Cp4.1LG01g04880 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g04880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Cp4.1LG01 : 996974 .. 997881 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTTCATACTACTCTTCCAATGGCACTTGCAGATCACCTTCAAAGAATCCACCCAGTTACCGACGTTGAACGTCCGCCACCGCCACCGCCACCGCCTCCTCCGCCATCAGCGCCGCCTCCCAAACTTCTCCCTTCCAAGAAGACGAGATCTTCGTGTGTTTGCAAATGTTTTTGTTGGACATTTTGTGTTATTTTTCTTCTACTCATCGTGATCGGAGGCGTCGTTGGAATTCTCTATCTCGTTTTCAAGCCGAAAATTCCGACGTATTCCATCAACTCCTTAACTATCAGCGATCTCCGACTCAACGTCGACATGTCGCTCTATGCAAGGTTTAGTTAAATCATTATCTAATCAATCATAAAGTTTGTTTAGAGTAAAATTAATGCTAAATCTCTTAGGTTTTAATTTTTTTTTTTTTAGTATTAATTAATGTTAACATTAATAGGTTCGACGTGAAGATCACAGCCTACAACCCGAATGAGAAGATCGGAATATACTACGAAAAGGGAGGAGTATTGAGCGTGTGGTATACGGACAAGAAGCTTTGTCAAGGGTCCTTGCCGGCGTTCTACCATGGCCACCGGAACAGGACGGCGCTGGACGTGGATTTGACGGGAAGGACGGTGAAAGGAAACACTTTGATGGCGGCGTTAGTGGAGCAGCAGCGGACCGGCCGCATCCCATTGCAGCTCCGTGCGGCGGCGCCGGTGGCCGTGAAATTGGGACAGCTGAAGCTTAAGAAAGTAAAAATTTTGGGGAATTGCTTGTTGGTTGTGGATAGTTTGAGCGCCAATAATGCCATTAGTATTAAAGCTAGTAATTGCAAGTTTAGGTTGAAAATTTAATTATTATTTTTTTTTTATTTTTTGAAAATTCTCTACCAATTTTCAAAACTTTTGTTAATT

mRNA sequence

TCTCTTCATACTACTCTTCCAATGGCACTTGCAGATCACCTTCAAAGAATCCACCCAGTTACCGACGTTGAACGTCCGCCACCGCCACCGCCACCGCCTCCTCCGCCATCAGCGCCGCCTCCCAAACTTCTCCCTTCCAAGAAGACGAGATCTTCGTGTGTTTGCAAATGTTTTTGTTGGACATTTTGTGTTATTTTTCTTCTACTCATCGTGATCGGAGGCGTCGTTGGAATTCTCTATCTCGTTTTCAAGCCGAAAATTCCGACGTATTCCATCAACTCCTTAACTATCAGCGATCTCCGACTCAACGTCGACATGTCGCTCTATGCAAGGTTCGACGTGAAGATCACAGCCTACAACCCGAATGAGAAGATCGGAATATACTACGAAAAGGGAGGAGTATTGAGCGTGTGGTATACGGACAAGAAGCTTTGTCAAGGGTCCTTGCCGGCGTTCTACCATGGCCACCGGAACAGGACGGCGCTGGACGTGGATTTGACGGGAAGGACGGTGAAAGGAAACACTTTGATGGCGGCGTTAGTGGAGCAGCAGCGGACCGGCCGCATCCCATTGCAGCTCCGTGCGGCGGCGCCGGTGGCCGTGAAATTGGGACAGCTGAAGCTTAAGAAAGTAAAAATTTTGGGGAATTGCTTGTTGGTTGTGGATAGTTTGAGCGCCAATAATGCCATTAGTATTAAAGCTAGTAATTGCAAGTTTAGGTTGAAAATTTAATTATTATTTTTTTTTTATTTTTTGAAAATTCTCTACCAATTTTCAAAACTTTTGTTAATT

Coding sequence (CDS)

ATGGCACTTGCAGATCACCTTCAAAGAATCCACCCAGTTACCGACGTTGAACGTCCGCCACCGCCACCGCCACCGCCTCCTCCGCCATCAGCGCCGCCTCCCAAACTTCTCCCTTCCAAGAAGACGAGATCTTCGTGTGTTTGCAAATGTTTTTGTTGGACATTTTGTGTTATTTTTCTTCTACTCATCGTGATCGGAGGCGTCGTTGGAATTCTCTATCTCGTTTTCAAGCCGAAAATTCCGACGTATTCCATCAACTCCTTAACTATCAGCGATCTCCGACTCAACGTCGACATGTCGCTCTATGCAAGGTTCGACGTGAAGATCACAGCCTACAACCCGAATGAGAAGATCGGAATATACTACGAAAAGGGAGGAGTATTGAGCGTGTGGTATACGGACAAGAAGCTTTGTCAAGGGTCCTTGCCGGCGTTCTACCATGGCCACCGGAACAGGACGGCGCTGGACGTGGATTTGACGGGAAGGACGGTGAAAGGAAACACTTTGATGGCGGCGTTAGTGGAGCAGCAGCGGACCGGCCGCATCCCATTGCAGCTCCGTGCGGCGGCGCCGGTGGCCGTGAAATTGGGACAGCTGAAGCTTAAGAAAGTAAAAATTTTGGGGAATTGCTTGTTGGTTGTGGATAGTTTGAGCGCCAATAATGCCATTAGTATTAAAGCTAGTAATTGCAAGTTTAGGTTGAAAATTTAA

