Bhi07G000595 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi07G000595
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Pentatricopeptide repeat
Location	chr7 : 25728033 .. 25731365 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAATTCAAATGCAACTTTGAAATCGGTATAATTTAGGTAAGGCGTTCGCTCCCTCACAGATAGAAACTTGTGCAGGTCTTTCACTGAACTCAAGCTCACATGGGGTTTGATTCGTATGTGTAACTTGTGTTGCGCCCTTCTACCCAGAGCCCTTCTTTATCCTAAATTAATTAACCCCTTTGATTCGTATCTGTAATTTCTTGATTATACTTGATACCCATTACACAGAGCGCTGAAATTTGAAATTTCTGATGTTGGTTTACCATGGAAGCTCAACTGGGTTCGATGCCCTCGTGCCGAAGGTAAGCAAGAAAATTCAAACTTCCTCAATTTCGTTTTAACAATTTCTAACTGTTTAATCAGACAATTTTCCCCTTTCCCTTATAGATAGATTGCATTTACTTTAACAACAAATTGACATTTAGAGCTGCCAGTGTCAAGTGTGTCCACAAGCAAGCTGAGAGGTACTCTTCTTTTCCTATACTTTTTTTGCTTTCTGAGTTTCATTCAACTGCATGATTTTGATTTTAAGGTTGCTTTGATTAAATATAGACGTATTGTTAAGAAGGTTGGGAAGGAGGAACACCATTTATGGAAGAAAAGAGATTCTGCTGGCTCTGGGCAAAAGGCTCTTAATCTTGTTAGAATTGTAAGCTGCATTTTCGTTGATTCCCCCTCCAATATTGAGAGGAAAGAGTGGTAATTTCAGTTAGTTTGAAATTCAAATGCTGTTCTAACATATTGTAGGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGAGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGAAGTCAATGGAAGTGTGTCATTCAAGTACGAATGAGTTCGGTTTTACTTCTTGTCTTTCTGGCCTTTTGGCGAATTTGTACCTCGTCCATGATGTTGATTCTAAAGTATGCAGTGGTGTCTGTAATGAAATCATCTTTGTCCAGCTCTTACTATATTATCGCTTATTTTTTGGTCAGCTAATCTACTCGTGTGTTAGATTTTTATTGTAATGTTGCATTTATTTGATAAGTTGTGGTTTGTTCAGTTTTTATATTGAAGTTTGATCTTGAACCTAGGTCATTTGGACTTTCTTATGGTTAAATATACGATTGAAGAAACAAGAGATAACACTTTGGTTTTAGTTGATACATCAAGTTTCATAATTCCTGTTTAAGATTTAGCTTTATGGGCAGATAACTGATGGTTGTTGGTTCCTGAATTGTGAATGATGAAACAACAGCGAGTCTGTGTTTTTGAGAAAAATATTTCTCGAACTAGAACGCCAAATTGCTTAAAGCGATGGAAGCCTCGGTGTTGGACTTGCAGGGTACTTACGTTTTGCATGTGGAAAGATTATATCTGATTAACAATGAAAGTTAGAAAGAGAAAAGTTGGTCTTTTCCCTAATGTCAATTTCCCAAAGTCCTTTTATCTGGTAAAGTTTGGGCTTATGAATATTTATGATGGTTTCTGTATGCAATATTCAATAGTTGCCTTTTTCCTTCCACAAGAAAACTGATAACTCAAGACCTTTTCACCTATTGATATCACTTTCATATATTAGAGTATCTTGGCTGGATCGGAGTCAAATTAATAGCTCCTTATAGATTTTCCCGCCTAGTCTTTTTGTTAATCAATGGTTCTTATTACTCAGGTGGCAAAGTGGATGTTAAGCAAGGGTCAAGGAGCCACAATGGGAACATATGACACCCTTTTACTGGCATTTGATATGGACAAGAGGGTGGACGAAGCCGAATCATTATGGAACATGATTTTGCATACACATACACGTTCCATCTCTAAGCGATTGTTTTCTAGGATGATCTCTTTGTACGAACATCATGACTTGCAAGATAAGATTATCGAGGTATTGGGAATGGGATTTCCACATATTGCTTCTTACCTCCGGTTCCTCTCTATTTTTCAATCTTCTCTTTGTACCTTATCAATGATCTCATGCTTCAATTTCTTCTCTTATTACAGATATTTGCAGACATGGAAGAGTTGGGTGTAAAACCAGATGAAGATACCGTTAGAAGAGTCGGCCGTGCCTTTCATAAACTAGGTCAAGAAGAAAACCAGAAAATGGTCTATAAAAGATACGGCTGCCAATGGAAATACATACACTTCAAGGGTGAGAGGGTTAGAGTGAGAAGAGATGGATGGGATGAAGATGATGGATGATTGAAGAGCAGAGATGGCTGAACACTAGCATGAACAAGTTCATAGAATCATAAGGTATCTATCTACTGATTGCCGTTAATTATATGCGCTAAGGCATGCTGAAACCTAGATCTGCAGTCTATTTTTTTTCCACTGGTTTGTTTGAATATTTTAGTACTAACAGAGATAATGCAGACATTGTAAGATATTAATAAGATATGAAAAAAAGTAGTGTATATGTTAACCAAATGACTTTATCTATCATGTTTGCAAGAACCTTGATTCTATCTTAGGCTTGAGGTATGAAAAGAATAGCAGTAGGATTATTTTCATTGGGACAAACAACCCCGTTAGTCGAACCGGATAAGATTTTCATATCTTTTGCTTTTGCCTACTTATGAAAACAGTAGAAAAAGTATACTGAAGGTTGAGTAAATTTCACATCAAGGTTTGGAATCTTCATTCTGAAGCAATCAAGACTAGAAAAGCTTTTGATGAAATCACTGCTAGAATTATGCCAAAAGAAAAGTGGAGTATAGTTAGATAAGATGGATTTGATTTGAACAATCCCAACAATGACATGAACATGAAAATGCAAATTCACAAACAAGGGTAGCAGCAAAAGATAGATTATAATATAATGATAACATGTTGATAATTTATTGATTATATAATGTAGATTTGGATGTTGGTTGAATAATTTGAAAGTAGTATTATAATGAATGTATAGTTTATATATTGATTGCGATCTATTCCATGAAAGTTGAAAGAAAATCCAAGATCCAGATTGAAGTGGATGCCATTCCTGTCAAGTACAGAGGACAGCCCCATTGCTCCAACAAAAAACTATTCATAAAATTGTACGGTCGGCATCCACGCATGGCATGGGCATGACCATGCTCCCTATGTTCTCTTCTTTTCAAAAGATTGTCTATTTTTCTTTAAGCTTATTTGTTTGTGTCTCTCTCTCTATATATATATGTATATATTAATAGGTTCAAATACCATTTTTGCCCATATACTTTATGTTGGTCTAATTTTAGTCTTCAATAGTCTGAAAAATTTAGTCCTTATTGTTCTTATTGTCATTTTTCTCCAAAA

