Cla004004 (gene) Watermelon (97103) v1

Overview
NameCla004004
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionLate embryogenesis abundant hydroxyproline-rich glycoprotein (AHRD V1 **-- Q9SLI0_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1
LocationChr7 : 3579362 .. 3580567 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTTGCAGATCATCATCAGAGAATCCACCCAGTTACAGATGTTGAACCGCCACCACCGCGGTCGGCTCCGCTGCTAAATCGTCCCTCGCCATTGCCGGGAAAGGATGGCCAACACCAAATTCTCCCTCCAAAAAACAGAAGATCTTGCCTTTGCAGATGCTTATGTTGCACATTCTGTGTTATTTTACTTCTTCTTATCATCGTCGGAGCCGTCGTTGGAATTCTCTATCTTGTTTTCAAGCCCAAGATTCCGACGTTCTCCATCGACTCCTTGAACATCAACGATCTTCGACTTAATTTCGACATGTCACTCTATGCCAGGTTTTTGTTCAATATACTTAACAAAAAAAAACATTTTCTTCCGTGTAACATGGAGATTTAAACAATCGTCTACAAGTTTTATGGTCGTTAACATATATATTATATGTCAATTTAGAATACAGGAAATTAAGTTTAACGTTTTATTGTTGTTTTAGATCCCCCTATAACTTTCTATTTTGTTTTTTTAAAAAAGTTTAATGCAAAGATGCATGGTTGTTTCGATATAATCTTAAATTAACGCTTGCTTTAATCTTAAATTTAATTTCTTGATTAGGTGATTGTTTTTCTTTGACGAATTTATTTCCAAAATCATTGGTTTGAACTTGGAAATAATATTTTTAAAACATCATTTAAATCTTTTCAATTCTAAATTTTGCTAACAAATACATATTAAAAAACAACAAAACAAAATCATTTTATTATCTTCAAATTTTTGTTTCCAGATCGCTTATCAATTACTATTAATTCATATTTTAACAGGTTCGACGTGAAAATCACGACATACAACCCGAACCAGAAGATCGGAATATACTACGAAAAGGGAGGAGTTTTGAGCGTTTGGTACACAGAAAACAAGCTTTGTGAAGGGTTGTTGCCGGTGTTCTACCACGGCCACCGGAACAAGACGACGTTGGACGTGGTTTTGACCGGAAGGACGGTGTATGGAAGCACTTTGATGGCGGCATTGGTGGAGCAACAGCGGACCGGCCGCATTCCGCTGCAGCTCCGGGCGGTGGCGCCGGTGGCCGTGAAATTGGGGAAATTGAAGCTTAAGAAAGTTAAGATTTTAGGGAATTGTTTGTTGGTGGTGGATAGTTTGACTGCTAATAATGCCATTACTATTAAAGCTAGTAATTGTAAGTTTAGGTTAAAGCTTTGA

mRNA sequence

ATGGCCCTTGCAGATCATCATCAGAGAATCCACCCAGTTACAGATGTTGAACCGCCACCACCGCGGTCGGCTCCGCTGCTAAATCGTCCCTCGCCATTGCCGGGAAAGGATGGCCAACACCAAATTCTCCCTCCAAAAAACAGAAGATCTTGCCTTTGCAGATGCTTATGTTGCACATTCTGTGTTATTTTACTTCTTCTTATCATCGTCGGAGCCGTCGTTGGAATTCTCTATCTTGTTTTCAAGCCCAAGATTCCGACGTTCTCCATCGACTCCTTGAACATCAACGATCTTCGACTTAATTTCGACATGTCACTCTATGCCAGGTTCGACGTGAAAATCACGACATACAACCCGAACCAGAAGATCGGAATATACTACGAAAAGGGAGGAGTTTTGAGCGTTTGGTACACAGAAAACAAGCTTTGTGAAGGGTTGTTGCCGGTGTTCTACCACGGCCACCGGAACAAGACGACGTTGGACGTGGTTTTGACCGGAAGGACGGTGTATGGAAGCACTTTGATGGCGGCATTGGTGGAGCAACAGCGGACCGGCCGCATTCCGCTGCAGCTCCGGGCGGTGGCGCCGGTGGCCGTGAAATTGGGGAAATTGAAGCTTAAGAAAGTTAAGATTTTAGGGAATTGTTTGTTGGTGGTGGATAGTTTGACTGCTAATAATGCCATTACTATTAAAGCTAGTAATTGTAAGTTTAGGTTAAAGCTTTGA