Protein sequence

MALADHLQRIHPVTDVERPPPPPPPPPPPSAPPPKLLPSKKTRSSCVCKCFCWTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFDVKITAYNPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKGNTLMAALVEQQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIKASNCKFRLKI

Homology

[Close]

BLAST of Cp4.1LG01g04880 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09
Identity = 41/146 (28.08%), Postives = 69/146 (47.26%), Query Frame = 1


Query: 29  PSAPPPKLLPSKKTR--------SSCVCKCFCWTFCVIFLLLIVIGGVVGI----LYLVF 88
           PS PPPK +     R          C+  C C    VIF +LI I  ++GI    ++L+F
Sbjct: 11  PSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAALIIWLIF 70

Query: 89  KPKIPTYSINSLTISDLRLNVDMSLYARFDVKITAYNPNEKIGIYYEKGGVLSVWYTDKK 148
           +P    + +    +++  L+   +L    D+  T  NPN +IG+YY++  V   +   + 
Sbjct: 71  RPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRF 130

Query: 149 LCQGSLPAFYHGHRNRTALDVDLTGR 163
               ++  FY GH+N T +   L G+
Sbjct: 131 GMSNNISKFYQGHKNTTVVGTKLVGQ 156

[Close]

BLAST of Cp4.1LG01g04880 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-06
Identity = 40/179 (22.35%), Postives = 81/179 (45.25%), Query Frame = 1


Query: 57  VIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFDVKITAYNPNE 116
           VI   +I++   + +++++ +P  P + +   T+    L+    L + F + I + N N 
Sbjct: 24  VIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRNRNS 83

Query: 117 KIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKGNTLMA-ALVE 176
           +IGIYY++  V + +   +   + ++P  Y GH+        + G +V      A AL +
Sbjct: 84  RIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGD 143

Query: 177 QQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIKASNCKFRL 235
           +Q  G + L +RA   V  K+G L   K  +   C   ++       + +  +  K+ L
Sbjct: 144 EQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAGVHVGENAVKYML 202

[Close]

BLAST of Cp4.1LG01g04880 vs. TrEMBL
Match: A0A0A0KQ99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182130 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 4.0e-97
Identity = 188/240 (78.33%), Postives = 214/240 (89.17%), Query Frame = 1


Query: 1   MALADHLQRIHPVTDVERPPPPP----PPPPPPSAPPPKLLPSKKTRSSCVCKCFCWTFC 60
           MAL DH Q+IHP+TDVE PPPPP    PPPP   A   ++LP KK RS C+C+C C+TFC
Sbjct: 1   MALVDHHQKIHPLTDVEPPPPPPQSSAPPPPLEKALHHQILPPKKRRS-CLCRCLCYTFC 60

Query: 61  VIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFDVKITAYNPNE 120
           +I LLLI++G V+GILYLVFKPKIPT+SI+SL ISDLRLN DMSLYARFDVKIT YNPNE
Sbjct: 61  LILLLLIILGAVIGILYLVFKPKIPTFSIDSLNISDLRLNFDMSLYARFDVKITTYNPNE 120

Query: 121 KIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKGNTLMAALVEQ 180
           KIGIYYEKGGVLSVWYT+ KLC+GSLPAFYHGHRN+TALDV LTGRTV G+TLM+ALVEQ
Sbjct: 121 KIGIYYEKGGVLSVWYTENKLCEGSLPAFYHGHRNKTALDVVLTGRTVYGSTLMSALVEQ 180

Query: 181 QRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIKASNCKFRLKI 237
           Q+TGRIPLQL+A APVAVK+G++KLKKVKILGNCLLVVDSL+ANNAI+IKASNCKFRLK+
Sbjct: 181 QQTGRIPLQLQAVAPVAVKMGKMKLKKVKILGNCLLVVDSLTANNAITIKASNCKFRLKL 239

[Close]

BLAST of Cp4.1LG01g04880 vs. TrEMBL
Match: A0A0D2V0U6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G027300 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.0e-76
Identity = 159/250 (63.60%), Postives = 187/250 (74.80%), Query Frame = 1


Query: 3   LADHLQRIHPVTDVERPPPPPPPPPPPSAP----------------PPKLLPSKKTRSSC 62
           + DH QRIHPV DVE P P  P  P  SA                 P +  P    + SC
Sbjct: 1   MTDHQQRIHPVVDVEAPAPSTPLVPHGSATSEKGSPIQQRPLQRTIPVRPPPPPPRKRSC 60