mRNA sequence

CCCAAATTCAAATGCAACTTTGAAATCGGTATAATTTAGGTAAGGCGTTCGCTCCCTCACAGATAGAAACTTGTGCAGGTCTTTCACTGAACTCAAGCTCACATGGGGTTTGATTCGTATGTGTAACTTGTGTTGCGCCCTTCTACCCAGAGCCCTTCTTTATCCTAAATTAATTAACCCCTTTGATTCGTATCTGTAATTTCTTGATTATACTTGATACCCATTACACAGAGCGCTGAAATTTGAAATTTCTGATGTTGGTTTACCATGGAAGCTCAACTGGGTTCGATGCCCTCGTGCCGAAGATAGATTGCATTTACTTTAACAACAAATTGACATTTAGAGCTGCCAGTGTCAAGTGTGTCCACAAGCAAGCTGAGAGACGTATTGTTAAGAAGGTTGGGAAGGAGGAACACCATTTATGGAAGAAAAGAGATTCTGCTGGCTCTGGGCAAAAGGCTCTTAATCTTGTTAGAATTGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGAGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGAAGTCAATGGAAGTGTGTCATTCAAGTGGCAAAGTGGATGTTAAGCAAGGGTCAAGGAGCCACAATGGGAACATATGACACCCTTTTACTGGCATTTGATATGGACAAGAGGGTGGACGAAGCCGAATCATTATGGAACATGATTTTGCATACACATACACGTTCCATCTCTAAGCGATTGTTTTCTAGGATGATCTCTTTGTACGAACATCATGACTTGCAAGATAAGATTATCGAGATATTTGCAGACATGGAAGAGTTGGGTGTAAAACCAGATGAAGATACCGTTAGAAGAGTCGGCCGTGCCTTTCATAAACTAGGTCAAGAAGAAAACCAGAAAATGGTCTATAAAAGATACGGCTGCCAATGGAAATACATACACTTCAAGGGTGAGAGGGTTAGAGTGAGAAGAGATGGATGGGATGAAGATGATGGATGATTGAAGAGCAGAGATGGCTGAACACTAGCATGAACAAGTTCATAGAATCATAAGTTGAAAGAAAATCCAAGATCCAGATTGAAGTGGATGCCATTCCTGTCAAGTACAGAGGACAGCCCCATTGCTCCAACAAAAAACTATTCATAAAATTGTACGGTCGGCATCCACGCATGGCATGGGCATGACCATGCTCCCTATGTTCTCTTCTTTTCAAAAGATTGTCTATTTTTCTTTAAGCTTATTTGTTTGTGTCTCTCTCTCTATATATATATGTATATATTAATAGGTTCAAATACCATTTTTGCCCATATACTTTATGTTGGTCTAATTTTAGTCTTCAATAGTCTGAAAAATTTAGTCCTTATTGTTCTTATTGTCATTTTTCTCCAAAA

