Cp4.1LG00g02990 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g02990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Homeobox associated leucine zipper protein
Location	Cp4.1LG00 : 9854224 .. 9855799 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATTAAATGGAAAGTGGGTGGCTGTGCAGTGCGAGAATTCGACATGAATCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGAAGAAGAAGAAAGCTACATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAGTAAGCAAAATCATCTCAAAATTAATGATCTTCGAATTTCTTAATCATGTATTTTATAAATAAAATTGATTATTTTTGTTTTTTATTTTTGTTTTAATTTTACAGAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGTTTGTATTTTTATACTCTCCTATATTCATTTCTTAGCTTAACAAAATGGTTATTTATTTATTTTTATTTTTATTATCTAAGTTTCCTTTTAAAAATAATCGATCTTCGGAAGCTTAAAGTGTTTTACGAAGTTAAATAATTTGTATTAGAGGTATTGAATTGTTAATCTGGATTAAGGAAATTTGTGTTCGGGTGTAGAGATATTTAATCTCGGTTTCCAAAGTTTGTGTTCGACGTGTAAAGTTTTTAACGTCGAGGTCTGAGTTTGAAGTTCGTGTTTATATGAATATATATATTTTTTTTATTATGTTTTCAAATGTTAATGTTTAATTTTTATTTTTCACCTATTTTCTTAGAATTAATTTTCTTTAGAATTATCTTAATAGAATGTTTTTAATTATTTTTTAAAATGTCTATGGAAATATCCATAATTATAAAAATAAACATGAAACGAGGAATTTTAGCTACTTTAACCCGATCTAAGTTAGGGTTAAACACGTTTTATGTTTGTTAGAGTTTCGTGAATCAAACATCTCTTAAATTCAATTTAAATCTCAAAGCTCCTACCTTTAATATGGATCTTTAGAGACACTCATTATTTGATTATATATGTGAAAACCTAACTAAATTTTAGATATTTGGATATATTTTTATTTCTGGTGAATAATGGAAGTATTAATCTTTTAAAATAATTATGTTATACACCGAAATTAACAACTTTTAAATGTATACTAAATATATATATTTGTTGACTTAATAAGAAAGGAAAATTAATTACCTAATGTGCATGGGCCTTAATCAATGCATTTGCTGGCCTAAATGTTTGATAGTTATCATGTTAATTGAATTGTATTTGAAAAGTAATTAATATTGTAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACGGAGCAAAACCGCCGTCTCCGGCAGGAGCTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACTGCGGTCGTCTCAGCTCACGGTCGACAGCCGCCCCTCCCAATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGCATGAGTGCATCCACTATAACATATAGTAAGGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA

mRNA sequence

ATGTTGATTAAATGGAAAGTGGGTGGCTGTGCAGTGCGAGAATTCGACATGAATCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGAAGAAGAAGAAAGCTACATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACGGAGCAAAACCGCCGTCTCCGGCAGGAGCTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACTGCGGTCGTCTCAGCTCACGGTCGACAGCCGCCCCTCCCAATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGCATGAGTGCATCCACTATAACATATAGTAAGGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA

Coding sequence (CDS)

ATGTTGATTAAATGGAAAGTGGGTGGCTGTGCAGTGCGAGAATTCGACATGAATCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGAAGAAGAAGAAAGCTACATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACGGAGCAAAACCGCCGTCTCCGGCAGGAGCTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACTGCGGTCGTCTCAGCTCACGGTCGACAGCCGCCCCTCCCAATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGCATGAGTGCATCCACTATAACATATAGTAAGGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA

Protein sequence

MLIKWKVGGCAVREFDMNRLPEVGDGEEEWAEEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTITYSKGASSASTMPPEAFLSALKLRQPS

Homology

[Close]

BLAST of Cp4.1LG00g02990 vs. Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-52
Identity = 120/187 (64.17%), Postives = 143/187 (76.47%), Query Frame = 1