Coding sequence (CDS)

ATGGCCCTTGCAGATCATCATCAGAGAATCCACCCAGTTACAGATGTTGAACCGCCACCACCGCGGTCGGCTCCGCTGCTAAATCGTCCCTCGCCATTGCCGGGAAAGGATGGCCAACACCAAATTCTCCCTCCAAAAAACAGAAGATCTTGCCTTTGCAGATGCTTATGTTGCACATTCTGTGTTATTTTACTTCTTCTTATCATCGTCGGAGCCGTCGTTGGAATTCTCTATCTTGTTTTCAAGCCCAAGATTCCGACGTTCTCCATCGACTCCTTGAACATCAACGATCTTCGACTTAATTTCGACATGTCACTCTATGCCAGGTTCGACGTGAAAATCACGACATACAACCCGAACCAGAAGATCGGAATATACTACGAAAAGGGAGGAGTTTTGAGCGTTTGGTACACAGAAAACAAGCTTTGTGAAGGGTTGTTGCCGGTGTTCTACCACGGCCACCGGAACAAGACGACGTTGGACGTGGTTTTGACCGGAAGGACGGTGTATGGAAGCACTTTGATGGCGGCATTGGTGGAGCAACAGCGGACCGGCCGCATTCCGCTGCAGCTCCGGGCGGTGGCGCCGGTGGCCGTGAAATTGGGGAAATTGAAGCTTAAGAAAGTTAAGATTTTAGGGAATTGTTTGTTGGTGGTGGATAGTTTGACTGCTAATAATGCCATTACTATTAAAGCTAGTAATTGTAAGTTTAGGTTAAAGCTTTGA

Protein sequence

MALADHHQRIHPVTDVEPPPPRSAPLLNRPSPLPGKDGQHQILPPKNRRSCLCRCLCCTFCVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARFDVKITTYNPNQKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVYGSTLMAALVEQQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITIKASNCKFRLKL
Homology
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BLAST of Cla004004 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-10
Identity = 35/121 (28.93%), Postives = 58/121 (47.93%), Query Frame = 1 

Query: 51  CLCRCLCCTFCVILLLLIIVGAVVGI----LYLVFKPKIPTFSIDSLNINDLRLNFDMSL 110
           CL  C CC   VI  +LI +  ++GI    ++L+F+P    F +    + +  L+   +L
Sbjct: 36  CLGCCGCCILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNL 95

Query: 111 YARFDVKITTYNPNQKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTG 168
               D+  T  NPN++IG+YY++  V   +  +       +  FY GH+N T +   L G
Sbjct: 96  RYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVG 155

[Close]
BLAST of Cla004004 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.9e-08
Identity = 42/179 (23.46%), Postives = 79/179 (44.13%), Query Frame = 1 

Query: 62  VILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARFDVKITTYNPNQ 121
           VI+  +IIV   + +++++ +P  P F +    +    L+    L + F + I + N N 
Sbjct: 24  VIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRNRNS 83

Query: 122 KIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVYGSTLMA-ALVE 181
           +IGIYY++  V + +  +       +P  Y GH+        + G +V  +   A AL +
Sbjct: 84  RIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGD 143

Query: 182 QQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITIKASNCKFRL 240
           +Q  G + L +RA   V  K+G L   K  +   C   ++       + +  +  K+ L
Sbjct: 144 EQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAGVHVGENAVKYML 202

[Close]
BLAST of Cla004004 vs. TrEMBL
Match: A0A0A0KQ99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182130 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 2.0e-115
Identity = 209/241 (86.72%), Postives = 222/241 (92.12%), Query Frame = 1 