Coding sequence (CDS)

ATGTTGGTTTACCATGGAAGCTCAACTGGGTTCGATGCCCTCGTGCCGAAGATAGATTGCATTTACTTTAACAACAAATTGACATTTAGAGCTGCCAGTGTCAAGTGTGTCCACAAGCAAGCTGAGAGACGTATTGTTAAGAAGGTTGGGAAGGAGGAACACCATTTATGGAAGAAAAGAGATTCTGCTGGCTCTGGGCAAAAGGCTCTTAATCTTGTTAGAATTGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGAGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGAAGTCAATGGAAGTGTGTCATTCAAGTGGCAAAGTGGATGTTAAGCAAGGGTCAAGGAGCCACAATGGGAACATATGACACCCTTTTACTGGCATTTGATATGGACAAGAGGGTGGACGAAGCCGAATCATTATGGAACATGATTTTGCATACACATACACGTTCCATCTCTAAGCGATTGTTTTCTAGGATGATCTCTTTGTACGAACATCATGACTTGCAAGATAAGATTATCGAGATATTTGCAGACATGGAAGAGTTGGGTGTAAAACCAGATGAAGATACCGTTAGAAGAGTCGGCCGTGCCTTTCATAAACTAGGTCAAGAAGAAAACCAGAAAATGGTCTATAAAAGATACGGCTGCCAATGGAAATACATACACTTCAAGGGTGAGAGGGTTAGAGTGAGAAGAGATGGATGGGATGAAGATGATGGATGA

Protein sequence

MLVYHGSSTGFDALVPKIDCIYFNNKLTFRAASVKCVHKQAERRIVKKVGKEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKMVYKRYGCQWKYIHFKGERVRVRRDGWDEDDG

Homology

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BLAST of Bhi07G000595 vs. Swiss-Prot
Match: sp|Q2V3H0|PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 337.4 bits (864), Expect = 1.4e-91
Identity = 161/207 (77.78%), Postives = 185/207 (89.37%), Query Frame = 0


Query: 46  VKKVGKEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAA 105
           +KKVGK+EHHLWKK DSAGSGQKALNLVR++S  PNEKEAVYG LNKW+AWE EFP+IAA
Sbjct: 75  IKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAA 134

Query: 106 AKALRILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH 165
           AKAL+ILRKRSQW  VIQ+AKWMLSKGQGATMGTYD LLLAFDMD+R DEAESLWNMILH
Sbjct: 135 AKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILH 194

Query: 166 THTRSISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEE 225
           THTRSI +RLF+RMI+LY HHDL DK+IE+FADMEEL V PDED+ RRV RAF +L QEE
Sbjct: 195 THTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEE 254

Query: 226 NQKMVYKRYGCQWKYIHFKGERVRVRR 253
           N+K++ +RY  ++KYI+F GERVRV+R
Sbjct: 255 NRKLILRRYLSEYKYIYFNGERVRVKR 281

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BLAST of Bhi07G000595 vs. Swiss-Prot
Match: sp|Q8LG95|PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.8e-46
Identity = 92/197 (46.70%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 56  LWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKR 115
           +WK R   G+  KA  ++  +    N KE VYG L+ +IAWE EFPL+   KAL IL   
Sbjct: 45  VWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDE 104