Query: 8   GGCAVREFDMNRLPEVGDGEEEWA-----EEEEESYINDCKPRKKLRLSKDQSRLLEESF 67
           GGC +R+ D+N+ P  G  EEE+      E+EEE  +      KKLRLSK+QSRLLEESF
Sbjct: 36  GGCNMRDLDINQ-PASGGEEEEFPMGSVEEDEEERGVGGPHRPKKLRLSKEQSRLLEESF 95

Query: 68  RLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNR 127
           RLNHTL PKQKEALA++LKL+PRQVEVWFQNRRAR+KLKQTE ECEYLKR FGSLTE+NR
Sbjct: 96  RLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENR 155

Query: 128 RLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSAST--ITYSKGASSAS 187
           RL++E+EELRAM+VAP  V+S H RQ PLP SA+TMCPRCER++A+T         SSA+
Sbjct: 156 RLQREVEELRAMRVAPPTVLSPHTRQ-PLPASALTMCPRCERITAATGPPAVRPPPSSAA 215

[Close]

BLAST of Cp4.1LG00g02990 vs. Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-52
Identity = 120/187 (64.17%), Postives = 143/187 (76.47%), Query Frame = 1


Query: 8   GGCAVREFDMNRLPEVGDGEEEWA-----EEEEESYINDCKPRKKLRLSKDQSRLLEESF 67
           GGC +R+ D+N+ P  G  EEE+      E+EEE  +      KKLRLSK+QSRLLEESF
Sbjct: 36  GGCNMRDLDINQ-PASGGEEEEFPMGSVEEDEEERGVGGPHRPKKLRLSKEQSRLLEESF 95

Query: 68  RLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNR 127
           RLNHTL PKQKEALA++LKL+PRQVEVWFQNRRAR+KLKQTE ECEYLKR FGSLTE+NR
Sbjct: 96  RLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENR 155

Query: 128 RLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSAST--ITYSKGASSAS 187
           RL++E+EELRAM+VAP  V+S H RQ PLP SA+TMCPRCER++A+T         SSA+
Sbjct: 156 RLQREVEELRAMRVAPPTVLSPHTRQ-PLPASALTMCPRCERITAATGPPAVRPPPSSAA 215

[Close]

BLAST of Cp4.1LG00g02990 vs. Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.0e-46
Identity = 107/180 (59.44%), Postives = 126/180 (70.00%), Query Frame = 1


Query: 8   GGCAVREFDMNRLPEVGDGEEEWAEEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNHT 67
           GG      DMNRLP   DG++E    ++ S      PRKKLRL+++QSRLLE+SFR NHT
Sbjct: 105 GGRDQLRLDMNRLPSSEDGDDEEFSHDDGS----APPRKKLRLTREQSRLLEDSFRQNHT 164

Query: 68  LNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQE 127
           LNPKQKE LA  L L+PRQ+EVWFQNRRARSKLKQTE ECEYLKRWFGSLTE+N RL +E
Sbjct: 165 LNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHRE 224

Query: 128 LEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERM--SASTITYSKGASSASTMPPE 186
           +EELRAMKV PT V SA         S++TMCPRCER+  +AS         +  T PP+
Sbjct: 225 VEELRAMKVGPTTVNSA---------SSLTMCPRCERVTPAASPSRAVVPVPAKKTFPPQ 271

[Close]

BLAST of Cp4.1LG00g02990 vs. Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.5e-37
Identity = 91/160 (56.88%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 12  VREFDMNRLPEVGDGEEEWA-----EEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNH 71
           +R+FD+N+ P+  + + EW         E+   +  + RKKLRL+K+QS LLEESF  NH
Sbjct: 31  MRDFDINQTPKTEE-DREWMIGATPHVNEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNH 90

Query: 72  TLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQ 131
           TL PKQK+ LA  LKL  RQVEVWFQNRRARSKLK TE ECEYLKRWFGSL EQNRRL+ 
Sbjct: 91  TLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQI 150

Query: 132 ELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMS 167
           E+EELRA+K + T              SA+TMCPRCER++
Sbjct: 151 EVEELRALKPSST--------------SALTMCPRCERVT 175

[Close]