Query: 63  VCKCFCWTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFD 122
            CKC CWT  +I +LLI++G  +GILYLVF+P++P YSI+SL ISDLRLN DM+LYA+FD
Sbjct: 61  CCKCICWTVSLIVVLLIILGATIGILYLVFRPQLPKYSIDSLRISDLRLNFDMTLYAKFD 120

Query: 123 VKITAYNPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKG 182
           VKITA NPN+KIGIYYEKGG LSVWYT+ KLC+GSLP FY GH+N T LDV LTG+T  G
Sbjct: 121 VKITANNPNKKIGIYYEKGGRLSVWYTNSKLCEGSLPKFYQGHQNITKLDVVLTGQTQSG 180

Query: 183 NTLMAALVEQQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIK 237
           +TLM+AL EQQ+TG+IPL L+  APVAVKLG+LK++KVKILG C LVVDSLSANN ISIK
Sbjct: 181 STLMSALQEQQQTGQIPLDLKVHAPVAVKLGKLKMRKVKILGECKLVVDSLSANNIISIK 240

[Close]

BLAST of Cp4.1LG01g04880 vs. TrEMBL
Match: A0A061F5P5_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family OS=Theobroma cacao GN=TCM_025222 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 9.6e-75
Identity = 158/244 (64.75%), Postives = 186/244 (76.23%), Query Frame = 1


Query: 8   QRIHPVTDVERPPPPPPPPPPPSAP-----------PPKLLPSKKTRS----SCVCKCFC 67
           Q+IHPV DVE P P  P  PP SA            P + +P   TR     SC CKC C
Sbjct: 5   QKIHPVVDVEAPAPTVPLVPPGSATSEKGSPVQHRLPQRTIPVIHTRPPKKRSCCCKCIC 64

Query: 68  WTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFDVKITAY 127
           WT  +I LLLI++G  VGILYL F+PK+P YSI+SL ISDLRLN DM+LYA+FDVKITA 
Sbjct: 65  WTISLIVLLLIILGATVGILYLAFRPKLPKYSIDSLRISDLRLNFDMTLYAKFDVKITAN 124

Query: 128 NPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKGNTLMAA 187
           NPN+KIGIYYE+GG LSVWYT+ KLCQGSLP FY GH+N T LDV LTG+T  G+TLM+A
Sbjct: 125 NPNKKIGIYYEQGGRLSVWYTNSKLCQGSLPKFYQGHQNITKLDVVLTGQTEAGSTLMSA 184

Query: 188 LVEQQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIKASNCKF 237
           L EQQ+TG+IPL L+  APVA+KLG+LK++KV+ILG+C LVVDSLSANN ISIKASNCKF
Sbjct: 185 LQEQQQTGQIPLDLKVDAPVAIKLGKLKMRKVRILGDCKLVVDSLSANNIISIKASNCKF 244

[Close]

BLAST of Cp4.1LG01g04880 vs. TrEMBL
Match: U5FJJ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03470g PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73
Identity = 156/250 (62.40%), Postives = 185/250 (74.00%), Query Frame = 1


Query: 9   RIHPVTDVERPPPPPP--------------------PPPPPSAPPPKLLPSK--KTRSSC 68
           +IHP  DVE PPP  P                    PP P    P  +  SK  KTRS C
Sbjct: 7   KIHPAVDVEAPPPTAPLISRGLATSEKGGSSQSQQQPPLPLRTMPAAMQSSKPQKTRSCC 66

Query: 69  VCKCFCWTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFD 128
            CKC CWT  ++ LLL+++G   GILYLVFKPKIP YS++SL+ISDLRLN DMSLYA+FD
Sbjct: 67  -CKCVCWTVGLLVLLLVIVGATAGILYLVFKPKIPNYSVDSLSISDLRLNFDMSLYAKFD 126

Query: 129 VKITAYNPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKG 188
           VKITA NPN+KIGIYYEKGG+LSVWYT+ KLC GS+P FY GH+N T LDV LTG+T  G
Sbjct: 127 VKITANNPNKKIGIYYEKGGLLSVWYTNTKLCAGSIPKFYQGHQNITKLDVSLTGQTQYG 186

Query: 189 NTLMAALVEQQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIK 237
           +TL+ AL EQQ+TGRIPL L+  APV++KLG+LKL+KV ILG+CLLVVDSLS NN ISIK
Sbjct: 187 STLLRALQEQQQTGRIPLDLKVDAPVSIKLGRLKLRKVTILGDCLLVVDSLSTNNLISIK 246

[Close]

BLAST of Cp4.1LG01g04880 vs. TrEMBL
Match: A0A151RKK5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_035515 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.8e-73
Identity = 151/250 (60.40%), Postives = 186/250 (74.40%), Query Frame = 1