Query: 1   MALADHHQRIHPVTDVEPPPPRSAPLLNRPSPLPGKDGQHQILPPKNRRSCLCRCLCCTF 60
           MAL DHHQ+IHP+TDVEPPPP   P  + P P   K   HQILPPK RRSCLCRCLC TF
Sbjct: 1   MALVDHHQKIHPLTDVEPPPP--PPQSSAPPPPLEKALHHQILPPKKRRSCLCRCLCYTF 60

Query: 61  CVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARFDVKITTYNPN 120
           C+ILLLLII+GAV+GILYLVFKPKIPTFSIDSLNI+DLRLNFDMSLYARFDVKITTYNPN
Sbjct: 61  CLILLLLIILGAVIGILYLVFKPKIPTFSIDSLNISDLRLNFDMSLYARFDVKITTYNPN 120

Query: 121 QKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVYGSTLMAALVE 180
           +KIGIYYEKGGVLSVWYTENKLCEG LP FYHGHRNKT LDVVLTGRTVYGSTLM+ALVE
Sbjct: 121 EKIGIYYEKGGVLSVWYTENKLCEGSLPAFYHGHRNKTALDVVLTGRTVYGSTLMSALVE 180

Query: 181 QQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITIKASNCKFRLK 240
           QQ+TGRIPLQL+AVAPVAVK+GK+KLKKVKILGNCLLVVDSLTANNAITIKASNCKFRLK
Sbjct: 181 QQQTGRIPLQLQAVAPVAVKMGKMKLKKVKILGNCLLVVDSLTANNAITIKASNCKFRLK 239

Query: 241 L 242
           L
Sbjct: 241 L 239

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BLAST of Cla004004 vs. TrEMBL
Match: A0A0D2V0U6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G027300 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.8e-84
Identity = 164/251 (65.34%), Postives = 196/251 (78.09%), Query Frame = 1 

Query: 3   LADHHQRIHPVTDVEPPPPRSAPLL-------NRPSPLPGKDGQHQIL-----PPKNRRS 62
           + DH QRIHPV DVE P P S PL+        + SP+  +  Q  I      PP  +RS
Sbjct: 1   MTDHQQRIHPVVDVEAPAP-STPLVPHGSATSEKGSPIQQRPLQRTIPVRPPPPPPRKRS 60

Query: 63  CLCRCLCCTFCVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARF 122
           C C+C+C T  +I++LLII+GA +GILYLVF+P++P +SIDSL I+DLRLNFDM+LYA+F
Sbjct: 61  CCCKCICWTVSLIVVLLIILGATIGILYLVFRPQLPKYSIDSLRISDLRLNFDMTLYAKF 120

Query: 123 DVKITTYNPNQKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVY 182
           DVKIT  NPN+KIGIYYEKGG LSVWYT +KLCEG LP FY GH+N T LDVVLTG+T  
Sbjct: 121 DVKITANNPNKKIGIYYEKGGRLSVWYTNSKLCEGSLPKFYQGHQNITKLDVVLTGQTQS 180

Query: 183 GSTLMAALVEQQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITI 242
           GSTLM+AL EQQ+TG+IPL L+  APVAVKLGKLK++KVKILG C LVVDSL+ANN I+I
Sbjct: 181 GSTLMSALQEQQQTGQIPLDLKVHAPVAVKLGKLKMRKVKILGECKLVVDSLSANNIISI 240

[Close]
BLAST of Cla004004 vs. TrEMBL
Match: U5FJJ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03470g PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.8e-81
Identity = 156/250 (62.40%), Postives = 189/250 (75.60%), Query Frame = 1 

Query: 9   RIHPVTDVEPPPPRSAPLLNR-----------------PSPLPGKDGQHQILPPKNRRSC 68
           +IHP  DVE PPP +APL++R                 P PL       Q   P+  RSC
Sbjct: 7   KIHPAVDVEAPPP-TAPLISRGLATSEKGGSSQSQQQPPLPLRTMPAAMQSSKPQKTRSC 66

