Carg14125 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14125
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S10-like
Location	Cucurbita_argyrosperma_scaffold_045 : 140252 .. 142668 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATTCTTCACGCCTCTCGCTTCTACTGCTGCCGTTTCAGTTCTTTCTGAACTTCAACCATGGTATTTCTCTTCTTCTTTTATCGTAGCGACTAATTTATGTCTTTCTTTCTTTTTTTTTTTCTTTTTCTCGTCCCAAGGTTGTGTGGTGCTTCAAAATGAATTGACTTTTGAAAGGAATCAATCTGGCAGTGGGAATTGTTGCCCTGTTTGTGTATTTTGAATTGATGTAGTGGGTTGAGTTCTCTTTCCTTCGAAGAATTATTTTCCTTGTGTTCGGTCTCTCATGTTCATTTGTTTCTTTTCTTCAGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTCTTTCAAGGTACACTTTAATTCAATCCCTCTTAAACGAGGGTTATTTCTGATTTGACCATGATTTCGCGATTTTATTTATTCGTTGTTGTTGGCGCGATTCAGAGGGGGTTTGTTATGCCAAGAAGGACTACAATTTGGCCAAACACCCAGAAATCGATGTGCCCAATTTGCAGGTTATTAAGCTAATGCAGAGCTTCAAGTCCAAGGAATATGTGCGCGAGACGTTTGCTTGGATGCATTACTACTGGTACCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTTAACCTTCCTTCCGAAATTGTCCCTGCTACCTTGAAGAAACAAGCCAAGCCTGCTGGCAGGCCCTTTGGCGGACCACCCGGGGATCGCCCACGGTAAGATATGTCTGTAATGCTGATCAATTCATTAAGGTTATGGTTGATTTATTTGTGCTTTGGAACTATGGATTATGAAGTTTTTTCGTTACTGTTCTAGGTTTATAGATGGAGGTGTATGTAATATGTGATTGTATAATGCGAGGGCTATGTTATTTAGTAAGTTGTATTTACTCATATTAGTATTCTGATTGCGTTTTGGTGATTATATGAATTAGGGGTCCACCTCGTTTTGAGGGAGGTGAGAGGAGGTTTGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGCTGGTGAATTTGGTGGTGACAAGGGAGGAGCTCCAGCAGATTACAGGCCTTCTTTTGGGGTAATCTTTGAATCATCCATTTTGCATCATCATAGTGCTATACATAATATGGTTGATGCTCTCTATATAAGAATGTTGCTATTTCCTTGTTTTGATCTGCCCTTGGGATGATTCTTTATGATAGATATAAAATTCATTACAATCACTGTTCATGTATCTAGCAAGAATTTTTGTAAGTGAACCCTGCGCACCAGAGGTCAAGAGTTGATGGGAAGCATCATATTGTTATAGTTTAGTCCCTTCATCTGTTCATATTTTCCTTCATAAGTGCTCCCTACTCAGTTAGTTTGCTCTGTTAATAACTCAGATTATGATGTTAATTCATAGCTTCTTGTGGCATTTGCATGTCATGGTCTTTGTTAATAAAATATTCTTGGGCTCATCTGAAAAAGATTAATGATTTCAATGTGAGGTTTACCTGAGTTGATTAGGCATATTCAAAGAATTGGGGGCTTGTGGCTACTCTGTTTCATCAAAGAATGAGAGTTAATAGAAAAATTATTAGCTGAAATGTTAGAGATGTCAGTGGATAGGTGCAGAAGTTATATTTTGAACGACTTGGCACTCTATGAGAGTCGTTTGTGAGTTCTTCGATGGTTTCGTTGTTCGTTGTCTTATACTTAAAAATTTATCAGGGTCCTGGTGGAAGACCGGGTTTTGGCCGTGGAGCTGGTAGCTATGGCGGAGGAGCTGGAGCTGGAGCAAGCTCGAATCTTCCTTGAAAAATATGGTCTTACGAGCAGTTTAATGAATTTTCAGTGGAATGAGCTAGCAGTTTGATTAAGAGTTTGTTAGCCTTTTTTCCTTTCATTTAGCATATGGGGATCTTACAAATTTAAATTTTGTTCCTCTCTTTGAACGGTTAATTACTATTTGTTTGGTATGAGCAAGAACGTGATTTTATTGTTTTTGAAGATCGACTGCCTTAGTAATGAGGAAACAAACATCTTAAGCAAATTATTATATTTATGATTAAATTGTTTTCTGTATGTGATTTTATTCCATGTTTTGATTTGTATACAACAAATATATGATCTTCATCTTGTTTTCTAACTCCAAAATTATTATTTATATACAAATATATGCTCAAGATCGTATGTTTGAGCAAAAAGTCTAGAAAATGTTTTGATTGGACGAATGCAACTATTTTTTAAAAAATTATTAATATCGAGATTTTCAGATTTAGCAAAATGTAAATTGAAATTTAAAGGATGTAAAATTTTAAGCAAATATTTAAAAATTGGGCGAAGTATTGTTTTAATACATAAATTATGCCCAGAATATCATTCATTAAGGAAATAGTAATAAAAATTTAAGGGTAAAATAGT