Query: 3   LADHL-QRIHPVTDVERPPPPPP--PP-------------PPPSAPPPKLLPSKKTRSSC 62
           +ADH  QRIHP+     PPP  P  PP             PPP    P   P+ K + SC
Sbjct: 1   MADHQRQRIHPMVGEAPPPPTTPLVPPGSSRSEKGLPLHHPPPLRAMPAAYPTPK-KGSC 60

Query: 63  VCKCFCWTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFD 122
            CKC CWT  ++ LLLI++   VGILYLVFKPK+P YS+++L ISDL LN DMSLYA+FD
Sbjct: 61  FCKCICWTISLLILLLIILAASVGILYLVFKPKLPDYSVDTLRISDLSLNFDMSLYAKFD 120

Query: 123 VKITAYNPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKG 182
           VKITA NPN+KIGIYYEKGG LSVWYT  +LC+GSLP FY GH+N+T L+V LTG+   G
Sbjct: 121 VKITANNPNKKIGIYYEKGGRLSVWYTSTRLCEGSLPQFYQGHQNKTVLNVSLTGQVQSG 180

Query: 183 NTLMAALVEQQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIK 237
           +TLM AL +QQ+TGR+PL L+  APVA+KLG+LKL+KV++LG C+LVVDSLS+NN +SIK
Sbjct: 181 STLMTALQQQQQTGRVPLDLKVHAPVAIKLGRLKLRKVRVLGECMLVVDSLSSNNLVSIK 240

[Close]

BLAST of Cp4.1LG01g04880 vs. TAIR10
Match: AT1G54540.1 (AT1G54540.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 231.5 bits (589), Expect = 5.4e-61
Identity = 125/237 (52.74%), Postives = 165/237 (69.62%), Query Frame = 1


Query: 8   QRIHPVTDVERPPPPPPPPPPPSAP--------PPKLLPSKKTRSSCVCKCFCWTFCVIF 67
           Q+IHPV  +E        P P            PP ++PSK  R+ C CK FCW   ++ 
Sbjct: 5   QKIHPVLQMEANKTKTTTPAPGKTVLLPVQRPIPPPVIPSKN-RNMC-CKIFCWVLSLLV 64

Query: 68  LLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFDVKITAYNPNEKIG 127
           + LI +   V ++Y VF PK+P+Y +NSL +++L +N+D+SL A F V+ITA NPNEKIG
Sbjct: 65  IALIALAIAVAVVYFVFHPKLPSYEVNSLRVTNLGINLDLSLSAEFKVEITARNPNEKIG 124

Query: 128 IYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKGNTLMAALVEQQRT 187
           IYYEKGG + VWY   KLC+G +P FY GHRN T L+V LTGR   GNT++AAL +QQ+T
Sbjct: 125 IYYEKGGHIGVWYDKTKLCEGPIPRFYQGHRNVTKLNVALTGRAQYGNTVLAALQQQQQT 184

Query: 188 GRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIKASNCKFRLKI 237
           GR+PL L+  APVA+KLG LK+KK++ILG+C LVVDSLS NN I+IKAS+C F+ K+
Sbjct: 185 GRVPLDLKVNAPVAIKLGNLKMKKIRILGSCKLVVDSLSTNNNINIKASDCSFKAKL 239

[Close]

BLAST of Cp4.1LG01g04880 vs. TAIR10
Match: AT5G36970.1 (AT5G36970.1 NDR1/HIN1-like 25)

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-54
Identity = 121/252 (48.02%), Postives = 164/252 (65.08%), Query Frame = 1


Query: 3   LADHLQRIHPVTDVERPPPPPPPPPP---------------PSAP--PPKLLPSKKTRSS 62
           ++DH Q+IHPV+D E PP P  P  P                +AP  PP+    KK   S
Sbjct: 1   MSDH-QKIHPVSDPEAPPHPTAPLVPRGSSRSEHGDPTKTQQAAPLDPPR---EKKGSRS 60

Query: 63  CVCKCFCWTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARF 122
           C C+C C+T  V+FLL++++G +VGILYLVF+PK P Y+I+ L ++  +LN D+SL   F
Sbjct: 61  CWCRCVCYTLLVLFLLIVIVGAIVGILYLVFRPKFPDYNIDRLQLTRFQLNQDLSLSTAF 120

Query: 123 DVKITAYNPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVK 182
           +V ITA NPNEKIGIYYE G  +SV Y   ++  GSLP FY GH N T + V++TG T  
Sbjct: 121 NVTITAKNPNEKIGIYYEDGSKISVLYMQTRISNGSLPKFYQGHENTTIILVEMTGFTQN 180

Query: 183 GNTLMAALVEQQR-TGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAIS 237
             +LM  L EQQR TG IPL++R   PV +KLG+LKL KV+ L  C + VDSL+AN+ I 
Sbjct: 181 ATSLMTTLQEQQRLTGSIPLRIRVTQPVRIKLGKLKLMKVRFLVRCGVSVDSLAANSVIR 240

