Cp4.1LG01g04110 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g04110
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGNAT family acetyltransferase
LocationCp4.1LG01 : 1467740 .. 1468695 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATAATTATAAGTTTTCAATAATTACATTTATACCCTTGATATAAAAGAAGAAAAAATGTTTAAAATAGCTTTATTGTTAGTATATTCTTTCTTCTTCTTCTTTTTTTTTTTTTTTTATGTTCTTTAATATTGATTTAACAATATTGTACGTTGAGTGTAAATATTACAAAAATAATGATAATAATAATAATAATAAGTTGATAATTTGAGTCATAATTTTAATAATGAGTAGCTAAGATTATCATATTTATAGAGATGAAGAATTGGTTGATTATTTGGAGTTGATTGAAATAATGGAAGTCCAAGTGTAACTATGAGTGATGACGACACAATTAGCGAGGTTTGCATTCTATGCCCATCGCCTTCTGGGTTCCCTTTGGATCTACGCCGCCATCGCCTCCTTCCCCGCCATTTCAGACCCATTTCTTCATACCCATTTCCCCTTTTCCTCTTCAAAACCTCTGAACAATCACACCTTCAAAACCTCATCGGGGATTTCAGCTATTTTCAGGAATCGGAATCTGGGTCCATCTGGGTTCGGGTTATGAGGGACGATGAACTCGACCCCATTGTTGGGCTGCTCGCTCTCCATCTTCTGAAGCTATGCTACATGACAGTTAAAAAGGAGGTTCAGCTTCGGAGGTATGTTTCTGCACCCATAATTGTTAATGTTTAATTTGCTTTGATCCTTACCGTTCTGGATTCTGGACTTGTCCCCTGGATTGCATTAAGGGTATAACCAAGTTTTATAACTAGGATTTCAAAACTTGATTCAAATTTCTGCCAACATAGCATGGTTAAGACACTATATAAGATTACCTTCATTGTAGAATGATTCACACACCTCCTTTCAACATGTATACAATATTAATCTTGTTGATGCTGCAGAGGCGCAAGCACTTGATGTGTAAGAAGCTTCCTGCCATCACCGTCACCACAGCCCTTCTGAACTGA

mRNA sequence

AAATAATTATAAGTTTTCAATAATTACATTTATACCCTTGATATAAAAGAAGAAAAAATGTTTAAAATAGCTTTATTGTTAGTATATTCTTTCTTCTTCTTCTTTTTTTTTTTTTTTTATGTTCTTTAATATTGATTTAACAATATTGTACGTTGAGTGTAAATATTACAAAAATAATGATAATAATAATAATAATAAGTTGATAATTTGAGTCATAATTTTAATAATGAGTAGCTAAGATTATCATATTTATAGAGATGAAGAATTGGTTGATTATTTGGAGTTGATTGAAATAATGGAAGTCCAAGTGTAACTATGAGTGATGACGACACAATTAGCGAGGTTTGCATTCTATGCCCATCGCCTTCTGGGTTCCCTTTGGATCTACGCCGCCATCGCCTCCTTCCCCGCCATTTCAGACCCATTTCTTCATACCCATTTCCCCTTTTCCTCTTCAAAACCTCTGAACAATCACACCTTCAAAACCTCATCGGGGATTTCAGCTATTTTCAGGAATCGGAATCTGGGTCCATCTGGGTTCGGGTTATGAGGGACGATGAACTCGACCCCATTGTTGGGCTGCTCGCTCTCCATCTTCTGAAGCTATGCTACATGACAGTTAAAAAGGAGGTTCAGCTTCGGAGAATGATTCACACACCTCCTTTCAACATGTATACAATATTAATCTTGTTGATGCTGCAGAGGCGCAAGCACTTGATGTGTAAGAAGCTTCCTGCCATCACCGTCACCACAGCCCTTCTGAACTGA

Coding sequence (CDS)

ATGAGTGATGACGACACAATTAGCGAGGTTTGCATTCTATGCCCATCGCCTTCTGGGTTCCCTTTGGATCTACGCCGCCATCGCCTCCTTCCCCGCCATTTCAGACCCATTTCTTCATACCCATTTCCCCTTTTCCTCTTCAAAACCTCTGAACAATCACACCTTCAAAACCTCATCGGGGATTTCAGCTATTTTCAGGAATCGGAATCTGGGTCCATCTGGGTTCGGGTTATGAGGGACGATGAACTCGACCCCATTGTTGGGCTGCTCGCTCTCCATCTTCTGAAGCTATGCTACATGACAGTTAAAAAGGAGGTTCAGCTTCGGAGAATGATTCACACACCTCCTTTCAACATGTATACAATATTAATCTTGTTGATGCTGCAGAGGCGCAAGCACTTGATGTGTAAGAAGCTTCCTGCCATCACCGTCACCACAGCCCTTCTGAACTGA

Protein sequence

MSDDDTISEVCILCPSPSGFPLDLRRHRLLPRHFRPISSYPFPLFLFKTSEQSHLQNLIGDFSYFQESESGSIWVRVMRDDELDPIVGLLALHLLKLCYMTVKKEVQLRRMIHTPPFNMYTILILLMLQRRKHLMCKKLPAITVTTALLN
Homology
[Close]
BLAST of Cp4.1LG01g04110 vs. TrEMBL
Match: A0A0A0KQC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602760 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 51/107 (47.66%), Postives = 57/107 (53.27%), Query Frame = 1 