Query: 69  LCRCLCCTFCVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARFD 128
            C+C+C T  +++LLL+IVGA  GILYLVFKPKIP +S+DSL+I+DLRLNFDMSLYA+FD
Sbjct: 67  CCKCVCWTVGLLVLLLVIVGATAGILYLVFKPKIPNYSVDSLSISDLRLNFDMSLYAKFD 126

Query: 129 VKITTYNPNQKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVYG 188
           VKIT  NPN+KIGIYYEKGG+LSVWYT  KLC G +P FY GH+N T LDV LTG+T YG
Sbjct: 127 VKITANNPNKKIGIYYEKGGLLSVWYTNTKLCAGSIPKFYQGHQNITKLDVSLTGQTQYG 186

Query: 189 STLMAALVEQQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITIK 242
           STL+ AL EQQ+TGRIPL L+  APV++KLG+LKL+KV ILG+CLLVVDSL+ NN I+IK
Sbjct: 187 STLLRALQEQQQTGRIPLDLKVDAPVSIKLGRLKLRKVTILGDCLLVVDSLSTNNLISIK 246

[Close]
BLAST of Cla004004 vs. TrEMBL
Match: A0A061F5P5_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family OS=Theobroma cacao GN=TCM_025222 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 7.8e-80
Identity = 157/245 (64.08%), Postives = 192/245 (78.37%), Query Frame = 1 

Query: 8   QRIHPVTDVEPPPPRSAPLLNRPSPLPGKDG--QHQI----LP-----PKNRRSCLCRCL 67
           Q+IHPV DVE P P + PL+   S    K    QH++    +P     P  +RSC C+C+
Sbjct: 5   QKIHPVVDVEAPAP-TVPLVPPGSATSEKGSPVQHRLPQRTIPVIHTRPPKKRSCCCKCI 64

Query: 68  CCTFCVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARFDVKITT 127
           C T  +I+LLLII+GA VGILYL F+PK+P +SIDSL I+DLRLNFDM+LYA+FDVKIT 
Sbjct: 65  CWTISLIVLLLIILGATVGILYLAFRPKLPKYSIDSLRISDLRLNFDMTLYAKFDVKITA 124

Query: 128 YNPNQKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVYGSTLMA 187
            NPN+KIGIYYE+GG LSVWYT +KLC+G LP FY GH+N T LDVVLTG+T  GSTLM+
Sbjct: 125 NNPNKKIGIYYEQGGRLSVWYTNSKLCQGSLPKFYQGHQNITKLDVVLTGQTEAGSTLMS 184

Query: 188 ALVEQQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITIKASNCK 242
           AL EQQ+TG+IPL L+  APVA+KLGKLK++KV+ILG+C LVVDSL+ANN I+IKASNCK
Sbjct: 185 ALQEQQQTGQIPLDLKVDAPVAIKLGKLKMRKVRILGDCKLVVDSLSANNIISIKASNCK 244

[Close]
BLAST of Cla004004 vs. TrEMBL
Match: B9H298_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06570g PE=4 SV=2)

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 157/253 (62.06%), Postives = 188/253 (74.31%), Query Frame = 1 

Query: 7   HQRIHPVTDVEPPPPRSAPLLNRPSPLPGKDGQH--QILPPKNRRS-------------- 66
           +QRIHP  DVE PP  +APL+ R     GK      Q  PP + R+              
Sbjct: 4   NQRIHPAVDVEAPP-LAAPLVLRGLVASGKRSSSLSQQQPPLSLRTIPAVMQGSKLSQTT 63

Query: 67  --CLCRCLCCTFCVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYA 126
             C C+C+C T  +++LLL IVGA  GILYLVFKPKIP +S+DSL I+DLRLNFDM+LYA
Sbjct: 64  SCCCCKCICWTVGLLVLLLGIVGATAGILYLVFKPKIPNYSVDSLRISDLRLNFDMTLYA 123

Query: 127 RFDVKITTYNPNQKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRT 186
            FDVKIT  NPN+KIGIYYEKGG+LSVWYT+ KLC+G +P FY GH+N T LDV LTG+T
Sbjct: 124 TFDVKITANNPNKKIGIYYEKGGLLSVWYTDTKLCQGSIPKFYQGHQNITKLDVSLTGQT 183

Query: 187 VYGSTLMAALVEQQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAI 242
            YGSTLM  L EQQ+TGRIPL L+  APV++KLG+LKL+KV+ILGNCLLVV+SL+ NN I
Sbjct: 184 RYGSTLMRTLQEQQQTGRIPLDLKIDAPVSIKLGRLKLRKVRILGNCLLVVNSLSTNNLI 243

[Close]
BLAST of Cla004004 vs. NCBI nr
Match: gi|778708372|ref|XP_011656174.1| (PREDICTED: protein YLS9 [Cucumis sativus])

HSP 1 Score: 423.3 bits (1087), Expect = 2.8e-115
Identity = 209/241 (86.72%), Postives = 222/241 (92.12%), Query Frame = 1 

Query: 1   MALADHHQRIHPVTDVEPPPPRSAPLLNRPSPLPGKDGQHQILPPKNRRSCLCRCLCCTF 60
           MAL DHHQ+IHP+TDVEPPPP   P  + P P   K   HQILPPK RRSCLCRCLC TF
Sbjct: 1   MALVDHHQKIHPLTDVEPPPP--PPQSSAPPPPLEKALHHQILPPKKRRSCLCRCLCYTF 60

Query: 61  CVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARFDVKITTYNPN 120
           C+ILLLLII+GAV+GILYLVFKPKIPTFSIDSLNI+DLRLNFDMSLYARFDVKITTYNPN
Sbjct: 61  CLILLLLIILGAVIGILYLVFKPKIPTFSIDSLNISDLRLNFDMSLYARFDVKITTYNPN 120

Query: 121 QKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVYGSTLMAALVE 180
           +KIGIYYEKGGVLSVWYTENKLCEG LP FYHGHRNKT LDVVLTGRTVYGSTLM+ALVE
Sbjct: 121 EKIGIYYEKGGVLSVWYTENKLCEGSLPAFYHGHRNKTALDVVLTGRTVYGSTLMSALVE 180

Query: 181 QQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITIKASNCKFRLK 240
           QQ+TGRIPLQL+AVAPVAVK+GK+KLKKVKILGNCLLVVDSLTANNAITIKASNCKFRLK
Sbjct: 181 QQQTGRIPLQLQAVAPVAVKMGKMKLKKVKILGNCLLVVDSLTANNAITIKASNCKFRLK 239

Query: 241 L 242
           L
Sbjct: 241 L 239

[Close]
BLAST of Cla004004 vs. NCBI nr
Match: gi|659123471|ref|XP_008461681.1| (PREDICTED: uncharacterized protein LOC103500225 [Cucumis melo])

HSP 1 Score: 411.8 bits (1057), Expect = 8.4e-112
Identity = 206/242 (85.12%), Postives = 220/242 (90.91%), Query Frame = 1 

Query: 1   MALADHHQRIHPVTDVEPPPPRSAPLLNRPSPLPGKDGQHQI-LPPKNRRSCLCRCLCCT 60
           MAL DHHQ+IHP+TDVEPPPP         +P P K   HQI LPPK RRS LCRCLC +
Sbjct: 1   MALVDHHQKIHPLTDVEPPPPPP----QSSAPPPEKAVHHQIILPPKKRRSYLCRCLCYS 60

Query: 61  FCVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARFDVKITTYNP 120
           FC+ILL+LII+GAV+GILYLVFKPKIPTFSIDSLNI+DLRLNFDMSLYARFDVKITTYNP
Sbjct: 61  FCLILLILIILGAVIGILYLVFKPKIPTFSIDSLNISDLRLNFDMSLYARFDVKITTYNP 120

Query: 121 NQKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVYGSTLMAALV 180
           N+KIGIYYEKGGVLSVWYTENKLCEG LP FYHGHRNKT LDVVLTGRTVYGSTLM+ALV
Sbjct: 121 NEKIGIYYEKGGVLSVWYTENKLCEGSLPEFYHGHRNKTALDVVLTGRTVYGSTLMSALV 180