[Close]

BLAST of Cp4.1LG01g04880 vs. TAIR10
Match: AT1G65690.1 (AT1G65690.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 119/248 (47.98%), Postives = 157/248 (63.31%), Query Frame = 1


Query: 8   QRIHPVTDVE----RPPPP------------PPPPPPPSAPPPKLLP--SKKTRSSCVCK 67
           Q+I+PV D E    RP  P             P   P +  P + +P    K R SC C+
Sbjct: 5   QKIYPVQDPEAATARPTAPLVPRGSSRSEHGDPSKVPLNQRPQRFVPLAPPKKRRSCCCR 64

Query: 68  CFCWTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFDVKI 127
           CFC+TFC + LL++ +G  +GILYLVFKPK+P YSI+ L ++   LN D SL   F+V I
Sbjct: 65  CFCYTFCFLLLLVVAVGASIGILYLVFKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTI 124

Query: 128 TAYNPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKGNTL 187
           TA NPNEKIGIYYE G  ++VWY + +L  GSLP FY GH N T + V++TG+T   + L
Sbjct: 125 TAKNPNEKIGIYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGL 184

Query: 188 MAALVE-QQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIKAS 237
              L E QQRTG IPL++R   PV VK G+LKL +V+ L  C + VDSL+ NN I I++S
Sbjct: 185 RTTLEEQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVDSLATNNVIKIQSS 244

[Close]

BLAST of Cp4.1LG01g04880 vs. TAIR10
Match: AT2G27080.1 (AT2G27080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 70/222 (31.53%), Postives = 119/222 (53.60%), Query Frame = 1


Query: 17  ERPPPPPPP-------------PPPPSAPPPKLLPSKKT-RSSCVCKCFCWTFCVIFLLL 76
           ++P PPP               PPP +A   + L  KKT RS+C C CFC     +F+L+
Sbjct: 28  KKPAPPPSTYVIQVPKDQIYRIPPPENAHRFEQLSRKKTNRSNCRC-CFCSFLAAVFILI 87

Query: 77  IVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFDVKITAYNPNEKIGIYY 136
           ++ G    +LYL+++P+ P YSI   ++S + LN    +   F+V + + N N KIG+YY
Sbjct: 88  VLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYY 147

Query: 137 EKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKGNTLMAALVEQQRTGR- 196
           EK   + V+Y D  +  G +P FY   +N T + + L+G  ++  + M   +  + + + 
Sbjct: 148 EKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKT 207

Query: 197 IPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAI 224
           +P +L+  APV +K G +K   + +  +C + VD L+A + I
Sbjct: 208 VPFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTVDKLTAPSRI 248

[Close]

BLAST of Cp4.1LG01g04880 vs. TAIR10
Match: AT5G21130.1 (AT5G21130.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 98.6 bits (244), Expect = 5.5e-21
Identity = 61/212 (28.77%), Postives = 108/212 (50.94%), Query Frame = 1


Query: 26  PPPPSAPPPKLLPSKKTRSSCVCKCFCWTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSI 85
           PPP +A   + L  +KT  SC  +C C++   + +++++     G  YLV++P  P +S+
Sbjct: 71  PPPENAHRYEYLSRRKTNKSCCRRCLCYSLSALLIIIVLAAIAFGFFYLVYQPHKPQFSV 130

Query: 86  NSLTISDLRLNVDMSLYARFDVKITAYNPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAF 145
           + ++++ + L           +K+ + N   K+G+ YEKG    V++   KL  G   AF
Sbjct: 131 SGVSVTGINLTSSSPFSPVIRIKLRSQNVKGKLGLIYEKGNEADVFFNGTKLGNGEFTAF 190

Query: 146 YHGHRNRTALDVDLTGRTVK-GNTLMAALVEQQRTGRIPLQLRAAAPVAVKLGQLKLKKV 205
                N T +   L G +VK  ++    L E Q+ G++P  LR  APV  K+G +    +
Sbjct: 191 KQPAGNVTVIVTVLKGSSVKLKSSSRKELTESQKKGKVPFGLRIKAPVKFKVGSVTTWTM 250

Query: 206 KILGNCLLVVDSLSANNAISIKASNCKFRLKI 237
            I  +C + VD L+A  + ++K  NC+  L +
Sbjct: 251 TITVDCKITVDKLTA--SATVKTENCETGLSL 280

[Close]

BLAST of Cp4.1LG01g04880 vs. NCBI nr
Match: gi|778708372|ref|XP_011656174.1| (PREDICTED: protein YLS9 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 5.8e-97
Identity = 188/240 (78.33%), Postives = 214/240 (89.17%), Query Frame = 1