BLAST of Cp4.1LG00g02990 vs. Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.9e-34
Identity = 80/141 (56.74%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 45  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 104
           RKKLRLSKDQ+ +LE++F+ ++TLNPKQK ALA +L LKPRQVEVWFQNRRAR+KLKQTE
Sbjct: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215

Query: 105 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAH--GRQPPLPISAITMCPRC 164
            +CE LKR   +LT++NRRL +EL+ELRA+K+A  A    H  G + P P + +TMCP C
Sbjct: 216 VDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVP-PPTTLTMCPSC 275

Query: 165 ERMSASTITYSKGASSASTMP 184
           ER++++  T    + +A   P
Sbjct: 276 ERVASAATTTRNNSGAAPARP 295

[Close]

BLAST of Cp4.1LG00g02990 vs. TrEMBL
Match: A0A0A0KPM6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576600 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.4e-65
Identity = 148/208 (71.15%), Postives = 167/208 (80.29%), Query Frame = 1


Query: 1   MLIKWKVGGCAVREFDMNRLPEVGDGEEEWA------EEEEESYIND---CKPRKKLRLS 60
           MLIK KV  C VRE DMNR+P  G+ EE+WA      E EEES IN+    +PRKKLRLS
Sbjct: 1   MLIKVKVRVCVVRELDMNRVPAEGEAEEDWARGPSVEEGEEESSINNNGGTQPRKKLRLS 60

Query: 61  KDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLK 120
           KDQSRLLEESFRLNHTLNPKQKE LAMELKLKPRQVEVWFQNRRARSKLKQTE ECEY+K
Sbjct: 61  KDQSRLLEESFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMK 120

Query: 121 RWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPI-SAITMCPRCERMSASTI 180
           R FGSLTEQNRRL+ ELEELRA+KVAP AVVS H R PPL + S IT+CPRCER+ +S  
Sbjct: 121 RCFGSLTEQNRRLQWELEELRAIKVAPPAVVSRHNRHPPLLMRSTITICPRCERIISSKN 180

Query: 181 TYS-KGASSASTMPPEAFLSALKLRQPS 198
           T + + A++A+ MP +  LSAL+LRQPS
Sbjct: 181 TVADQTATTATAMPSKVVLSALQLRQPS 208

[Close]

BLAST of Cp4.1LG00g02990 vs. TrEMBL
Match: A0A0B0MRC6_GOSAR (Homeobox-leucine zipper HOX3 OS=Gossypium arboreum GN=F383_25892 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.2e-56
Identity = 121/178 (67.98%), Postives = 143/178 (80.34%), Query Frame = 1


Query: 8   GGCAVREFDMNRLPEVGDGEEEWA----EEEEESYINDCKPRKKLRLSKDQSRLLEESFR 67
           GGC VR+ D+N++P     E+EW     E+EEES  N   PRKKLRL+K+QSRLLEESFR
Sbjct: 33  GGCTVRDLDINQVP----AEDEWITASMEDEEESCNNGAPPRKKLRLTKEQSRLLEESFR 92

Query: 68  LNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRR 127
           LNHTLNPKQKEALA++LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQNRR
Sbjct: 93  LNHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRR 152

Query: 128 LRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTITYSKGASSAST 182
           L++E+EELRAMKVAP  V+S H  + PLP S +TMCPRCER++ +T    +  S+  T
Sbjct: 153 LQREVEELRAMKVAPPTVISPHSCE-PLPASTLTMCPRCERVTTTTTAAIEKGSAKMT 205

[Close]

BLAST of Cp4.1LG00g02990 vs. TrEMBL
Match: A0A0D2MCI0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G178800 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.4e-56
Identity = 125/190 (65.79%), Postives = 150/190 (78.95%), Query Frame = 1


Query: 8   GGCAVREFDMNRLPEVGDGEEEWA----EEEEESYINDCKPRKKLRLSKDQSRLLEESFR 67
           GGC VR+ D+N++P     E+EW     E+EEES  N   PRKKLRL+K+QSRLLEESFR
Sbjct: 56  GGCTVRDLDINQVP----AEDEWITASMEDEEESCNNGAPPRKKLRLTKEQSRLLEESFR 115