Query: 181 EQQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITIKASNCKFRL 240
           EQQ+TGRIPLQLRAVAPVAVK+GK+KLKKVKILGNCLLVVDSLTANNAITIKASNCKFRL
Sbjct: 181 EQQQTGRIPLQLRAVAPVAVKMGKMKLKKVKILGNCLLVVDSLTANNAITIKASNCKFRL 238

Query: 241 KL 242
           KL
Sbjct: 241 KL 238

[Close]
BLAST of Cla004004 vs. NCBI nr
Match: gi|823256090|ref|XP_012460701.1| (PREDICTED: protein YLS9 [Gossypium raimondii])

HSP 1 Score: 320.5 bits (820), Expect = 2.6e-84
Identity = 164/251 (65.34%), Postives = 196/251 (78.09%), Query Frame = 1 

Query: 3   LADHHQRIHPVTDVEPPPPRSAPLL-------NRPSPLPGKDGQHQIL-----PPKNRRS 62
           + DH QRIHPV DVE P P S PL+        + SP+  +  Q  I      PP  +RS
Sbjct: 1   MTDHQQRIHPVVDVEAPAP-STPLVPHGSATSEKGSPIQQRPLQRTIPVRPPPPPPRKRS 60

Query: 63  CLCRCLCCTFCVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARF 122
           C C+C+C T  +I++LLII+GA +GILYLVF+P++P +SIDSL I+DLRLNFDM+LYA+F
Sbjct: 61  CCCKCICWTVSLIVVLLIILGATIGILYLVFRPQLPKYSIDSLRISDLRLNFDMTLYAKF 120

Query: 123 DVKITTYNPNQKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVY 182
           DVKIT  NPN+KIGIYYEKGG LSVWYT +KLCEG LP FY GH+N T LDVVLTG+T  
Sbjct: 121 DVKITANNPNKKIGIYYEKGGRLSVWYTNSKLCEGSLPKFYQGHQNITKLDVVLTGQTQS 180

Query: 183 GSTLMAALVEQQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITI 242
           GSTLM+AL EQQ+TG+IPL L+  APVAVKLGKLK++KVKILG C LVVDSL+ANN I+I
Sbjct: 181 GSTLMSALQEQQQTGQIPLDLKVHAPVAVKLGKLKMRKVKILGECKLVVDSLSANNIISI 240

[Close]
BLAST of Cla004004 vs. NCBI nr
Match: gi|566211127|ref|XP_006372637.1| (hypothetical protein POPTR_0017s03470g [Populus trichocarpa])

HSP 1 Score: 310.5 bits (794), Expect = 2.7e-81
Identity = 156/250 (62.40%), Postives = 189/250 (75.60%), Query Frame = 1 

Query: 9   RIHPVTDVEPPPPRSAPLLNR-----------------PSPLPGKDGQHQILPPKNRRSC 68
           +IHP  DVE PPP +APL++R                 P PL       Q   P+  RSC
Sbjct: 7   KIHPAVDVEAPPP-TAPLISRGLATSEKGGSSQSQQQPPLPLRTMPAAMQSSKPQKTRSC 66

Query: 69  LCRCLCCTFCVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARFD 128
            C+C+C T  +++LLL+IVGA  GILYLVFKPKIP +S+DSL+I+DLRLNFDMSLYA+FD
Sbjct: 67  CCKCVCWTVGLLVLLLVIVGATAGILYLVFKPKIPNYSVDSLSISDLRLNFDMSLYAKFD 126

Query: 129 VKITTYNPNQKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVYG 188
           VKIT  NPN+KIGIYYEKGG+LSVWYT  KLC G +P FY GH+N T LDV LTG+T YG
Sbjct: 127 VKITANNPNKKIGIYYEKGGLLSVWYTNTKLCAGSIPKFYQGHQNITKLDVSLTGQTQYG 186

Query: 189 STLMAALVEQQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITIK 242
           STL+ AL EQQ+TGRIPL L+  APV++KLG+LKL+KV ILG+CLLVVDSL+ NN I+IK
Sbjct: 187 STLLRALQEQQQTGRIPLDLKVDAPVSIKLGRLKLRKVTILGDCLLVVDSLSTNNLISIK 246