Query: 116 SQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRL 175
            +WK +IQV KWMLSKGQG TMGTY +LL A   D R+DEAE LWN +   H     ++ 
Sbjct: 105 KEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKF 164

Query: 176 FSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKMVYKRY- 235
           F++MIS+Y   D+  K+ E+FADMEELGVKP+   V  VG+ F KL  ++  + + K+Y 
Sbjct: 165 FNKMISIYYKRDMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYP 224

Query: 236 GCQWKYIHFKGERVRVR 252
             QW++ + KG RV+V+
Sbjct: 225 PPQWEFRYIKGRRVKVK 241

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BLAST of Bhi07G000595 vs. TAIR10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 337.4 bits (864), Expect = 7.7e-93
Identity = 161/207 (77.78%), Postives = 185/207 (89.37%), Query Frame = 0


Query: 46  VKKVGKEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAA 105
           +KKVGK+EHHLWKK DSAGSGQKALNLVR++S  PNEKEAVYG LNKW+AWE EFP+IAA
Sbjct: 75  IKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAA 134

Query: 106 AKALRILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH 165
           AKAL+ILRKRSQW  VIQ+AKWMLSKGQGATMGTYD LLLAFDMD+R DEAESLWNMILH
Sbjct: 135 AKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILH 194

Query: 166 THTRSISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEE 225
           THTRSI +RLF+RMI+LY HHDL DK+IE+FADMEEL V PDED+ RRV RAF +L QEE
Sbjct: 195 THTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEE 254

Query: 226 NQKMVYKRYGCQWKYIHFKGERVRVRR 253
           N+K++ +RY  ++KYI+F GERVRV+R
Sbjct: 255 NRKLILRRYLSEYKYIYFNGERVRVKR 281

[Close]

BLAST of Bhi07G000595 vs. TAIR10
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 185.3 bits (469), Expect = 4.9e-47
Identity = 92/197 (46.70%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 56  LWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKR 115
           +WK R   G+  KA  ++  +    N KE VYG L+ +IAWE EFPL+   KAL IL   
Sbjct: 45  VWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDE 104

Query: 116 SQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRL 175
            +WK +IQV KWMLSKGQG TMGTY +LL A   D R+DEAE LWN +   H     ++ 
Sbjct: 105 KEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKF 164

Query: 176 FSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKMVYKRY- 235
           F++MIS+Y   D+  K+ E+FADMEELGVKP+   V  VG+ F KL  ++  + + K+Y 
Sbjct: 165 FNKMISIYYKRDMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYP 224

Query: 236 GCQWKYIHFKGERVRVR 252
             QW++ + KG RV+V+
Sbjct: 225 PPQWEFRYIKGRRVKVK 241

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BLAST of Bhi07G000595 vs. TAIR10
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4))

HSP 1 Score: 115.5 bits (288), Expect = 4.8e-26
Identity = 71/208 (34.13%), Postives = 113/208 (54.33%), Query Frame = 0


Query: 43  RRIVKKVGKEEHHLWKKRDSAGSGQ------------KALNLVRIVSQCPNEKEAVYGEL 102
           +RIVK   +E+     K+ +A + +            K   LV  +    + KEAVYG L
Sbjct: 108 KRIVKNEDEEDFSDSSKKGNAENPRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGAL 167

Query: 103 NKWIAWETEFPLIAAAKALRILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMD 162
           + W+AWE  FP+ +    +  L K  QW  ++QV KW+LSKGQG TMGTY  L+ A DMD
Sbjct: 168 DAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMD 227

Query: 163 KRVDEAESLWNMILHTHTRSISKRLFSRMISLY-EHHDLQD--KIIEIFADMEELGVK-P 222
           +R +EA  +W   +     S+  +L  +M+ +Y  ++ LQ+  K++++F D+E    K P
Sbjct: 228 RRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPP 287

Query: 223 DEDTVRRVGRAFHKLGQEENQKMVYKRY 235
           D+  V+ V  A+  LG  + ++ V  +Y
Sbjct: 288 DKHIVQTVADAYELLGMLDEKERVVTKY 315