mRNA sequence

CTCATTCTTCACGCCTCTCGCTTCTACTGCTGCCGTTTCAGTTCTTTCTGAACTTCAACCATGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTCTTTCAAGAGGGGGTTTGTTATGCCAAGAAGGACTACAATTTGGCCAAACACCCAGAAATCGATGTGCCCAATTTGCAGGTTATTAAGCTAATGCAGAGCTTCAAGTCCAAGGAATATGTGCGCGAGACGTTTGCTTGGATGCATTACTACTGGTACCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTTAACCTTCCTTCCGAAATTGTCCCTGCTACCTTGAAGAAACAAGCCAAGCCTGCTGGCAGGCCCTTTGGCGGACCACCCGGGGATCGCCCACGGGGTCCACCTCGTTTTGAGGGAGGTGAGAGGAGGTTTGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGCTGGTGAATTTGGTGGTGACAAGGGAGGAGCTCCAGCAGATTACAGGCCTTCTTTTGGGGGTCCTGGTGGAAGACCGGGTTTTGGCCGTGGAGCTGGTAGCTATGGCGGAGGAGCTGGAGCTGGAGCAAGCTCGAATCTTCCTTGAAAAATATGGTCTTACGAGCAGTTTAATGAATTTTCAGTGGAATGAGCTAGCAGTTTGATTAAGAGTTTGTTAGCCTTTTTTCCTTTCATTTAGCATATGGGGATCTTACAAATTTAAATTTTGTTCCTCTCTTTGAACGGTTAATTACTATTTGTTTGGTATGAGCAAGAACGTGATTTTATTGTTTTTGAAGATCGACTGCCTTAGTAATGAGGAAACAAACATCTTAAGCAAATTATTATATTTATGATTAAATTGTTTTCTGTATGTGATTTTATTCCATGTTTTGATTTGTATACAACAAATATATGATCTTCATCTTGTTTTCTAACTCCAAAATTATTATTTATATACAAATATATGCTCAAGATCGTATGTTTGAGCAAAAAGTCTAGAAAATGTTTTGATTGGACGAATGCAACTATTTTTTAAAAAATTATTAATATCGAGATTTTCAGATTTAGCAAAATGTAAATTGAAATTTAAAGGATGTAAAATTTTAAGCAAATATTTAAAAATTGGGCGAAGTATTGTTTTAATACATAAATTATGCCCAGAATATCATTCATTAAGGAAATAGTAATAAAAATTTAAGGGTAAAATAGT

Coding sequence (CDS)

ATGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTCTTTCAAGAGGGGGTTTGTTATGCCAAGAAGGACTACAATTTGGCCAAACACCCAGAAATCGATGTGCCCAATTTGCAGGTTATTAAGCTAATGCAGAGCTTCAAGTCCAAGGAATATGTGCGCGAGACGTTTGCTTGGATGCATTACTACTGGTACCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTTAACCTTCCTTCCGAAATTGTCCCTGCTACCTTGAAGAAACAAGCCAAGCCTGCTGGCAGGCCCTTTGGCGGACCACCCGGGGATCGCCCACGGGGTCCACCTCGTTTTGAGGGAGGTGAGAGGAGGTTTGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGCTGGTGAATTTGGTGGTGACAAGGGAGGAGCTCCAGCAGATTACAGGCCTTCTTTTGGGGGTCCTGGTGGAAGACCGGGTTTTGGCCGTGGAGCTGGTAGCTATGGCGGAGGAGCTGGAGCTGGAGCAAGCTCGAATCTTCCTTGA

Protein sequence

MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGAGASSNLP

Homology

[Close]