Query: 21  PLDLRRHRLLPRHFR----PISSYPFPLFL------------------------------ 80
           PLDL RHRLLP+H      PISSYPFPLFL                              
Sbjct: 10  PLDLHRHRLLPQHRTFPTLPISSYPFPLFLKNQSFKTSSAPLHSSPTTLDSSLLDDPLRT 69

Query: 81  --FKTSEQSHLQNLIGDFSYFQESESGSIWVRVMRDDELDPIVGLLA 92
             F T+++     L+GDF YF+E ESG IWVRVMRDDELD  VGLLA
Sbjct: 70  GRFLTNDEFEKLKLLGDFGYFKELESGFIWVRVMRDDELDATVGLLA 116

[Close]
BLAST of Cp4.1LG01g04110 vs. TAIR10
Match: AT1G24040.1 (AT1G24040.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.2e-06
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1 

Query: 51  EQSHLQNLIGDFSYFQESESGSIWVRVMRDDELDPIVGLLA 92
           E   L+ L G F+YFQE ESGS+WVRVMR +E+D  V LLA
Sbjct: 88  ELEKLKTLEG-FAYFQELESGSMWVRVMRHEEMDSTVHLLA 127

[Close]
BLAST of Cp4.1LG01g04110 vs. NCBI nr
Match: gi|449434885|ref|XP_004135226.1| (PREDICTED: uncharacterized protein LOC101210740 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 51/107 (47.66%), Postives = 57/107 (53.27%), Query Frame = 1 

Query: 21  PLDLRRHRLLPRHFR----PISSYPFPLFL------------------------------ 80
           PLDL RHRLLP+H      PISSYPFPLFL                              
Sbjct: 10  PLDLHRHRLLPQHRTFPTLPISSYPFPLFLKNQSFKTSSAPLHSSPTTLDSSLLDDPLRT 69

Query: 81  --FKTSEQSHLQNLIGDFSYFQESESGSIWVRVMRDDELDPIVGLLA 92
             F T+++     L+GDF YF+E ESG IWVRVMRDDELD  VGLLA
Sbjct: 70  GRFLTNDEFEKLKLLGDFGYFKELESGFIWVRVMRDDELDATVGLLA 116

[Close]
BLAST of Cp4.1LG01g04110 vs. NCBI nr
Match: gi|659090858|ref|XP_008446240.1| (PREDICTED: uncharacterized protein LOC103489030 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 50/106 (47.17%), Postives = 54/106 (50.94%), Query Frame = 1 

Query: 22  LDLRRHRLLPRHFR----PISSYPFPLFL------------------------------- 81
           LDL RHRLLP H      PISSYPFPLFL                               
Sbjct: 11  LDLHRHRLLPHHRTFPTLPISSYPFPLFLKNQSFKTSSAPLHSSPTTLGSSLLDDPLRTG 70

Query: 82  -FKTSEQSHLQNLIGDFSYFQESESGSIWVRVMRDDELDPIVGLLA 92
            F T+++     L+GDF YFQE ESG I VRVMRDDELD  VGLLA
Sbjct: 71  RFLTNDEFEKLKLLGDFGYFQELESGFILVRVMRDDELDATVGLLA 116

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g04110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g04110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQC0_CUCSA1.0e-1347.66Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602760 PE=4 SV=1[more]
BLAST of Cp4.1LG01g04110 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24040.19.2e-0660.98 Acyl-CoA N-acyltransferases (NAT) superfamily protein[more]
BLAST of Cp4.1LG01g04110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434885|ref|XP_004135226.1|1.5e-1347.66PREDICTED: uncharacterized protein LOC101210740 [Cucumis sativus][more]
gi|659090858|ref|XP_008446240.1|1.4e-1147.17PREDICTED: uncharacterized protein LOC103489030 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g04110.1Cp4.1LG01g04110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g04110CmoCh04G003060Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g04110CsaV3_5G031780Cucumber (Chinese Long) v3cpecucB0521
Cp4.1LG01g04110Bhi07G001365Wax gourdcpewgoB0561
Cp4.1LG01g04110Carg01768Silver-seed gourdcarcpeB1178
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g04110Cucumber (Gy14) v2cgybcpeB631
Cp4.1LG01g04110Melon (DHL92) v3.6.1cpemedB439
Cp4.1LG01g04110Cucumber (Chinese Long) v3cpecucB0550
Cp4.1LG01g04110Cucurbita pepo (Zucchini)cpecpeB375
Cp4.1LG01g04110Cucumber (Gy14) v1cgycpeB0755
Cp4.1LG01g04110Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g04110Cucurbita maxima (Rimu)cmacpeB724
Cp4.1LG01g04110Cucurbita moschata (Rifu)cmocpeB676
Cp4.1LG01g04110Wild cucumber (PI 183967)cpecpiB419
Cp4.1LG01g04110Wild cucumber (PI 183967)cpecpiB445
Cp4.1LG01g04110Cucumber (Chinese Long) v2cpecuB419
Cp4.1LG01g04110Cucumber (Chinese Long) v2cpecuB444
Cp4.1LG01g04110Bottle gourd (USVL1VR-Ls)cpelsiB363
Cp4.1LG01g04110Watermelon (Charleston Gray)cpewcgB395
Cp4.1LG01g04110Watermelon (97103) v1cpewmB379
Cp4.1LG01g04110Watermelon (97103) v1cpewmB434
Cp4.1LG01g04110Melon (DHL92) v3.5.1cpemeB380