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BLAST of Bhi07G000595 vs. TrEMBL
Match: tr|A0A1S3CP50|A0A1S3CP50_CUCME (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502655 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 4.4e-135
Identity = 242/269 (89.96%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 1   MLVYHGSSTGFDALVPKIDCIYFNNKLTFRAASVKCVHKQA----------ERRIVKKVG 60
           MLV HGSSTGFDALVPKIDCIY++NK  FR ASV CVH QA          ERR+VKKVG
Sbjct: 1   MLVLHGSSTGFDALVPKIDCIYYHNKCAFRPASVICVHNQAAQPHTSFTTPERRVVKKVG 60

Query: 61  KEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120
           KE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR
Sbjct: 61  KEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120

Query: 121 ILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180
           ILRKRSQWK VIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS
Sbjct: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180

Query: 181 ISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKMV 240
           ISKR+FSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRR+GRAF KLGQEEN+KMV
Sbjct: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRIGRAFQKLGQEENRKMV 240

Query: 241 YKRYGCQWKYIHFKGERVRVRRDGWDEDD 260
           YKRY CQWKYIHFKGERVRVR+DGWDEDD
Sbjct: 241 YKRYSCQWKYIHFKGERVRVRKDGWDEDD 269

[Close]

BLAST of Bhi07G000595 vs. TrEMBL
Match: tr|A0A0A0KSA5|A0A0A0KSA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G189910 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 6.0e-132
Identity = 237/268 (88.43%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 1   MLVYHGSSTGFDALVPKIDCIYFNNKLTFRAASVKCVHKQA----------ERRIVKKVG 60
           MLV+HG+STGFDAL+PKIDCIY++NK TF  +SV CVH QA          ERR+VKKVG
Sbjct: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG 60

Query: 61  KEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120
           KE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR
Sbjct: 61  KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120

Query: 121 ILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180
           ILRKRSQWK VIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS
Sbjct: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180

Query: 181 ISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKMV 240
           ISKR+FSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRV  AF KLGQE+N+KMV
Sbjct: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCCAFQKLGQEDNRKMV 240

Query: 241 YKRYGCQWKYIHFKGERVRVRRDGWDED 259
           YKRY CQWKYIHFKGERVRVRRDGWDED
Sbjct: 241 YKRYSCQWKYIHFKGERVRVRRDGWDED 268

[Close]

BLAST of Bhi07G000595 vs. TrEMBL
Match: tr|A0A1S3CMN8|A0A1S3CMN8_CUCME (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502655 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 9.3e-117
Identity = 208/218 (95.41%), Postives = 214/218 (98.17%), Query Frame = 0


Query: 42  ERRIVKKVGKEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFP 101
           +RR+VKKVGKE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFP
Sbjct: 12  QRRVVKKVGKEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFP 71

Query: 102 LIAAAKALRILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWN 161
           LIAAAKALRILRKRSQWK VIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWN
Sbjct: 72  LIAAAKALRILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWN 131

Query: 162 MILHTHTRSISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKL 221
           MILHTHTRSISKR+FSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRR+GRAF KL
Sbjct: 132 MILHTHTRSISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRIGRAFQKL 191

Query: 222 GQEENQKMVYKRYGCQWKYIHFKGERVRVRRDGWDEDD 260
           GQEEN+KMVYKRY CQWKYIHFKGERVRVR+DGWDEDD
Sbjct: 192 GQEENRKMVYKRYSCQWKYIHFKGERVRVRKDGWDEDD 229

[Close]

BLAST of Bhi07G000595 vs. TrEMBL
Match: tr|A0A251PGZ3|A0A251PGZ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G071600 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 5.8e-103
Identity = 189/246 (76.83%), Postives = 213/246 (86.59%), Query Frame = 0


Query: 24  NNKLTFRAASVKCVHKQA----------ERRIVKKVGKEEHHLWKKRDSAGSGQKALNLV 83
           ++ ++  A +VKC  KQ+          E++ +KKVG++EHHLW+KRDSAGSGQKALNLV
Sbjct: 49  HHTVSINAFNVKCSFKQSRQPLTSPKAIEKKTIKKVGRKEHHLWQKRDSAGSGQKALNLV 108

Query: 84  RIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKCVIQVAKWMLSKGQ 143
           RIVS  PNEKE VYG L+KW AWETEFPLIAA KALRILRKRSQW  VIQVAKWMLSKGQ
Sbjct: 109 RIVSGLPNEKETVYGALDKWTAWETEFPLIAAVKALRILRKRSQWVRVIQVAKWMLSKGQ 168