Query: 1   MALADHLQRIHPVTDVERPPPPP----PPPPPPSAPPPKLLPSKKTRSSCVCKCFCWTFC 60
           MAL DH Q+IHP+TDVE PPPPP    PPPP   A   ++LP KK RS C+C+C C+TFC
Sbjct: 1   MALVDHHQKIHPLTDVEPPPPPPQSSAPPPPLEKALHHQILPPKKRRS-CLCRCLCYTFC 60

Query: 61  VIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFDVKITAYNPNE 120
           +I LLLI++G V+GILYLVFKPKIPT+SI+SL ISDLRLN DMSLYARFDVKIT YNPNE
Sbjct: 61  LILLLLIILGAVIGILYLVFKPKIPTFSIDSLNISDLRLNFDMSLYARFDVKITTYNPNE 120

Query: 121 KIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKGNTLMAALVEQ 180
           KIGIYYEKGGVLSVWYT+ KLC+GSLPAFYHGHRN+TALDV LTGRTV G+TLM+ALVEQ
Sbjct: 121 KIGIYYEKGGVLSVWYTENKLCEGSLPAFYHGHRNKTALDVVLTGRTVYGSTLMSALVEQ 180

Query: 181 QRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIKASNCKFRLKI 237
           Q+TGRIPLQL+A APVAVK+G++KLKKVKILGNCLLVVDSL+ANNAI+IKASNCKFRLK+
Sbjct: 181 QQTGRIPLQLQAVAPVAVKMGKMKLKKVKILGNCLLVVDSLTANNAITIKASNCKFRLKL 239

[Close]

BLAST of Cp4.1LG01g04880 vs. NCBI nr
Match: gi|659123471|ref|XP_008461681.1| (PREDICTED: uncharacterized protein LOC103500225 [Cucumis melo])

HSP 1 Score: 358.2 bits (918), Expect = 1.1e-95
Identity = 186/243 (76.54%), Postives = 213/243 (87.65%), Query Frame = 1


Query: 1   MALADHLQRIHPVTDVERPPPPPPPPPPPSAPPPK-------LLPSKKTRSSCVCKCFCW 60
           MAL DH Q+IHP+TDVE    PPPPPP  SAPPP+       +LP KK RS  +C+C C+
Sbjct: 1   MALVDHHQKIHPLTDVE----PPPPPPQSSAPPPEKAVHHQIILPPKKRRSY-LCRCLCY 60

Query: 61  TFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFDVKITAYN 120
           +FC+I L+LI++G V+GILYLVFKPKIPT+SI+SL ISDLRLN DMSLYARFDVKIT YN
Sbjct: 61  SFCLILLILIILGAVIGILYLVFKPKIPTFSIDSLNISDLRLNFDMSLYARFDVKITTYN 120

Query: 121 PNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKGNTLMAAL 180
           PNEKIGIYYEKGGVLSVWYT+ KLC+GSLP FYHGHRN+TALDV LTGRTV G+TLM+AL
Sbjct: 121 PNEKIGIYYEKGGVLSVWYTENKLCEGSLPEFYHGHRNKTALDVVLTGRTVYGSTLMSAL 180

Query: 181 VEQQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIKASNCKFR 237
           VEQQ+TGRIPLQLRA APVAVK+G++KLKKVKILGNCLLVVDSL+ANNAI+IKASNCKFR
Sbjct: 181 VEQQQTGRIPLQLRAVAPVAVKMGKMKLKKVKILGNCLLVVDSLTANNAITIKASNCKFR 238

[Close]

BLAST of Cp4.1LG01g04880 vs. NCBI nr
Match: gi|1009131560|ref|XP_015882906.1| (PREDICTED: protein YLS9-like [Ziziphus jujuba])

HSP 1 Score: 293.9 bits (751), Expect = 2.5e-76
Identity = 159/252 (63.10%), Postives = 192/252 (76.19%), Query Frame = 1


Query: 3   LADHLQRIHPVTDVERPPPPPPPPPPPSAPPPK-----------------LLPSKKTRS- 62
           +ADH QRIHP  DVE PP  PP  P P +   K                 ++P+K  ++ 
Sbjct: 1   MADH-QRIHPSVDVEAPPTAPPVAPHPPSTLEKGTAIQRSSSQLQPRAVPVIPAKPPKNR 60

Query: 63  SCVCKCFCWTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYAR 122
           SC CKC CWT  +I LLLI+IG  +GILYLVFKPK+P YSI+SL ISDLRLN DM+LYA+
Sbjct: 61  SCCCKCICWTVSLIVLLLIIIGATIGILYLVFKPKLPNYSIDSLRISDLRLNFDMTLYAK 120

Query: 123 FDVKITAYNPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTV 182
           FDVKITA NPN+KIGIYYE GG LSVWYT+ +LCQGSLP FY GH+N+T L+V LTG+T 
Sbjct: 121 FDVKITANNPNKKIGIYYETGGRLSVWYTNTQLCQGSLPNFYQGHQNKTVLNVALTGQTE 180

