Cp4.1LG01g00090 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g00090
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S10-like
LocationCp4.1LG01 : 3800821 .. 3802583 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTTCTCTTCTTCTTCTATCATAGCAACTAATTTATGTCTTTCTTTTTCTTTTTCTTTTTTCTTATTCTCGTTCCAAGGTTGTGTGGTGTTTCAAAATGAATTGATTTTTGAAAGGAATCAATCTGGCAGTGGGAATTGTTTCCCTGTTTGTGTATTTTGAATTGATGTAGTGGGTCGAGTTCTCTTTCGTTCGAAGAATTATTTTCCTTGTGTTCGGTCTCTCATGTTCATTTGTTTCTTTTCTTCAGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTCTTTCAAGGTATACTTTAATGCAATCCCTCTTGAACGAGGGTTATTTCTGATTTGTCGGTGATTTCGCGATTTTATTTATTCGTTGTTGTTGGCGATTCAGAGGGGGTTTGTTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCCAATTTGCAGGTTATTAAGCTAATGCAGAGCTTCAAGTCCAAGGAATATGTCCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTTAACCTTCCTTCTGAAATTGTCCCTGCTACCTTGAAGAAACAAGCCAAGCCTGCTGGCAGGCCCTTTGGCGGACCACCCGGGGATCGCCCACGGTAAGATATGTCTGTAATGCTGATCAGTTCATTAAGGTTATGGTTGATTTATCTGTGCTTTGGAACTATGGATTATGAAGTTTTTTCGTTACTGTTCTAGGTTTATAGATGGAGGTGTATGTAATATGTGATTGTATAATGCGAGGGCTATGTTATTTAGTAAGTTGTATTTACTCGTATTAGTATTCTGATTGAGTTTTGGTGATTATATGAATTAGGGGTCCACCTCGTTTCGAGGGAGGTGAGAGGAGGTTTGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGCTGGTGAATTTGGCGGTGACAAGGGAGGAGCTCCAGCAGATTACAGGCCTTCTTTTGGGGTAATCTTTGAATCATCCATTTTGCATCATCATGGTGCTATACATAATATGGTTGATGCTCTCTATATAAGAATGTTGCTATTTCCTTGTTTTGATCTGCCCTTGGGATGATTCTTGATGATAGATATAAAATGCATTCCAATCATTGTTCATGTATCTAGCTAGAATTTTTGTAAGTAAGCCCTGTCGCACCAGGGGATGGCGAAATGGTTTTGTCATTTGTTAGTAATTGGTCATGAGTTGATGGGAAGAAGCATCATATGGTTATAGTTTAGTCCCTTCATCTGTTCATGTTTTCCTTCATAAGAGCTCCCTACTCAGTTTGCTCTGCTAATAACTCAGATTATGATGTTCATTCATACTTTCTTGTGGCATTTGCATGTCATGGTCTTTGTTAATAAAATATTCTTGGGCTCATCTGAAAAAGATTAATGATTTCAGTGTGGGGTTTAGCTGAGTTGATTGGGGGCTTGTGGCTACTCTGTTTCATCAAAGAATGAGAGTTAATAGAAAAAATATTAGCTGAAATGTTAGAGATGTCATTGGATAGGTGCAGAAGTTATATTTTGAACGACTTGGCACTCTATGAGAGTCGTCTGTGAGTTCTTCGATGCTTTCGTTGATCGTTGTCTTATACTTCAAAATTTATCAGGGTCCTGGTGGAAGACCGGGTTTTGGCCGTGGAGCTGGTAGCTATGGCGGAGGAGCTGGAGCAAGCTCAAATCTTCCTTGA

mRNA sequence

ATGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTCTTTCAAGAGGGGGTTTGTTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCCAATTTGCAGGTTATTAAGCTAATGCAGAGCTTCAAGTCCAAGGAATATGTCCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTTAACCTTCCTTCTGAAATTGTCCCTGCTACCTTGAAGAAACAAGCCAAGCCTGCTGGCAGGCCCTTTGGCGGACCACCCGGGGATCGCCCACGGGGTCCACCTCGTTTCGAGGGAGGTGAGAGGAGGTTTGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGCTGGTGAATTTGGCGGTGACAAGGGAGGAGCTCCAGCAGATTACAGGCCTTCTTTTGGGGGTCCTGGTGGAAGACCGGGTTTTGGCCGTGGAGCTGGTAGCTATGGCGGAGGAGCTGGAGCAAGCTCAAATCTTCCTTGA

Coding sequence (CDS)

ATGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTCTTTCAAGAGGGGGTTTGTTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCCAATTTGCAGGTTATTAAGCTAATGCAGAGCTTCAAGTCCAAGGAATATGTCCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTTAACCTTCCTTCTGAAATTGTCCCTGCTACCTTGAAGAAACAAGCCAAGCCTGCTGGCAGGCCCTTTGGCGGACCACCCGGGGATCGCCCACGGGGTCCACCTCGTTTCGAGGGAGGTGAGAGGAGGTTTGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGCTGGTGAATTTGGCGGTGACAAGGGAGGAGCTCCAGCAGATTACAGGCCTTCTTTTGGGGGTCCTGGTGGAAGACCGGGTTTTGGCCGTGGAGCTGGTAGCTATGGCGGAGGAGCTGGAGCAAGCTCAAATCTTCCTTGA

Protein sequence

MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSNLP
Homology
[Close]
BLAST of Cp4.1LG01g00090 vs. Swiss-Prot
Match: RS10B_ORYSJ (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.8e-74
Identity = 146/181 (80.66%), Postives = 158/181 (87.29%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPPGDRPRGPPRFEGG 120
           W +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GPPGDRPRGPPRFEG 
Sbjct: 61  WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120

Query: 121 ERRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASS 180
             RFGDRDGYRGGPRG  G+FGG+KGGAPA+++PSF   GGRPGFGRG G  G GAG +S
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGG-GFGAGPTS 180

[Close]
BLAST of Cp4.1LG01g00090 vs. Swiss-Prot
Match: RS10A_ORYSJ (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.8e-74
Identity = 146/181 (80.66%), Postives = 158/181 (87.29%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPPGDRPRGPPRFEGG 120
           W +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GPPGDRPRGPPRFEG 
Sbjct: 61  WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120

Query: 121 ERRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASS 180
             RFGDRDGYRGGPRG  G+FGG+KGGAPA+++PSF   GGRPGFGRG G  G GAG +S
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGG-GFGAGPTS 180

[Close]
BLAST of Cp4.1LG01g00090 vs. Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.4e-74
Identity = 143/182 (78.57%), Postives = 155/182 (85.16%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RGPPR +G  
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120

Query: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180
            RFGDRDGYRGGPRG     G +KGGAPAD++PSF G GGRPGFGRGAG Y   A + S 
Sbjct: 121 PRFGDRDGYRGGPRG-----GDEKGGAPADFQPSFQGGGGRPGFGRGAGGYSAAAPSGSG 177

Query: 181 LP 183
            P
Sbjct: 181 FP 177

[Close]
BLAST of Cp4.1LG01g00090 vs. Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 273.5 bits (698), Expect = 1.7e-72
Identity = 146/183 (79.78%), Postives = 158/183 (86.34%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RG PR EGG+
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRG-PRHEGGD 120

Query: 121 R-RFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASS 180
           R RFGDRDGYR GPR   GEFGG+KGGAPADY+PSF G G   GFGRGAG Y   A + S
Sbjct: 121 RPRFGDRDGYRAGPRA-GGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAAAPSGS 179

Query: 181 NLP 183
            LP
Sbjct: 181 GLP 179

[Close]
BLAST of Cp4.1LG01g00090 vs. Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.3e-68
Identity = 147/185 (79.46%), Postives = 161/185 (87.03%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETF 60
           MIISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETF
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 61  AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGG 120
           AWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGPPR + G
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGD-G 120

Query: 121 ERRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSF-GGPGG-RPGFGRGAGSYGGGAGA 180
           ERRFGDRDGYRGGP+   GE+ GDK GAPADY+P F GG GG R GFGRGAG +GGGA A
Sbjct: 121 ERRFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGA-A 180

Query: 181 SSNLP 183
            S+LP
Sbjct: 181 GSDLP 180

[Close]
BLAST of Cp4.1LG01g00090 vs. TrEMBL
Match: A0A0A0KUQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G049090 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 5.8e-96
Identity = 179/182 (98.35%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180
           RRFGDRDGYRGGPRGP GEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGA  SSN
Sbjct: 121 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAPSSN 180

Query: 181 LP 183
           LP
Sbjct: 181 LP 182

[Close]
BLAST of Cp4.1LG01g00090 vs. TrEMBL
Match: A0A151TJU9_CAJCA (40S ribosomal protein S10-1 (Fragment) OS=Cajanus cajan GN=KK1_013647 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.3e-87
Identity = 164/181 (90.61%), Postives = 171/181 (94.48%), Query Frame = 1 

Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           II EKNRREI KYLFQEGVCYAKKD+NLAKHP+IDVPNLQVIKLMQSFKS+EYVRETFAW
Sbjct: 4   IIPEKNRREICKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAW 63

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121
           MHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRF+G  R
Sbjct: 64  MHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERR 123

Query: 122 RFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSNL 181
             GDRDGYRGGPRGP G+FGGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGGA  SSN+
Sbjct: 124 FGGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAPTSSNI 183

Query: 182 P 183
           P
Sbjct: 184 P 184

[Close]
BLAST of Cp4.1LG01g00090 vs. TrEMBL
Match: A0A059C1U1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00655 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 9.3e-86
Identity = 167/183 (91.26%), Postives = 171/183 (93.44%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII EKNRREISKYLFQEGVC+AKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYV ETFA
Sbjct: 1   MIIPEKNRREISKYLFQEGVCFAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVTETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPF-GGPPGDRPRGPPRFEGG 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRP  GGPPGDRPRGPPRFEGG
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPMGGGPPGDRPRGPPRFEGG 120

Query: 121 ERRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASS 180
           ERRFGDR+GYR GPRGP G+F GDKGGAPADYRPSFGGPGGRPGFGRG G +G G  ASS
Sbjct: 121 ERRFGDREGYRSGPRGPGGDF-GDKGGAPADYRPSFGGPGGRPGFGRGGGGFGAGP-ASS 180

Query: 181 NLP 183
           NLP
Sbjct: 181 NLP 181

[Close]
BLAST of Cp4.1LG01g00090 vs. TrEMBL
Match: A0A0A0KK65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152800 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.6e-85
Identity = 168/181 (92.82%), Postives = 171/181 (94.48%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII EKNR+EISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIIPEKNRKEISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP GDRPRGP RF+ GE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFD-GE 120

Query: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180
           RRFGDRDGYRGGPRGP G+F GDKGGAPADYRPSFGGPGGRPGFGRGAG Y GGA A SN
Sbjct: 121 RRFGDRDGYRGGPRGPGGDF-GDKGGAPADYRPSFGGPGGRPGFGRGAGGY-GGAPAPSN 178

Query: 181 L 182
           L
Sbjct: 181 L 178

[Close]
BLAST of Cp4.1LG01g00090 vs. TrEMBL
Match: A0A0S3T5U6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G219900 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.6e-85
Identity = 164/182 (90.11%), Postives = 170/182 (93.41%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREI KYLFQEGVCYAKKD+NLAKHP+IDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 1   MIISEKNRREICKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEG  
Sbjct: 61  WMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER 120

Query: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180
           R  GDRDGYRGGPRGP G+F GDKGGAPADYRPSFGGPGGRPGFGRGAG Y  GA  SSN
Sbjct: 121 RFGGDRDGYRGGPRGPGGDF-GDKGGAPADYRPSFGGPGGRPGFGRGAGGY--GAPTSSN 179

Query: 181 LP 183
           +P
Sbjct: 181 IP 179

[Close]
BLAST of Cp4.1LG01g00090 vs. TAIR10
Match: AT4G25740.1 (AT4G25740.1 RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 279.6 bits (714), Expect = 1.3e-75
Identity = 143/182 (78.57%), Postives = 155/182 (85.16%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RGPPR +G  
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120

Query: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180
            RFGDRDGYRGGPRG     G +KGGAPAD++PSF G GGRPGFGRGAG Y   A + S 
Sbjct: 121 PRFGDRDGYRGGPRG-----GDEKGGAPADFQPSFQGGGGRPGFGRGAGGYSAAAPSGSG 177

Query: 181 LP 183
            P
Sbjct: 181 FP 177

[Close]
BLAST of Cp4.1LG01g00090 vs. TAIR10
Match: AT5G52650.1 (AT5G52650.1 RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 273.5 bits (698), Expect = 9.6e-74
Identity = 146/183 (79.78%), Postives = 158/183 (86.34%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RG PR EGG+
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRG-PRHEGGD 120

Query: 121 R-RFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASS 180
           R RFGDRDGYR GPR   GEFGG+KGGAPADY+PSF G G   GFGRGAG Y   A + S
Sbjct: 121 RPRFGDRDGYRAGPRA-GGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAAAPSGS 179

Query: 181 NLP 183
            LP
Sbjct: 181 GLP 179

[Close]
BLAST of Cp4.1LG01g00090 vs. TAIR10
Match: AT5G41520.1 (AT5G41520.1 RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 258.8 bits (660), Expect = 2.4e-69
Identity = 147/185 (79.46%), Postives = 161/185 (87.03%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETF 60
           MIISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETF
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 61  AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGG 120
           AWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGPPR + G
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGD-G 120