Query: 68  LNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRR 127
           LNHTLNPKQK ALA++LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQNRR
Sbjct: 116 LNHTLNPKQKGALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRR 175

Query: 128 LRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERM-SASTITYSKGAS--SAS 187
           L++E+EELRAMKVAP  V+S H  + PLP S +TMCPRCER+ + +T    KG++  +A+
Sbjct: 176 LQREVEELRAMKVAPPTVISPHSCE-PLPASTLTMCPRCERVTTTTTAAIEKGSAKMTAA 235

Query: 188 TMPPEAFLSA 191
           T P    LS+
Sbjct: 236 TNPTATTLSS 240

[Close]

BLAST of Cp4.1LG00g02990 vs. TrEMBL
Match: A0A061EF99_THECC (Homeobox-leucine zipper protein HOX3 OS=Theobroma cacao GN=TCM_010868 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 8.3e-56
Identity = 123/198 (62.12%), Postives = 151/198 (76.26%), Query Frame = 1


Query: 8   GGCAVREFDMNRLPEVGDGEEEW---AEEEEESYINDCKPRKKLRLSKDQSRLLEESFRL 67
           GGC VR+ D+N++P  G  E+EW   + E+EE   N   PRKKLRL+K+QSRLLEESFR 
Sbjct: 33  GGCTVRDLDINQVPS-GGAEDEWITASMEDEEESCNGAPPRKKLRLTKEQSRLLEESFRQ 92

Query: 68  NHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRL 127
           NHTLNPKQKEALAM+LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQNRRL
Sbjct: 93  NHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRL 152

Query: 128 RQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTI-----TYSKGASSA 187
           ++E+EELRAMKV P  V+S H  + PLP S +TMCPRCER++ + +       +   ++A
Sbjct: 153 QREVEELRAMKVGPPTVISPHSCE-PLPASTLTMCPRCERVTTTALDKGPTKMTAATATA 212

Query: 188 STMPPEAFLSALKLRQPS 198
           +T+  +   SAL+ R  S
Sbjct: 213 TTLSSKVGTSALQSRPSS 228

[Close]

BLAST of Cp4.1LG00g02990 vs. TrEMBL
Match: B9SJ50_RICCO (Homeobox protein, putative OS=Ricinus communis GN=RCOM_0843040 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.4e-55
Identity = 123/180 (68.33%), Postives = 144/180 (80.00%), Query Frame = 1


Query: 9   GCAVREFDMNRLPEVGDGEEEWA----EEEEESYINDCKPRKKLRLSKDQSRLLEESFRL 68
           G  V++ D+N+LP  G  EEEW     E+EEES IN   PRKKLRLSK+QSRLLEESFR 
Sbjct: 30  GEGVKDLDINQLP-AGVAEEEWITAGIEDEEESNINGGPPRKKLRLSKEQSRLLEESFRQ 89

Query: 69  NHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRL 128
           +HTLNP+QKEALAM+LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQNRRL
Sbjct: 90  HHTLNPRQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRL 149

Query: 129 RQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTIT---YSKGASSAST 182
           ++E+EELRAMKV P  V+S H  + PLP S +TMCPRCER++ ST T   + KG +  +T
Sbjct: 150 QREVEELRAMKVGPPTVLSPHSCE-PLPASTLTMCPRCERVTTSTNTAAAFDKGPTRTAT 207

[Close]

BLAST of Cp4.1LG00g02990 vs. TAIR10
Match: AT2G01430.1 (AT2G01430.1 homeobox-leucine zipper protein 17)

HSP 1 Score: 185.7 bits (470), Expect = 2.8e-47
Identity = 107/180 (59.44%), Postives = 126/180 (70.00%), Query Frame = 1


Query: 8   GGCAVREFDMNRLPEVGDGEEEWAEEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNHT 67
           GG      DMNRLP   DG++E    ++ S      PRKKLRL+++QSRLLE+SFR NHT
Sbjct: 105 GGRDQLRLDMNRLPSSEDGDDEEFSHDDGS----APPRKKLRLTREQSRLLEDSFRQNHT 164