Query: 183 KGNTLMAALVEQQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAIS 237
            GNTLM AL +QQ+TGRIPL L+  APVA+KLG+LKL+KV+ILG C+LVVDSL++NN IS
Sbjct: 181 SGNTLMRALQDQQQTGRIPLDLKVDAPVAIKLGRLKLRKVRILGGCMLVVDSLTSNNLIS 240

[Close]

BLAST of Cp4.1LG01g04880 vs. NCBI nr
Match: gi|823256090|ref|XP_012460701.1| (PREDICTED: protein YLS9 [Gossypium raimondii])

HSP 1 Score: 293.1 bits (749), Expect = 4.3e-76
Identity = 159/250 (63.60%), Postives = 187/250 (74.80%), Query Frame = 1


Query: 3   LADHLQRIHPVTDVERPPPPPPPPPPPSAP----------------PPKLLPSKKTRSSC 62
           + DH QRIHPV DVE P P  P  P  SA                 P +  P    + SC
Sbjct: 1   MTDHQQRIHPVVDVEAPAPSTPLVPHGSATSEKGSPIQQRPLQRTIPVRPPPPPPRKRSC 60

Query: 63  VCKCFCWTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYARFD 122
            CKC CWT  +I +LLI++G  +GILYLVF+P++P YSI+SL ISDLRLN DM+LYA+FD
Sbjct: 61  CCKCICWTVSLIVVLLIILGATIGILYLVFRPQLPKYSIDSLRISDLRLNFDMTLYAKFD 120

Query: 123 VKITAYNPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTVKG 182
           VKITA NPN+KIGIYYEKGG LSVWYT+ KLC+GSLP FY GH+N T LDV LTG+T  G
Sbjct: 121 VKITANNPNKKIGIYYEKGGRLSVWYTNSKLCEGSLPKFYQGHQNITKLDVVLTGQTQSG 180

Query: 183 NTLMAALVEQQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAISIK 237
           +TLM+AL EQQ+TG+IPL L+  APVAVKLG+LK++KVKILG C LVVDSLSANN ISIK
Sbjct: 181 STLMSALQEQQQTGQIPLDLKVHAPVAVKLGKLKMRKVKILGECKLVVDSLSANNIISIK 240

[Close]

BLAST of Cp4.1LG01g04880 vs. NCBI nr
Match: gi|1009133336|ref|XP_015883846.1| (PREDICTED: protein YLS9 [Ziziphus jujuba])

HSP 1 Score: 291.2 bits (744), Expect = 1.6e-75
Identity = 158/252 (62.70%), Postives = 191/252 (75.79%), Query Frame = 1


Query: 3   LADHLQRIHPVTDVERPPPPPPPPPPPSAPPPK-----------------LLPSKKTRS- 62
           +ADH QRIHP  DVE PP  PP  P P +   K                 ++P+   ++ 
Sbjct: 1   MADH-QRIHPSVDVEAPPTAPPVAPHPPSTLEKGTAIQRSSSQLQPRAVPVIPAMPPKNR 60

Query: 63  SCVCKCFCWTFCVIFLLLIVIGGVVGILYLVFKPKIPTYSINSLTISDLRLNVDMSLYAR 122
           SC CKC CWT  +I LLLI+IG  +GILYLVFKPK+P YSI+SL ISDLRLN DM+LYA+
Sbjct: 61  SCCCKCICWTVSLIVLLLIIIGATIGILYLVFKPKLPNYSIDSLRISDLRLNFDMTLYAK 120

Query: 123 FDVKITAYNPNEKIGIYYEKGGVLSVWYTDKKLCQGSLPAFYHGHRNRTALDVDLTGRTV 182
           F VKITA NPN+KIGIYYEKGG LSVWYT+ +LCQGSLP FY GH+N+T L+V LTG+T 
Sbjct: 121 FGVKITANNPNKKIGIYYEKGGRLSVWYTNTQLCQGSLPNFYQGHQNKTVLNVALTGQTE 180

Query: 183 KGNTLMAALVEQQRTGRIPLQLRAAAPVAVKLGQLKLKKVKILGNCLLVVDSLSANNAIS 237
            GNTLM AL +QQ+TGRIPL L+  APVA+KLG+LKL+KV+ILG C+LVVDSL++NN IS
Sbjct: 181 SGNTLMRALQDQQQTGRIPLDLKVDAPVAIKLGRLKLRKVRILGGCMLVVDSLTSNNLIS 240

