Close]
BLAST of Cp4.1LG01g05200 vs. Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-23
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQG TMGTY +LL A   D R+DEAE LWN +   H     ++ F++MIS+Y   D
Sbjct: 117 MLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRD 176

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRY-GCKWKYIHFKGE 120
           +  K+ E+FADMEELGV+P+   V  V   F KL  ++  + + K+Y   +W++ + KG 
Sbjct: 177 MHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGR 236

Query: 121 RVRVR 125
           RV+V+
Sbjct: 237 RVKVK 241

[Close]
BLAST of Cp4.1LG01g05200 vs. TrEMBL
Match: A0A0A0KSA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G189910 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.6e-63
Identity = 119/131 (90.84%), Postives = 126/131 (96.18%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH HTRSISKR+FSRMISLY+HHD
Sbjct: 138 MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRVFSRMISLYEHHD 197

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
           LQDKIIEIFADMEELGV+PDEDTVRRV  AF+KLGQE+N K+VYKRY C+WKYIHFKGER
Sbjct: 198 LQDKIIEIFADMEELGVKPDEDTVRRVCCAFQKLGQEDNRKMVYKRYSCQWKYIHFKGER 257

Query: 121 VRVRRDGWDED 132
           VRVRRDGWDED
Sbjct: 258 VRVRRDGWDED 268

[Close]
BLAST of Cp4.1LG01g05200 vs. TrEMBL
Match: M5WV26_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011078mg PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-59
Identity = 114/132 (86.36%), Postives = 123/132 (93.18%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYDTLLLAFDMD+RVDEAESLWNMILH HTRSISKRLFSRMISLYDHHD
Sbjct: 89  MLSKGQGATMGTYDTLLLAFDMDQRVDEAESLWNMILHTHTRSISKRLFSRMISLYDHHD 148

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
            Q+KIIE+FADMEELGV+PDEDTVRRVA AF++LGQEEN  LV +RY CKWKYIHFKGER
Sbjct: 149 KQNKIIEVFADMEELGVKPDEDTVRRVARAFKELGQEENKTLVLRRYQCKWKYIHFKGER 208

Query: 121 VRVRRDGWDEDD 133
           V+VR + WDEDD
Sbjct: 209 VKVRTNAWDEDD 220

[Close]
BLAST of Cp4.1LG01g05200 vs. TrEMBL
Match: D7TJV2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g02210 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 6.0e-58
Identity = 111/130 (85.38%), Postives = 120/130 (92.31%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYDTLLLAFDMD RVDEAESLWNMILH HTRSISK+LFSRMISLYDHHD
Sbjct: 146 MLSKGQGATMGTYDTLLLAFDMDWRVDEAESLWNMILHTHTRSISKQLFSRMISLYDHHD 205

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
           ++DK+IE+FADMEELGV+PDEDTVRRVA AF+ LGQE+  KLV K+Y CKWKYIHF GER
Sbjct: 206 MRDKVIEVFADMEELGVKPDEDTVRRVACAFQTLGQEDKQKLVLKKYQCKWKYIHFNGER 265

Query: 121 VRVRRDGWDE 131
           VRVRRD WDE
Sbjct: 266 VRVRRDAWDE 275

[Close]
BLAST of Cp4.1LG01g05200 vs. TrEMBL
Match: V4UKH2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016169mg PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-55
Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYDTLLLAFD D R DEAESLWNMILH HTRSISKRLFSRMISLYDHHD
Sbjct: 150 MLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTHTRSISKRLFSRMISLYDHHD 209

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
           + +KIIE+FADMEELGVRPDEDTVRR+A AF+++GQ+E  KLV K+Y  KWKYIHFKGER
Sbjct: 210 MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDEKQKLVLKKYLSKWKYIHFKGER 269

Query: 121 VRVRRDGWDE 131
           VRVRRD W E
Sbjct: 270 VRVRRDAWYE 279

[Close]
BLAST of Cp4.1LG01g05200 vs. TrEMBL
Match: A0A0B2PC93_GLYSO (Pentatricopeptide repeat-containing protein, chloroplastic OS=Glycine soja GN=glysoja_032778 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.8e-55
Identity = 105/131 (80.15%), Postives = 119/131 (90.84%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMI+HAH RS+SKRLFSRMISLYDHH+
Sbjct: 154 MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMIIHAHMRSVSKRLFSRMISLYDHHN 213