Query: 68  LNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQE 127
           LNPKQKE LA  L L+PRQ+EVWFQNRRARSKLKQTE ECEYLKRWFGSLTE+N RL +E
Sbjct: 165 LNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHRE 224

Query: 128 LEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERM--SASTITYSKGASSASTMPPE 186
           +EELRAMKV PT V SA         S++TMCPRCER+  +AS         +  T PP+
Sbjct: 225 VEELRAMKVGPTTVNSA---------SSLTMCPRCERVTPAASPSRAVVPVPAKKTFPPQ 271

[Close]

BLAST of Cp4.1LG00g02990 vs. TAIR10
Match: AT1G70920.1 (AT1G70920.1 homeobox-leucine zipper protein 18)

HSP 1 Score: 154.8 bits (390), Expect = 5.4e-38
Identity = 91/160 (56.88%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 12  VREFDMNRLPEVGDGEEEWA-----EEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNH 71
           +R+FD+N+ P+  + + EW         E+   +  + RKKLRL+K+QS LLEESF  NH
Sbjct: 31  MRDFDINQTPKTEE-DREWMIGATPHVNEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNH 90

Query: 72  TLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQ 131
           TL PKQK+ LA  LKL  RQVEVWFQNRRARSKLK TE ECEYLKRWFGSL EQNRRL+ 
Sbjct: 91  TLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQI 150

Query: 132 ELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMS 167
           E+EELRA+K + T              SA+TMCPRCER++
Sbjct: 151 EVEELRALKPSST--------------SALTMCPRCERVT 175

[Close]

BLAST of Cp4.1LG00g02990 vs. TAIR10
Match: AT3G60390.1 (AT3G60390.1 homeobox-leucine zipper protein 3)

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-34
Identity = 91/193 (47.15%), Postives = 130/193 (67.36%), Query Frame = 1


Query: 7   VGGCAVREFDMNRLP-EVGDGEEEWAEEEEESYINDCKPRKKLRLSKDQSRLLEESFRLN 66
           VGG  V + ++ R    +G G    +++E+ S   D   RKKLRLSK+Q+ +LEE+F+ +
Sbjct: 126 VGGGRVEDNEIERASCSLGGG----SDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEH 185

Query: 67  HTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLR 126
            TLNPKQK ALA +L L+ RQVEVWFQNRRAR+KLKQTE +CEYLKR   +LT++NRRL+
Sbjct: 186 STLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQ 245

Query: 127 QELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTITYSKG---ASSASTM 186
           +E+ ELRA+K++P      H      P + +TMCP CER++ ++ + S      +S+S M
Sbjct: 246 KEVSELRALKLSP------HLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPM 305

Query: 187 PPEAFLSALKLRQ 196
            P +  +A+ LRQ
Sbjct: 306 GPMSPWAAMPLRQ 308

[Close]

BLAST of Cp4.1LG00g02990 vs. TAIR10
Match: AT2G44910.1 (AT2G44910.1 homeobox-leucine zipper protein 4)

HSP 1 Score: 141.4 bits (355), Expect = 6.1e-34
Identity = 81/148 (54.73%), Postives = 107/148 (72.30%), Query Frame = 1


Query: 34  EEESYINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQN 93
           ++E   N    RKKLRLSKDQ+ +LEE+F+ + TLNPKQK ALA +L L+ RQVEVWFQN
Sbjct: 151 DDEDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQN 210

Query: 94  RRARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPI 153
           RRAR+KLKQTE +CEYLKR   +LTE+NRRL++E+ ELRA+K++P      H      P 
Sbjct: 211 RRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSP------HLYMHMTPP 270

Query: 154 SAITMCPRCERMSASTITYSKGASSAST 182
           + +TMCP CER+S+S  T +   S+ +T
Sbjct: 271 TTLTMCPSCERVSSSAATVTAAPSTTTT 292

[Close]

BLAST of Cp4.1LG00g02990 vs. TAIR10
Match: AT5G06710.1 (AT5G06710.1 homeobox from Arabidopsis thaliana)

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-33
Identity = 78/133 (58.65%), Postives = 98/133 (73.68%), Query Frame = 1