Query: 144 GATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSISKRLFSRMISLYEHHDLQDKII 203
           GATMGTYDTLLLAFDMD+RVDEAESLWNMILHTHTRSISKRLFSRMISLY+HHD Q+KII
Sbjct: 169 GATMGTYDTLLLAFDMDQRVDEAESLWNMILHTHTRSISKRLFSRMISLYDHHDKQNKII 228

Query: 204 EIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKMVYKRYGCQWKYIHFKGERVRVRRD 260
           E+FADMEELGVKPDEDTVRRV RAF +LGQEEN+ +V +RY C+WKYIHFKGERV+VR +
Sbjct: 229 EVFADMEELGVKPDEDTVRRVARAFKELGQEENKTLVLRRYQCKWKYIHFKGERVKVRTN 288

[Close]

BLAST of Bhi07G000595 vs. TrEMBL
Match: tr|D7TJV2|D7TJV2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g02210 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.3e-102
Identity = 187/229 (81.66%), Postives = 204/229 (89.08%), Query Frame = 0


Query: 34  VKCVH-----KQAERRIVKKVGKEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYG 93
           VKC H     +  E+ I KKVGK+EHHLW+KRDS GSGQKALNLVRIVS+ PNEKEAVYG
Sbjct: 47  VKCCHNPPSYRAVEKEISKKVGKKEHHLWRKRDSIGSGQKALNLVRIVSELPNEKEAVYG 106

Query: 94  ELNKWIAWETEFPLIAAAKALRILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFD 153
            L+KW AWETEFPLIAAAKALRILRKR+QWK VIQVAKWMLSKGQGATMGTYDTLLLAFD
Sbjct: 107 ALDKWTAWETEFPLIAAAKALRILRKRNQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFD 166

Query: 154 MDKRVDEAESLWNMILHTHTRSISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDE 213
           MD RVDEAESLWNMILHTHTRSISK+LFSRMISLY+HHD++DK+IE+FADMEELGVKPDE
Sbjct: 167 MDWRVDEAESLWNMILHTHTRSISKQLFSRMISLYDHHDMRDKVIEVFADMEELGVKPDE 226

Query: 214 DTVRRVGRAFHKLGQEENQKMVYKRYGCQWKYIHFKGERVRVRRDGWDE 258
           DTVRRV  AF  LGQE+ QK+V K+Y C+WKYIHF GERVRVRRD WDE
Sbjct: 227 DTVRRVACAFQTLGQEDKQKLVLKKYQCKWKYIHFNGERVRVRRDAWDE 275

[Close]

BLAST of Bhi07G000595 vs. NCBI nr
Match: XP_008464896.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 489.6 bits (1259), Expect = 6.7e-135
Identity = 242/269 (89.96%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 1   MLVYHGSSTGFDALVPKIDCIYFNNKLTFRAASVKCVHKQA----------ERRIVKKVG 60
           MLV HGSSTGFDALVPKIDCIY++NK  FR ASV CVH QA          ERR+VKKVG
Sbjct: 1   MLVLHGSSTGFDALVPKIDCIYYHNKCAFRPASVICVHNQAAQPHTSFTTPERRVVKKVG 60

Query: 61  KEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120
           KE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR
Sbjct: 61  KEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120

Query: 121 ILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180
           ILRKRSQWK VIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS
Sbjct: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180

Query: 181 ISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKMV 240
           ISKR+FSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRR+GRAF KLGQEEN+KMV
Sbjct: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRIGRAFQKLGQEENRKMV 240

Query: 241 YKRYGCQWKYIHFKGERVRVRRDGWDEDD 260
           YKRY CQWKYIHFKGERVRVR+DGWDEDD
Sbjct: 241 YKRYSCQWKYIHFKGERVRVRKDGWDEDD 269

[Close]

BLAST of Bhi07G000595 vs. NCBI nr
Match: XP_011654973.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis sativus] >KGN50596.1 hypothetical protein Csa_5G189910 [Cucumis sativus])

HSP 1 Score: 479.2 bits (1232), Expect = 9.0e-132
Identity = 237/268 (88.43%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 1   MLVYHGSSTGFDALVPKIDCIYFNNKLTFRAASVKCVHKQA----------ERRIVKKVG 60
           MLV+HG+STGFDAL+PKIDCIY++NK TF  +SV CVH QA          ERR+VKKVG
Sbjct: 1   MLVFHGTSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFTTPERRVVKKVG 60

Query: 61  KEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120
           KE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR
Sbjct: 61  KETHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALR 120