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
           + DKII++FADMEEL ++PDEDTVRRVA AFR+LG EE  KLV K+YG KWKYIHF GER
Sbjct: 214 MPDKIIDVFADMEELRLKPDEDTVRRVARAFRELGDEEKRKLVIKQYGLKWKYIHFNGER 273

Query: 121 VRVRRDGWDED 132
           VRVR + W+++
Sbjct: 274 VRVRTEAWEDN 284

[Close]
BLAST of Cp4.1LG01g05200 vs. TAIR10
Match: AT4G18975.1 (AT4G18975.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-50
Identity = 95/125 (76.00%), Postives = 109/125 (87.20%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYD LLLAFDMD+R DEAESLWNMILH HTRSI +RLF+RMI+LY HHD
Sbjct: 157 MLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHD 216

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
           L DK+IE+FADMEEL V PDED+ RRVA AFR+L QEEN KL+ +RY  ++KYI+F GER
Sbjct: 217 LHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGER 276

Query: 121 VRVRR 126
           VRV+R
Sbjct: 277 VRVKR 281

[Close]
BLAST of Cp4.1LG01g05200 vs. TAIR10
Match: AT4G21190.1 (AT4G21190.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-24
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQG TMGTY +LL A   D R+DEAE LWN +   H     ++ F++MIS+Y   D
Sbjct: 117 MLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRD 176

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRY-GCKWKYIHFKGE 120
           +  K+ E+FADMEELGV+P+   V  V   F KL  ++  + + K+Y   +W++ + KG 
Sbjct: 177 MHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGR 236

Query: 121 RVRVR 125
           RV+V+
Sbjct: 237 RVKVK 241

[Close]
BLAST of Cp4.1LG01g05200 vs. TAIR10
Match: AT1G04590.2 (AT1G04590.2 BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4))

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           +LSKGQG TMGTY  L+ A DMD+R +EA  +W   +     S+  +L  +M+ +Y  ++
Sbjct: 205 ILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNN 264

Query: 61  -LQD--KIIEIFADMEELGVR-PDEDTVRRVAHAFRKLGQEENGKLVYKRY 108
            LQ+  K++++F D+E    + PD+  V+ VA A+  LG  +  + V  +Y
Sbjct: 265 MLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKY 315

[Close]
BLAST of Cp4.1LG01g05200 vs. NCBI nr
Match: gi|659129885|ref|XP_008464896.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 6.2e-64
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH HTRSISKR+FSRMISLY+HHD
Sbjct: 138 MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRVFSRMISLYEHHD 197

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
           LQDKIIEIFADMEELGV+PDEDTVRR+  AF+KLGQEEN K+VYKRY C+WKYIHFKGER
Sbjct: 198 LQDKIIEIFADMEELGVKPDEDTVRRIGRAFQKLGQEENRKMVYKRYSCQWKYIHFKGER 257

Query: 121 VRVRRDGWDEDDK 134
           VRVR+DGWDEDD+
Sbjct: 258 VRVRKDGWDEDDQ 270

[Close]
BLAST of Cp4.1LG01g05200 vs. NCBI nr
Match: gi|659129887|ref|XP_008464897.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 6.2e-64
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH HTRSISKR+FSRMISLY+HHD
Sbjct: 98  MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRVFSRMISLYEHHD 157

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
           LQDKIIEIFADMEELGV+PDEDTVRR+  AF+KLGQEEN K+VYKRY C+WKYIHFKGER
Sbjct: 158 LQDKIIEIFADMEELGVKPDEDTVRRIGRAFQKLGQEENRKMVYKRYSCQWKYIHFKGER 217

Query: 121 VRVRRDGWDEDDK 134
           VRVR+DGWDEDD+
Sbjct: 218 VRVRKDGWDEDDQ 230

[Close]
BLAST of Cp4.1LG01g05200 vs. NCBI nr
Match: gi|778701148|ref|XP_011654973.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 5.2e-63
Identity = 119/131 (90.84%), Postives = 126/131 (96.18%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH HTRSISKR+FSRMISLY+HHD
Sbjct: 138 MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRVFSRMISLYEHHD 197

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
           LQDKIIEIFADMEELGV+PDEDTVRRV  AF+KLGQE+N K+VYKRY C+WKYIHFKGER
Sbjct: 198 LQDKIIEIFADMEELGVKPDEDTVRRVCCAFQKLGQEDNRKMVYKRYSCQWKYIHFKGER 257

Query: 121 VRVRRDGWDED 132
           VRVRRDGWDED
Sbjct: 258 VRVRRDGWDED 268

[Close]
BLAST of Cp4.1LG01g05200 vs. NCBI nr
Match: gi|645237846|ref|XP_008225398.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Prunus mume])

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-59
Identity = 114/132 (86.36%), Postives = 123/132 (93.18%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYDTLLLAFDMD+RVDEAESLWNMILH HTRSISKRLFSRMISLYDHHD
Sbjct: 163 MLSKGQGATMGTYDTLLLAFDMDQRVDEAESLWNMILHTHTRSISKRLFSRMISLYDHHD 222

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
            Q+KIIE+FADMEELGV+PDEDTVRRVA AF++LGQEEN  LV +RY CKWKYIHFKGER
Sbjct: 223 KQNKIIEVFADMEELGVKPDEDTVRRVARAFKELGQEENKTLVLRRYQCKWKYIHFKGER 282

Query: 121 VRVRRDGWDEDD 133
           V+VR + WDEDD
Sbjct: 283 VKVRTNAWDEDD 294

[Close]
BLAST of Cp4.1LG01g05200 vs. NCBI nr
Match: gi|595868309|ref|XP_007211999.1| (hypothetical protein PRUPE_ppa011078mg [Prunus persica])

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-59
Identity = 114/132 (86.36%), Postives = 123/132 (93.18%), Query Frame = 1 

Query: 1   MLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTRSISKRLFSRMISLYDHHD 60
           MLSKGQGATMGTYDTLLLAFDMD+RVDEAESLWNMILH HTRSISKRLFSRMISLYDHHD
Sbjct: 89  MLSKGQGATMGTYDTLLLAFDMDQRVDEAESLWNMILHTHTRSISKRLFSRMISLYDHHD 148

Query: 61  LQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKLVYKRYGCKWKYIHFKGER 120
            Q+KIIE+FADMEELGV+PDEDTVRRVA AF++LGQEEN  LV +RY CKWKYIHFKGER
Sbjct: 149 KQNKIIEVFADMEELGVKPDEDTVRRVARAFKELGQEENKTLVLRRYQCKWKYIHFKGER 208