Query: 121 ERRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSF-GGPGG-RPGFGRGAGSYGGGAGA 180
           ERRFGDRDGYRGGP+   GE+ GDK GAPADY+P F GG GG R GFGRGAG +GGGA A
Sbjct: 121 ERRFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGA-A 180

Query: 181 SSNLP 183
            S+LP
Sbjct: 181 GSDLP 180

[Close]
BLAST of Cp4.1LG01g00090 vs. NCBI nr
Match: gi|449457586|ref|XP_004146529.1| (PREDICTED: 40S ribosomal protein S10-1-like [Cucumis sativus])

HSP 1 Score: 358.2 bits (918), Expect = 8.4e-96
Identity = 179/182 (98.35%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180
           RRFGDRDGYRGGPRGP GEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGA  SSN
Sbjct: 121 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAPSSN 180

Query: 181 LP 183
           LP
Sbjct: 181 LP 182

[Close]
BLAST of Cp4.1LG01g00090 vs. NCBI nr
Match: gi|659102211|ref|XP_008452010.1| (PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo])

HSP 1 Score: 356.7 bits (914), Expect = 2.4e-95
Identity = 178/182 (97.80%), Postives = 178/182 (97.80%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120

Query: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180
           RRFGDRDGYRGGPRGP GEFGGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGGA  SSN
Sbjct: 121 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSN 180

Query: 181 LP 183
           LP
Sbjct: 181 LP 182

[Close]
BLAST of Cp4.1LG01g00090 vs. NCBI nr
Match: gi|828330699|ref|XP_012574477.1| (PREDICTED: myb-like protein Q [Cicer arietinum])

HSP 1 Score: 330.9 bits (847), Expect = 1.4e-87
Identity = 168/182 (92.31%), Postives = 172/182 (94.51%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREI KYLFQEGVCYAKKD+NLAKHPEIDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 344 MIISEKNRREICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 403

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEG  
Sbjct: 404 WMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER 463

Query: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180
           R  GDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGS+  GA  SSN
Sbjct: 464 RFGGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSF--GAPTSSN 523

Query: 181 LP 183
            P
Sbjct: 524 AP 523

[Close]
BLAST of Cp4.1LG01g00090 vs. NCBI nr
Match: gi|502183875|ref|XP_004517235.1| (PREDICTED: 40S ribosomal protein S10-1 [Cicer arietinum])

HSP 1 Score: 330.9 bits (847), Expect = 1.4e-87
Identity = 168/182 (92.31%), Postives = 172/182 (94.51%), Query Frame = 1 

Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREI KYLFQEGVCYAKKD+NLAKHPEIDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 1   MIISEKNRREICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGE 120
           WMHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEG  
Sbjct: 61  WMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER 120

Query: 121 RRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSN 180
           R  GDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGS+  GA  SSN
Sbjct: 121 RFGGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSF--GAPTSSN 180

Query: 181 LP 183
            P
Sbjct: 181 AP 180

[Close]
BLAST of Cp4.1LG01g00090 vs. NCBI nr
Match: gi|1012356133|gb|KYP67320.1| (40S ribosomal protein S10-1, partial [Cajanus cajan])

HSP 1 Score: 330.5 bits (846), Expect = 1.9e-87
Identity = 164/181 (90.61%), Postives = 171/181 (94.48%), Query Frame = 1 

Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           II EKNRREI KYLFQEGVCYAKKD+NLAKHP+IDVPNLQVIKLMQSFKS+EYVRETFAW
Sbjct: 4   IIPEKNRREICKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAW 63

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121
           MHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRF+G  R
Sbjct: 64  MHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERR 123

Query: 122 RFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSNL 181
             GDRDGYRGGPRGP G+FGGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGGA  SSN+
Sbjct: 124 FGGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAPTSSNI 183