BLAST of Carg14125 vs. NCBI nr
Match: XP_004146529.1 (PREDICTED: 40S ribosomal protein S10-1-like [Cucumis sativus] >KGN53350.1 hypothetical protein Csa_4G049090 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA
Sbjct: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 95

[Close]

BLAST of Carg14125 vs. NCBI nr
Match: XP_008452010.1 (PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA
Sbjct: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 95

[Close]

BLAST of Carg14125 vs. NCBI nr
Match: XP_022942965.1 (40S ribosomal protein S10-1-like [Cucurbita moschata])

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA
Sbjct: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 95

[Close]

BLAST of Carg14125 vs. NCBI nr
Match: XP_022928970.1 (40S ribosomal protein S10-1-like [Cucurbita moschata])

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA
Sbjct: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 95

[Close]

BLAST of Carg14125 vs. NCBI nr
Match: XP_022982956.1 (40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_023521589.1 40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >XP_023528948.1 40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA
Sbjct: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 95

[Close]

BLAST of Carg14125 vs. TAIR10
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 179.1 bits (453), Expect = 2.5e-45
Identity = 83/95 (87.37%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK A
Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA 95

[Close]

BLAST of Carg14125 vs. TAIR10
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-45
Identity = 83/95 (87.37%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK A
Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA 95

[Close]

BLAST of Carg14125 vs. TAIR10
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-42
Identity = 82/95 (86.32%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETF 60
          MIISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETF
Sbjct: 1  MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 61 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQ 95
          AWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ
Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQ 95

[Close]

BLAST of Carg14125 vs. Swiss-Prot
Match: sp|Q9LTF2|RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=2 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 4.5e-44
Identity = 83/95 (87.37%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK A
Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA 95

[Close]

BLAST of Carg14125 vs. Swiss-Prot
Match: sp|Q9SW09|RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.8e-44
Identity = 83/95 (87.37%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK A
Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA 95

[Close]

BLAST of Carg14125 vs. Swiss-Prot
Match: sp|P0DKK8|RS10A_ORYSJ (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MII +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+
Sbjct: 1  MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          W +YYWYLTNDGIE LR YLNLPSEIVPATLKK A
Sbjct: 61 WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSA 95

[Close]

BLAST of Carg14125 vs. Swiss-Prot
Match: sp|P0DKK9|RS10B_ORYSJ (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MII +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+
Sbjct: 1  MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          W +YYWYLTNDGIE LR YLNLPSEIVPATLKK A
Sbjct: 61 WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSA 95

[Close]

BLAST of Carg14125 vs. Swiss-Prot
Match: sp|Q9FFS8|RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.5e-41
Identity = 82/95 (86.32%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETF 60
          MIISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETF
Sbjct: 1  MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 61 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQ 95
          AWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ
Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQ 95

[Close]

BLAST of Carg14125 vs. TrEMBL
Match: tr|A0A1S3BST3|A0A1S3BST3_CUCME (40S ribosomal protein S10-1-like OS=Cucumis melo OX=3656 GN=LOC103493145 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA
Sbjct: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 95

[Close]

BLAST of Carg14125 vs. TrEMBL
Match: tr|A0A0A0KUQ3|A0A0A0KUQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G049090 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA
Sbjct: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 95

[Close]

BLAST of Carg14125 vs. TrEMBL
Match: tr|A0A1U8IG83|A0A1U8IG83_GOSHI (40S ribosomal protein S10-like OS=Gossypium hirsutum OX=3635 GN=LOC107896471 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.2e-47
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MII EKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA
Sbjct: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 95

[Close]

BLAST of Carg14125 vs. TrEMBL
Match: tr|M5XFN5|M5XFN5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G534700 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.2e-47
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
          MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1  MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          WMHYYWYLTNDGIEFLR YLNLPSEIVPATLKKQA
Sbjct: 61 WMHYYWYLTNDGIEFLRNYLNLPSEIVPATLKKQA 95

[Close]

BLAST of Carg14125 vs. TrEMBL
Match: tr|W9QS28|W9QS28_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024224 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.2e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 2  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
          IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 5  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 64

Query: 62 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 96
          MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA
Sbjct: 65 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQA 98

The following BLAST results are available for this feature:

BLAST of Carg14125 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146529.1	1.7e-47	100.00	PREDICTED: 40S ribosomal protein S10-1-like [Cucumis sativus] >KGN53350.1 hypoth...	[more]
XP_008452010.1	1.7e-47	100.00	PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo]	[more]
XP_022942965.1	1.7e-47	100.00	40S ribosomal protein S10-1-like [Cucurbita moschata]	[more]
XP_022928970.1	1.7e-47	100.00	40S ribosomal protein S10-1-like [Cucurbita moschata]	[more]
XP_022982956.1	1.7e-47	100.00	40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_023521589.1 40S ribosoma...	[more]

BLAST of Carg14125 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52650.1	2.5e-45	87.37	RNA binding Plectin/S10 domain-containing protein	[more]
AT4G25740.1	3.2e-45	87.37	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.1	2.0e-42	86.32	RNA binding Plectin/S10 domain-containing protein	[more]

BLAST of Carg14125 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LTF2\|RS103_ARATH	4.5e-44	87.37	40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=2 SV=2	[more]
sp\|Q9SW09\|RS101_ARATH	5.8e-44	87.37	40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=2 SV=1	[more]
sp\|P0DKK8\|RS10A_ORYSJ	1.1e-42	87.37	40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 ...	[more]
sp\|P0DKK9\|RS10B_ORYSJ	1.1e-42	87.37	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 ...	[more]
sp\|Q9FFS8\|RS102_ARATH	3.5e-41	86.32	40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1	[more]

BLAST of Carg14125 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BST3\|A0A1S3BST3_CUCME	1.1e-47	100.00	40S ribosomal protein S10-1-like OS=Cucumis melo OX=3656 GN=LOC103493145 PE=4 SV...	[more]
tr\|A0A0A0KUQ3\|A0A0A0KUQ3_CUCSA	1.1e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G049090 PE=4 SV=1	[more]
tr\|A0A1U8IG83\|A0A1U8IG83_GOSHI	4.2e-47	98.95	40S ribosomal protein S10-like OS=Gossypium hirsutum OX=3635 GN=LOC107896471 PE=...	[more]
tr\|M5XFN5\|M5XFN5_PRUPE	4.2e-47	98.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G534700 PE=4 SV=1	[more]
tr\|W9QS28\|W9QS28_9ROSA	4.2e-47	100.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024224 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR037447	Rps10
IPR005326	S10_plectin_N
IPR036388	WH-like_DNA-bd_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14125-RA	Carg14125-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 1..104 e-value: 4.8E-47 score: 160.2
IPR005326	Plectin/S10, N-terminal	PFAM	PF03501	S10_plectin	coord: 3..94 e-value: 1.9E-43 score: 146.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..129
None	No IPR available	PANTHER	PTHR12146:SF7	SUBFAMILY NOT NAMED	coord: 1..175
IPR037447	40S Ribosomal protein S10	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 1..175

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14125	Cla014644	Watermelon (97103) v1	carwmB0940
Carg14125	Csa4G049090	Cucumber (Chinese Long) v2	carcuB0958
Carg14125	MELO3C016343	Melon (DHL92) v3.5.1	carmeB0924
Carg14125	ClCG07G007960	Watermelon (Charleston Gray)	carwcgB0916
Carg14125	CSPI04G05890	Wild cucumber (PI 183967)	carcpiB0981
Carg14125	Cucsa.106910	Cucumber (Gy14) v1	carcgyB1059
Carg14125	CmaCh04G007290	Cucurbita maxima (Rimu)	carcmaB1288
Carg14125	CmaCh16G005840	Cucurbita maxima (Rimu)	carcmaB1286
Carg14125	CmoCh04G007740	Cucurbita moschata (Rifu)	carcmoB1259
Carg14125	CmoCh16G006340	Cucurbita moschata (Rifu)	carcmoB1258
Carg14125	Lsi07G008990	Bottle gourd (USVL1VR-Ls)	carlsiB860
Carg14125	Cp4.1LG14g02270	Cucurbita pepo (Zucchini)	carcpeB1301
Carg14125	Cp4.1LG01g00090	Cucurbita pepo (Zucchini)	carcpeB1302
Carg14125	CsGy4G005750	Cucumber (Gy14) v2	carcgybB0931
Carg14125	MELO3C016343.2	Melon (DHL92) v3.6.1	carmedB0930
Carg14125	CsaV3_4G006060	Cucumber (Chinese Long) v3	carcucB0982
Carg14125	Cla97C07G135120	Watermelon (97103) v2	carwmbB0989
Carg14125	Bhi01G001792	Wax gourd	carwgoB1086

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg14125	Carg22213	Silver-seed gourd	carcarB535

The following block(s) are covering this gene:

None