Query: 45  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 104
           RKKLRLSKDQS  LE+SF+ + TLNPKQK ALA +L L+PRQVEVWFQNRRAR+KLKQTE
Sbjct: 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTE 248

Query: 105 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCER 164
            +CEYLKR   SLTE+NRRL++E++ELR +K +    +        LP + +TMCP CER
Sbjct: 249 VDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ-------LPATTLTMCPSCER 308

Query: 165 MSASTITYSKGAS 178
           ++ S    S  A+
Sbjct: 309 VATSAAQPSTSAA 314

[Close]

BLAST of Cp4.1LG00g02990 vs. NCBI nr
Match: gi|700196341|gb|KGN51518.1| (hypothetical protein Csa_5G576600 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 4.8e-65
Identity = 148/208 (71.15%), Postives = 167/208 (80.29%), Query Frame = 1


Query: 1   MLIKWKVGGCAVREFDMNRLPEVGDGEEEWA------EEEEESYIND---CKPRKKLRLS 60
           MLIK KV  C VRE DMNR+P  G+ EE+WA      E EEES IN+    +PRKKLRLS
Sbjct: 1   MLIKVKVRVCVVRELDMNRVPAEGEAEEDWARGPSVEEGEEESSINNNGGTQPRKKLRLS 60

Query: 61  KDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLK 120
           KDQSRLLEESFRLNHTLNPKQKE LAMELKLKPRQVEVWFQNRRARSKLKQTE ECEY+K
Sbjct: 61  KDQSRLLEESFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMK 120

Query: 121 RWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPI-SAITMCPRCERMSASTI 180
           R FGSLTEQNRRL+ ELEELRA+KVAP AVVS H R PPL + S IT+CPRCER+ +S  
Sbjct: 121 RCFGSLTEQNRRLQWELEELRAIKVAPPAVVSRHNRHPPLLMRSTITICPRCERIISSKN 180

Query: 181 TYS-KGASSASTMPPEAFLSALKLRQPS 198
           T + + A++A+ MP +  LSAL+LRQPS
Sbjct: 181 TVADQTATTATAMPSKVVLSALQLRQPS 208

[Close]

BLAST of Cp4.1LG00g02990 vs. NCBI nr
Match: gi|778704059|ref|XP_011655468.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 1.5e-61
Identity = 141/197 (71.57%), Postives = 160/197 (81.22%), Query Frame = 1


Query: 12  VREFDMNRLPEVGDGEEEWA------EEEEESYIND---CKPRKKLRLSKDQSRLLEESF 71
           VRE DMNR+P  G+ EE+WA      E EEES IN+    +PRKKLRLSKDQSRLLEESF
Sbjct: 33  VRELDMNRVPAEGEAEEDWARGPSVEEGEEESSINNNGGTQPRKKLRLSKDQSRLLEESF 92

Query: 72  RLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNR 131
           RLNHTLNPKQKE LAMELKLKPRQVEVWFQNRRARSKLKQTE ECEY+KR FGSLTEQNR
Sbjct: 93  RLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQNR 152

Query: 132 RLRQELEELRAMKVAPTAVVSAHGRQPPLPI-SAITMCPRCERMSASTITYS-KGASSAS 191
           RL+ ELEELRA+KVAP AVVS H R PPL + S IT+CPRCER+ +S  T + + A++A+
Sbjct: 153 RLQWELEELRAIKVAPPAVVSRHNRHPPLLMRSTITICPRCERIISSKNTVADQTATTAT 212

Query: 192 TMPPEAFLSALKLRQPS 198
            MP +  LSAL+LRQPS
Sbjct: 213 AMPSKVVLSALQLRQPS 229

[Close]

BLAST of Cp4.1LG00g02990 vs. NCBI nr
Match: gi|659072906|ref|XP_008467159.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 2.5e-61
Identity = 141/199 (70.85%), Postives = 159/199 (79.90%), Query Frame = 1