[Close]
BLAST of Cla004004 vs. NCBI nr
Match: gi|1009133336|ref|XP_015883846.1| (PREDICTED: protein YLS9 [Ziziphus jujuba])

HSP 1 Score: 309.7 bits (792), Expect = 4.5e-81
Identity = 156/249 (62.65%), Postives = 189/249 (75.90%), Query Frame = 1 

Query: 7   HQRIHPVTDVEPPP------PRSAPLLNRPSPLPGKDGQHQ--------ILPPKNRRSCL 66
           HQRIHP  DVE PP      P     L + + +     Q Q         +PPKN RSC 
Sbjct: 4   HQRIHPSVDVEAPPTAPPVAPHPPSTLEKGTAIQRSSSQLQPRAVPVIPAMPPKN-RSCC 63

Query: 67  CRCLCCTFCVILLLLIIVGAVVGILYLVFKPKIPTFSIDSLNINDLRLNFDMSLYARFDV 126
           C+C+C T  +I+LLLII+GA +GILYLVFKPK+P +SIDSL I+DLRLNFDM+LYA+F V
Sbjct: 64  CKCICWTVSLIVLLLIIIGATIGILYLVFKPKLPNYSIDSLRISDLRLNFDMTLYAKFGV 123

Query: 127 KITTYNPNQKIGIYYEKGGVLSVWYTENKLCEGLLPVFYHGHRNKTTLDVVLTGRTVYGS 186
           KIT  NPN+KIGIYYEKGG LSVWYT  +LC+G LP FY GH+NKT L+V LTG+T  G+
Sbjct: 124 KITANNPNKKIGIYYEKGGRLSVWYTNTQLCQGSLPNFYQGHQNKTVLNVALTGQTESGN 183

Query: 187 TLMAALVEQQRTGRIPLQLRAVAPVAVKLGKLKLKKVKILGNCLLVVDSLTANNAITIKA 242
           TLM AL +QQ+TGRIPL L+  APVA+KLG+LKL+KV+ILG C+LVVDSLT+NN I+IKA
Sbjct: 184 TLMRALQDQQQTGRIPLDLKVDAPVAIKLGRLKLRKVRILGGCMLVVDSLTSNNLISIKA 243