Query: 121 ILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180
           ILRKRSQWK VIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS
Sbjct: 121 ILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRS 180

Query: 181 ISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKMV 240
           ISKR+FSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRV  AF KLGQE+N+KMV
Sbjct: 181 ISKRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCCAFQKLGQEDNRKMV 240

Query: 241 YKRYGCQWKYIHFKGERVRVRRDGWDED 259
           YKRY CQWKYIHFKGERVRVRRDGWDED
Sbjct: 241 YKRYSCQWKYIHFKGERVRVRRDGWDED 268

[Close]

BLAST of Bhi07G000595 vs. NCBI nr
Match: XP_022942519.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita moschata] >XP_022942520.1 pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita moschata])

HSP 1 Score: 475.7 bits (1223), Expect = 1.0e-130
Identity = 241/270 (89.26%), Postives = 245/270 (90.74%), Query Frame = 0


Query: 1   MLVYHGSSTGFDALVPKIDCIYFNNKLTFRAASVKCVHKQ----------AERRIV-KKV 60
           ML Y GSSTGFDALVPK  CIY  NKL FRAASVKCVHKQ          AERRIV KKV
Sbjct: 1   MLAYRGSSTGFDALVPKKVCIYNYNKLAFRAASVKCVHKQAAQSLTGSTTAERRIVKKKV 60

Query: 61  GKEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKAL 120
           GKE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAA+KAL
Sbjct: 61  GKEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAASKAL 120

Query: 121 RILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTR 180
           RILRKRSQWK VIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH HTR
Sbjct: 121 RILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTR 180

Query: 181 SISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKM 240
           SISKRLFSRMISLY+HHDLQDKIIEIFADMEELGV+PDEDTVRRV  AF KLGQEEN KM
Sbjct: 181 SISKRLFSRMISLYDHHDLQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKM 240

Query: 241 VYKRYGCQWKYIHFKGERVRVRRDGWDEDD 260
           VYKRYGC+WKYIHFKGERVRVRRDGWDEDD
Sbjct: 241 VYKRYGCKWKYIHFKGERVRVRRDGWDEDD 270

[Close]

BLAST of Bhi07G000595 vs. NCBI nr
Match: XP_023541595.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023541609.1 pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 474.6 bits (1220), Expect = 2.2e-130
Identity = 240/270 (88.89%), Postives = 245/270 (90.74%), Query Frame = 0


Query: 1   MLVYHGSSTGFDALVPKIDCIYFNNKLTFRAASVKCVHKQ----------AERRIV-KKV 60
           ML Y GSSTGFDALVPK  CIY  NKL FRAASVKCVHKQ          AERRIV KKV
Sbjct: 1   MLAYRGSSTGFDALVPKKVCIYNYNKLAFRAASVKCVHKQAAQSLTSSTTAERRIVKKKV 60

Query: 61  GKEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKAL 120
           GKE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAA+KAL
Sbjct: 61  GKEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAASKAL 120

Query: 121 RILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTR 180
           RILRKRSQWK VIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH HTR
Sbjct: 121 RILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTR 180

Query: 181 SISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKM 240
           SISKRLFSRMISLY+HHDLQDKIIEIFADMEELGV+PDEDTVRRV  AF KLGQEEN K+
Sbjct: 181 SISKRLFSRMISLYDHHDLQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKL 240

Query: 241 VYKRYGCQWKYIHFKGERVRVRRDGWDEDD 260
           VYKRYGC+WKYIHFKGERVRVRRDGWDEDD
Sbjct: 241 VYKRYGCKWKYIHFKGERVRVRRDGWDEDD 270

[Close]

BLAST of Bhi07G000595 vs. NCBI nr
Match: XP_022996325.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita maxima] >XP_022996334.1 pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita maxima])

HSP 1 Score: 469.9 bits (1208), Expect = 5.5e-129
Identity = 238/270 (88.15%), Postives = 243/270 (90.00%), Query Frame = 0


Query: 1   MLVYHGSSTGFDALVPKIDCIYFNNKLTFRAASVKCVHKQ----------AERRIV-KKV 60
           ML Y GSSTGFDALVPK  CIY  NKL FRAASVKCVHKQ          AERRIV KKV
Sbjct: 1   MLAYRGSSTGFDALVPKKVCIYNYNKLAFRAASVKCVHKQAAQSLTSSTTAERRIVKKKV 60