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g04880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL3_ARATH	1.2e-09	28.08	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]
NHL12_ARATH	3.6e-06	22.35	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g04880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ99_CUCSA	4.0e-97	78.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182130 PE=4 SV=1	[more]
A0A0D2V0U6_GOSRA	3.0e-76	63.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G027300 PE=4 SV=1	[more]
A0A061F5P5_THECC	9.6e-75	64.75	Late embryogenesis abundant hydroxyproline-rich glycoprotein family OS=Theobroma...	[more]
U5FJJ9_POPTR	1.4e-73	62.40	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03470g PE=4 SV=1	[more]
A0A151RKK5_CAJCA	1.8e-73	60.40	Uncharacterized protein OS=Cajanus cajan GN=KK1_035515 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g04880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54540.1	5.4e-61	52.74	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G36970.1	2.2e-54	48.02	NDR1/HIN1-like 25	[more]
AT1G65690.1	1.2e-52	47.98	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT2G27080.1	1.1e-21	31.53	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G21130.1	5.5e-21	28.77	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of Cp4.1LG01g04880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708372\|ref\|XP_011656174.1\|	5.8e-97	78.33	PREDICTED: protein YLS9 [Cucumis sativus]	[more]
gi\|659123471\|ref\|XP_008461681.1\|	1.1e-95	76.54	PREDICTED: uncharacterized protein LOC103500225 [Cucumis melo]	[more]
gi\|1009131560\|ref\|XP_015882906.1\|	2.5e-76	63.10	PREDICTED: protein YLS9-like [Ziziphus jujuba]	[more]
gi\|823256090\|ref\|XP_012460701.1\|	4.3e-76	63.60	PREDICTED: protein YLS9 [Gossypium raimondii]	[more]
gi\|1009133336\|ref\|XP_015883846.1\|	1.6e-75	62.70	PREDICTED: protein YLS9 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g04880.1	Cp4.1LG01g04880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 109..202 score: 6.
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 3..236 score: 3.9E
None	No IPR available	PANTHER	PTHR31852:SF48	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 3..236 score: 3.9E
None	No IPR available	unknown	SSF101447	Formin homology 2 domain (FH2 domain)	coord: 19..29 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g04880	Cucsa.165240	Cucumber (Gy14) v1	cgycpeB0457
Cp4.1LG01g04880	CmaCh04G002100	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g04880	CmoCh04G002100	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g04880	Cla004004	Watermelon (97103) v1	cpewmB403
Cp4.1LG01g04880	Csa5G182130	Cucumber (Chinese Long) v2	cpecuB438
Cp4.1LG01g04880	MELO3C023868	Melon (DHL92) v3.5.1	cpemeB378
Cp4.1LG01g04880	ClCG07G003430	Watermelon (Charleston Gray)	cpewcgB410
Cp4.1LG01g04880	CSPI05G09730	Wild cucumber (PI 183967)	cpecpiB438
Cp4.1LG01g04880	Lsi04G008900	Bottle gourd (USVL1VR-Ls)	cpelsiB359
Cp4.1LG01g04880	MELO3C023868.2	Melon (DHL92) v3.6.1	cpemedB438
Cp4.1LG01g04880	CsaV3_5G008170	Cucumber (Chinese Long) v3	cpecucB0542
Cp4.1LG01g04880	Bhi06G000854	Wax gourd	cpewgoB0503
Cp4.1LG01g04880	CsGy5G007070	Cucumber (Gy14) v2	cgybcpeB647
Cp4.1LG01g04880	Carg18324	Silver-seed gourd	carcpeB0130

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g04880	Cucumber (Gy14) v2	cgybcpeB364
Cp4.1LG01g04880	Cucumber (Gy14) v2	cgybcpeB510
Cp4.1LG01g04880	Cucumber (Gy14) v2	cgybcpeB795
Cp4.1LG01g04880	Melon (DHL92) v3.6.1	cpemedB451
Cp4.1LG01g04880	Melon (DHL92) v3.6.1	cpemedB476
Cp4.1LG01g04880	Melon (DHL92) v3.6.1	cpemedB506
Cp4.1LG01g04880	Silver-seed gourd	carcpeB0424
Cp4.1LG01g04880	Silver-seed gourd	carcpeB0467
Cp4.1LG01g04880	Silver-seed gourd	carcpeB0939
Cp4.1LG01g04880	Cucumber (Chinese Long) v3	cpecucB0485
Cp4.1LG01g04880	Cucumber (Chinese Long) v3	cpecucB0508
Cp4.1LG01g04880	Cucumber (Chinese Long) v3	cpecucB0566
Cp4.1LG01g04880	Wax gourd	cpewgoB0487
Cp4.1LG01g04880	Wax gourd	cpewgoB0543
Cp4.1LG01g04880	Cucurbita pepo (Zucchini)	cpecpeB072
Cp4.1LG01g04880	Cucurbita pepo (Zucchini)	cpecpeB374
Cp4.1LG01g04880	Cucurbita pepo (Zucchini)	cpecpeB381
Cp4.1LG01g04880	Cucurbita pepo (Zucchini)	cpecpeB386
Cp4.1LG01g04880	Cucurbita pepo (Zucchini)	cpecpeB401
Cp4.1LG01g04880	Cucurbita maxima (Rimu)	cmacpeB723
Cp4.1LG01g04880	Cucurbita moschata (Rifu)	cmocpeB675