The following BLAST results are available for this feature:
BLAST of Cla004004 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NHL3_ARATH2.4e-1028.93NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1[more]
NHL12_ARATH3.9e-0823.46NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1[more]
BLAST of Cla004004 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ99_CUCSA2.0e-11586.72Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182130 PE=4 SV=1[more]
A0A0D2V0U6_GOSRA1.8e-8465.34Uncharacterized protein OS=Gossypium raimondii GN=B456_012G027300 PE=4 SV=1[more]
U5FJJ9_POPTR1.8e-8162.40Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03470g PE=4 SV=1[more]
A0A061F5P5_THECC7.8e-8064.08Late embryogenesis abundant hydroxyproline-rich glycoprotein family OS=Theobroma... [more]
B9H298_POPTR1.5e-7862.06Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06570g PE=4 SV=2[more]
BLAST of Cla004004 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708372|ref|XP_011656174.1|2.8e-11586.72PREDICTED: protein YLS9 [Cucumis sativus][more]
gi|659123471|ref|XP_008461681.1|8.4e-11285.12PREDICTED: uncharacterized protein LOC103500225 [Cucumis melo][more]
gi|823256090|ref|XP_012460701.1|2.6e-8465.34PREDICTED: protein YLS9 [Gossypium raimondii][more]
gi|566211127|ref|XP_006372637.1|2.7e-8162.40hypothetical protein POPTR_0017s03470g [Populus trichocarpa][more]
gi|1009133336|ref|XP_015883846.1|4.5e-8162.65PREDICTED: protein YLS9 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004864LEA_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004004Cla004004.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004864Late embryogenesis abundant protein, LEA-14PFAMPF03168LEA_2coord: 114..210
score: 1.
NoneNo IPR availablePANTHERPTHR31852FAMILY NOT NAMEDcoord: 8..241
score: 3.1E
NoneNo IPR availablePANTHERPTHR31852:SF48LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEINcoord: 8..241
score: 3.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla004004Cla97C07G131720Watermelon (97103) v2wmwmbB177
Cla004004Csa5G182130Cucumber (Chinese Long) v2cuwmB391
Cla004004MELO3C023868Melon (DHL92) v3.5.1mewmB055
Cla004004ClCG07G003430Watermelon (Charleston Gray)wcgwmB375
Cla004004CSPI05G09730Wild cucumber (PI 183967)cpiwmB399
Cla004004Cucsa.165240Cucumber (Gy14) v1cgywmB306
Cla004004CmaCh04G002100Cucurbita maxima (Rimu)cmawmB679
Cla004004CmoCh04G002100Cucurbita moschata (Rifu)cmowmB673
Cla004004Lsi04G008900Bottle gourd (USVL1VR-Ls)lsiwmB307
Cla004004Cp4.1LG01g04880Cucurbita pepo (Zucchini)cpewmB403
Cla004004CsGy5G007070Cucumber (Gy14) v2cgybwmB365
Cla004004MELO3C023868.2Melon (DHL92) v3.6.1medwmB057
Cla004004Carg18324Silver-seed gourdcarwmB0087
Cla004004CsaV3_5G008170Cucumber (Chinese Long) v3cucwmB416
Cla004004Bhi06G000854Wax gourdwgowmB129
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla004004Silver-seed gourdcarwmB0253
Cla004004Silver-seed gourdcarwmB0441
Cla004004Silver-seed gourdcarwmB0663
Cla004004Cucumber (Chinese Long) v3cucwmB040
Cla004004Cucumber (Chinese Long) v3cucwmB419
Cla004004Cucumber (Chinese Long) v3cucwmB230
Cla004004Watermelon (97103) v2wmwmbB160
Cla004004Watermelon (97103) v2wmwmbB149
Cla004004Watermelon (97103) v2wmwmbB155
Cla004004Wax gourdwgowmB043
Cla004004Wax gourdwgowmB371
Cla004004Wax gourdwgowmB492
Cla004004Watermelon (97103) v1wmwmB015
Cla004004Watermelon (97103) v1wmwmB044
Cla004004Watermelon (97103) v1wmwmB080
Cla004004Watermelon (97103) v1wmwmB106
Cla004004Watermelon (97103) v1wmwmB108
Cla004004Cucumber (Gy14) v1cgywmB063
Cla004004Cucumber (Gy14) v1cgywmB243
Cla004004Cucumber (Gy14) v1cgywmB337
Cla004004Cucurbita maxima (Rimu)cmawmB518
Cla004004Cucurbita maxima (Rimu)cmawmB624
Cla004004Cucurbita maxima (Rimu)cmawmB678
Cla004004Cucurbita moschata (Rifu)cmowmB508
Cla004004Cucurbita moschata (Rifu)cmowmB615
Cla004004Cucurbita moschata (Rifu)cmowmB672
Cla004004Melon (DHL92) v3.5.1mewmB366
Cla004004Melon (DHL92) v3.5.1mewmB566
Cla004004Watermelon (Charleston Gray)wcgwmB025
Cla004004Watermelon (Charleston Gray)wcgwmB067
Cla004004Watermelon (Charleston Gray)wcgwmB187
Cla004004Watermelon (Charleston Gray)wcgwmB253
Cla004004Cucumber (Chinese Long) v2cuwmB224
Cla004004Cucumber (Chinese Long) v2cuwmB033
Cla004004Cucumber (Chinese Long) v2cuwmB394
Cla004004Cucumber (Chinese Long) v2cuwmB487
Cla004004Cucurbita pepo (Zucchini)cpewmB404
Cla004004Cucurbita pepo (Zucchini)cpewmB702
Cla004004Melon (DHL92) v3.6.1medwmB555
Cla004004Bottle gourd (USVL1VR-Ls)lsiwmB058
Cla004004Cucumber (Gy14) v2cgybwmB210
Cla004004Cucumber (Gy14) v2cgybwmB457