Query: 61  GKEEHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKAL 120
           GKE HHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAA+KAL
Sbjct: 61  GKEAHHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAASKAL 120

Query: 121 RILRKRSQWKCVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTR 180
           RILRKRSQWK VIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILH HTR
Sbjct: 121 RILRKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHAHTR 180

Query: 181 SISKRLFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVGRAFHKLGQEENQKM 240
           SISKRLFSRMI+LY+HHDLQDKIIEIFADMEELGV+PDEDTVRRV  AF KLGQEEN K 
Sbjct: 181 SISKRLFSRMIALYDHHDLQDKIIEIFADMEELGVRPDEDTVRRVAHAFRKLGQEENGKT 240

Query: 241 VYKRYGCQWKYIHFKGERVRVRRDGWDEDD 260
           VYKRYGC+WKYIHFK ERVRVRRDGWDEDD
Sbjct: 241 VYKRYGCKWKYIHFKSERVRVRRDGWDEDD 270

The following BLAST results are available for this feature:

BLAST of Bhi07G000595 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2V3H0\|PP322_ARATH	1.4e-91	77.78	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]
sp\|Q8LG95\|PP332_ARATH	8.8e-46	46.70	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]

BLAST of Bhi07G000595 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18975.1	7.7e-93	77.78	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21190.1	4.9e-47	46.70	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G04590.2	4.8e-26	34.13	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]

BLAST of Bhi07G000595 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CP50\|A0A1S3CP50_CUCME	4.4e-135	89.96	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
tr\|A0A0A0KSA5\|A0A0A0KSA5_CUCSA	6.0e-132	88.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G189910 PE=4 SV=1	[more]
tr\|A0A1S3CMN8\|A0A1S3CMN8_CUCME	9.3e-117	95.41	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 ...	[more]
tr\|A0A251PGZ3\|A0A251PGZ3_PRUPE	5.8e-103	76.83	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G071600 PE=4 SV=1	[more]
tr\|D7TJV2\|D7TJV2_VITVI	1.3e-102	81.66	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g02210 PE=4 SV=...	[more]

BLAST of Bhi07G000595 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464896.1	6.7e-135	89.96	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
XP_011654973.1	9.0e-132	88.43	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
XP_022942519.1	1.0e-130	89.26	pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita ...	[more]
XP_023541595.1	2.2e-130	88.89	pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita ...	[more]
XP_022996325.1	5.5e-129	88.15	pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucurbita ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0009536	plastid
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M000595	Bhi07M000595	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 66..234 e-value: 2.2E-13 score: 51.9
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 32..257
None	No IPR available	PANTHER	PTHR24015:SF964	SUBFAMILY NOT NAMED	coord: 32..257
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 172..206 score: 8.506
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 136..170 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi07G000595	MELO3C026567	Melon (DHL92) v3.5.1	mewgoB080
Bhi07G000595	CmaCh04G001800	Cucurbita maxima (Rimu)	cmawgoB0912
Bhi07G000595	CmoCh04G001810	Cucurbita moschata (Rifu)	cmowgoB0912
Bhi07G000595	Lsi04G009280	Bottle gourd (USVL1VR-Ls)	lsiwgoB385
Bhi07G000595	Cp4.1LG01g05200	Cucurbita pepo (Zucchini)	cpewgoB0576
Bhi07G000595	MELO3C026567.2	Melon (DHL92) v3.6.1	medwgoB078

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi07G000595	Cucumber (Gy14) v1	cgywgoB341
Bhi07G000595	Cucumber (Gy14) v2	cgybwgoB477
Bhi07G000595	Cucumber (Gy14) v2	cgybwgoB485
Bhi07G000595	Wild cucumber (PI 183967)	cpiwgoB506
Bhi07G000595	Wild cucumber (PI 183967)	cpiwgoB515
Bhi07G000595	Cucumber (Chinese Long) v3	cucwgoB513
Bhi07G000595	Cucumber (Chinese Long) v3	cucwgoB522
Bhi07G000595	Cucumber (Chinese Long) v2	cuwgoB501
Bhi07G000595	Cucumber (Chinese Long) v2	cuwgoB511
Bhi07G000595	Watermelon (Charleston Gray)	wcgwgoB469
Bhi07G000595	Watermelon (97103) v2	wgowmbB532
Bhi07G000595	Watermelon (97103) v2	wgowmbB537
Bhi07G000595	Silver-seed gourd	carwgoB0979