Query: 121 VRVRRDGWDEDD 133
           V+VR + WDEDD
Sbjct: 209 VKVRTNAWDEDD 220

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g05200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP322_ARATH1.9e-4976.00Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop... [more]
PP332_ARATH1.8e-2344.80Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG01g05200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSA5_CUCSA3.6e-6390.84Uncharacterized protein OS=Cucumis sativus GN=Csa_5G189910 PE=4 SV=1[more]
M5WV26_PRUPE1.1e-5986.36Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011078mg PE=4 SV=1[more]
D7TJV2_VITVI6.0e-5885.38Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g02210 PE=4 SV=... [more]
V4UKH2_9ROSI2.1e-5583.08Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016169mg PE=4 SV=1[more]
A0A0B2PC93_GLYSO4.8e-5580.15Pentatricopeptide repeat-containing protein, chloroplastic OS=Glycine soja GN=gl... [more]
BLAST of Cp4.1LG01g05200 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18975.11.1e-5076.00 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G21190.11.0e-2444.80 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G04590.21.7e-1136.04 BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat... [more]
BLAST of Cp4.1LG01g05200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129885|ref|XP_008464896.1|6.2e-6489.47PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ... [more]
gi|659129887|ref|XP_008464897.1|6.2e-6489.47PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ... [more]
gi|778701148|ref|XP_011654973.1|5.2e-6390.84PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ... [more]
gi|645237846|ref|XP_008225398.1|1.6e-5986.36PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ... [more]
gi|595868309|ref|XP_007211999.1|1.6e-5986.36hypothetical protein PRUPE_ppa011078mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g05200.1Cp4.1LG01g05200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..99
score: 1.4
NoneNo IPR availablePANTHERPTHR24015:SF314SUBFAMILY NOT NAMEDcoord: 1..99
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g05200Cucsa.164890Cucumber (Gy14) v1cgycpeB0457
Cp4.1LG01g05200CmaCh04G001800Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g05200CmoCh04G001810Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g05200MELO3C026567Melon (DHL92) v3.5.1cpemeB378
Cp4.1LG01g05200ClCG07G003760Watermelon (Charleston Gray)cpewcgB410
Cp4.1LG01g05200Lsi04G009280Bottle gourd (USVL1VR-Ls)cpelsiB359
Cp4.1LG01g05200MELO3C026567.2Melon (DHL92) v3.6.1cpemedB440
Cp4.1LG01g05200Bhi07G000595Wax gourdcpewgoB0576
Cp4.1LG01g05200Carg18347Silver-seed gourdcarcpeB0130
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g05200Wax gourdcpewgoB0532
Cp4.1LG01g05200Wax gourdcpewgoB0543
Cp4.1LG01g05200Wax gourdcpewgoB0554
Cp4.1LG01g05200Watermelon (Charleston Gray)cpewcgB363
Cp4.1LG01g05200Cucurbita pepo (Zucchini)cpecpeB072
Cp4.1LG01g05200Cucurbita pepo (Zucchini)cpecpeB204
Cp4.1LG01g05200Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g05200Cucurbita pepo (Zucchini)cpecpeB377
Cp4.1LG01g05200Cucurbita pepo (Zucchini)cpecpeB401
Cp4.1LG01g05200Cucurbita pepo (Zucchini)cpecpeB394
Cp4.1LG01g05200Cucumber (Gy14) v1cgycpeB0366
Cp4.1LG01g05200Cucurbita maxima (Rimu)cmacpeB322
Cp4.1LG01g05200Cucurbita maxima (Rimu)cmacpeB723
Cp4.1LG01g05200Cucurbita maxima (Rimu)cmacpeB730
Cp4.1LG01g05200Cucurbita maxima (Rimu)cmacpeB828
Cp4.1LG01g05200Cucurbita moschata (Rifu)cmocpeB284
Cp4.1LG01g05200Cucurbita moschata (Rifu)cmocpeB582
Cp4.1LG01g05200Cucurbita moschata (Rifu)cmocpeB675
Cp4.1LG01g05200Cucurbita moschata (Rifu)cmocpeB683
Cp4.1LG01g05200Wild cucumber (PI 183967)cpecpiB438
Cp4.1LG01g05200Wild cucumber (PI 183967)cpecpiB469
Cp4.1LG01g05200Cucumber (Chinese Long) v2cpecuB438
Cp4.1LG01g05200Cucumber (Chinese Long) v2cpecuB467
Cp4.1LG01g05200Bottle gourd (USVL1VR-Ls)cpelsiB318
Cp4.1LG01g05200Bottle gourd (USVL1VR-Ls)cpelsiB343
Cp4.1LG01g05200Bottle gourd (USVL1VR-Ls)cpelsiB349
Cp4.1LG01g05200Watermelon (97103) v1cpewmB403
Cp4.1LG01g05200Watermelon (97103) v1cpewmB467
Cp4.1LG01g05200Melon (DHL92) v3.5.1cpemeB405
Cp4.1LG01g05200Cucumber (Gy14) v2cgybcpeB510
Cp4.1LG01g05200Cucumber (Gy14) v2cgybcpeB647
Cp4.1LG01g05200Cucumber (Gy14) v2cgybcpeB795
Cp4.1LG01g05200Cucumber (Gy14) v2cgybcpeB806
Cp4.1LG01g05200Melon (DHL92) v3.6.1cpemedB451
Cp4.1LG01g05200Melon (DHL92) v3.6.1cpemedB471
Cp4.1LG01g05200Melon (DHL92) v3.6.1cpemedB506
Cp4.1LG01g05200Silver-seed gourdcarcpeB0376
Cp4.1LG01g05200Silver-seed gourdcarcpeB0467
Cp4.1LG01g05200Silver-seed gourdcarcpeB0939
Cp4.1LG01g05200Silver-seed gourdcarcpeB1387
Cp4.1LG01g05200Cucumber (Chinese Long) v3cpecucB0542
Cp4.1LG01g05200Cucumber (Chinese Long) v3cpecucB0566
Cp4.1LG01g05200Cucumber (Chinese Long) v3cpecucB0577