Query: 182 P 183
           P
Sbjct: 184 P 184

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g00090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS10B_ORYSJ1.8e-7480.6640S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica GN=RPS10-2 PE=2 SV=1[more]
RS10A_ORYSJ1.8e-7480.6640S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica GN=RPS10-1 PE=2 SV=1[more]
RS101_ARATH2.4e-7478.5740S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1[more]
RS103_ARATH1.7e-7279.7840S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2[more]
RS102_ARATH4.3e-6879.4640S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1[more]
BLAST of Cp4.1LG01g00090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUQ3_CUCSA5.8e-9698.35Uncharacterized protein OS=Cucumis sativus GN=Csa_4G049090 PE=4 SV=1[more]
A0A151TJU9_CAJCA1.3e-8790.6140S ribosomal protein S10-1 (Fragment) OS=Cajanus cajan GN=KK1_013647 PE=4 SV=1[more]
A0A059C1U1_EUCGR9.3e-8691.26Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00655 PE=4 SV=1[more]
A0A0A0KK65_CUCSA1.6e-8592.82Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152800 PE=4 SV=1[more]
A0A0S3T5U6_PHAAN4.6e-8590.11Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G219900 PE=... [more]
BLAST of Cp4.1LG01g00090 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G25740.11.3e-7578.57 RNA binding Plectin/S10 domain-containing protein[more]
AT5G52650.19.6e-7479.78 RNA binding Plectin/S10 domain-containing protein[more]
AT5G41520.12.4e-6979.46 RNA binding Plectin/S10 domain-containing protein[more]
BLAST of Cp4.1LG01g00090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457586|ref|XP_004146529.1|8.4e-9698.35PREDICTED: 40S ribosomal protein S10-1-like [Cucumis sativus][more]
gi|659102211|ref|XP_008452010.1|2.4e-9597.80PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo][more]
gi|828330699|ref|XP_012574477.1|1.4e-8792.31PREDICTED: myb-like protein Q [Cicer arietinum][more]
gi|502183875|ref|XP_004517235.1|1.4e-8792.31PREDICTED: 40S ribosomal protein S10-1 [Cicer arietinum][more]
gi|1012356133|gb|KYP67320.1|1.9e-8790.6140S ribosomal protein S10-1, partial [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005326S10_plectin_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g00090.1Cp4.1LG01g00090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005326Plectin/S10, N-terminalPFAMPF03501S10_plectincoord: 3..94
score: 1.8
NoneNo IPR availablePANTHERPTHR1214640S RIBOSOMAL PROTEIN S10coord: 2..181
score: 1.3E
NoneNo IPR availablePANTHERPTHR12146:SF7SUBFAMILY NOT NAMEDcoord: 2..181
score: 1.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g00090Cucsa.106910Cucumber (Gy14) v1cgycpeB0239
Cp4.1LG01g00090CmaCh04G007290Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g00090CmaCh15G012500Cucurbita maxima (Rimu)cmacpeB324
Cp4.1LG01g00090CmaCh16G005840Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g00090CmoCh15G013150Cucurbita moschata (Rifu)cmocpeB287
Cp4.1LG01g00090CmoCh16G006340Cucurbita moschata (Rifu)cmocpeB313
Cp4.1LG01g00090CmoCh04G007740Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g00090Cla014644Watermelon (97103) v1cpewmB408
Cp4.1LG01g00090Csa5G152800Cucumber (Chinese Long) v2cpecuB432
Cp4.1LG01g00090Csa4G049090Cucumber (Chinese Long) v2cpecuB406
Cp4.1LG01g00090MELO3C005706Melon (DHL92) v3.5.1cpemeB362
Cp4.1LG01g00090MELO3C016343Melon (DHL92) v3.5.1cpemeB415
Cp4.1LG01g00090ClCG07G007960Watermelon (Charleston Gray)cpewcgB405
Cp4.1LG01g00090CSPI04G05890Wild cucumber (PI 183967)cpecpiB405
Cp4.1LG01g00090CSPI05G05090Wild cucumber (PI 183967)cpecpiB431
Cp4.1LG01g00090Lsi07G008990Bottle gourd (USVL1VR-Ls)cpelsiB379
Cp4.1LG01g00090MELO3C016343.2Melon (DHL92) v3.6.1cpemedB486
Cp4.1LG01g00090CsaV3_5G002500Cucumber (Chinese Long) v3cpecucB0538
Cp4.1LG01g00090CsaV3_4G006060Cucumber (Chinese Long) v3cpecucB0503
Cp4.1LG01g00090Bhi01G001792Wax gourdcpewgoB0510
Cp4.1LG01g00090CsGy4G005750Cucumber (Gy14) v2cgybcpeB508
Cp4.1LG01g00090Carg14125Silver-seed gourdcarcpeB1302
Cp4.1LG01g00090Carg22213Silver-seed gourdcarcpeB0839
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g00090Cp4.1LG13g01260Cucurbita pepo (Zucchini)cpecpeB206
Cp4.1LG01g00090Cp4.1LG14g02270Cucurbita pepo (Zucchini)cpecpeB233
The following block(s) are covering this gene:

None