Query: 12  VREFDMNRLPEVGDGEEEWA-------EEEEESYIND----CKPRKKLRLSKDQSRLLEE 71
           VRE DMNR+P  G+ E +WA       E EEES IN+     +PRKKLRLSKDQSRLLEE
Sbjct: 33  VRELDMNRVPAEGEAEADWARGQSVEEEGEEESSINNNNGGTQPRKKLRLSKDQSRLLEE 92

Query: 72  SFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQ 131
           SFRLNHTLNPKQKE LAMELKLKPRQVEVWFQNRRARSKLKQTE ECEY+KR FGSLTEQ
Sbjct: 93  SFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQ 152

Query: 132 NRRLRQELEELRAMKVAPTAVVSAHGR-QPPLPISAITMCPRCERMSASTITYSKGASSA 191
           NRRL+ ELEELRA+KVAP AVVS H R QPPL  S IT+CPRCER++++  T ++ A++ 
Sbjct: 153 NRRLQWELEELRAIKVAPPAVVSRHNRSQPPLSRSTITICPRCERITSNKNTVAENATTT 212

Query: 192 ST-MPPEAFLSALKLRQPS 198
           +T M  E  LSALKLRQPS
Sbjct: 213 ATAMQSEVVLSALKLRQPS 231

[Close]

BLAST of Cp4.1LG00g02990 vs. NCBI nr
Match: gi|728816086|gb|KHG02059.1| (Homeobox-leucine zipper HOX3 [Gossypium arboreum])

HSP 1 Score: 226.9 bits (577), Expect = 3.2e-56
Identity = 121/178 (67.98%), Postives = 143/178 (80.34%), Query Frame = 1


Query: 8   GGCAVREFDMNRLPEVGDGEEEWA----EEEEESYINDCKPRKKLRLSKDQSRLLEESFR 67
           GGC VR+ D+N++P     E+EW     E+EEES  N   PRKKLRL+K+QSRLLEESFR
Sbjct: 33  GGCTVRDLDINQVP----AEDEWITASMEDEEESCNNGAPPRKKLRLTKEQSRLLEESFR 92

Query: 68  LNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRR 127
           LNHTLNPKQKEALA++LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQNRR
Sbjct: 93  LNHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRR 152

Query: 128 LRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTITYSKGASSAST 182
           L++E+EELRAMKVAP  V+S H  + PLP S +TMCPRCER++ +T    +  S+  T
Sbjct: 153 LQREVEELRAMKVAPPTVISPHSCE-PLPASTLTMCPRCERVTTTTTAAIEKGSAKMT 205

[Close]

BLAST of Cp4.1LG00g02990 vs. NCBI nr
Match: gi|823135022|ref|XP_012467291.1| (PREDICTED: homeobox-leucine zipper protein HOX3 [Gossypium raimondii])

HSP 1 Score: 225.3 bits (573), Expect = 9.2e-56
Identity = 125/190 (65.79%), Postives = 150/190 (78.95%), Query Frame = 1


Query: 8   GGCAVREFDMNRLPEVGDGEEEWA----EEEEESYINDCKPRKKLRLSKDQSRLLEESFR 67
           GGC VR+ D+N++P     E+EW     E+EEES  N   PRKKLRL+K+QSRLLEESFR
Sbjct: 56  GGCTVRDLDINQVP----AEDEWITASMEDEEESCNNGAPPRKKLRLTKEQSRLLEESFR 115

Query: 68  LNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRR 127
           LNHTLNPKQK ALA++LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQNRR
Sbjct: 116 LNHTLNPKQKGALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRR 175

Query: 128 LRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERM-SASTITYSKGAS--SAS 187
           L++E+EELRAMKVAP  V+S H  + PLP S +TMCPRCER+ + +T    KG++  +A+
Sbjct: 176 LQREVEELRAMKVAPPTVISPHSCE-PLPASTLTMCPRCERVTTTTTAAIEKGSAKMTAA 235

Query: 188 TMPPEAFLSA 191
           T P    LS+
Sbjct: 236 TNPTATTLSS 240

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g02990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HOX3_ORYSJ	1.6e-52	64.17	Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=...	[more]
HOX3_ORYSI	1.6e-52	64.17	Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 ...	[more]
ATB17_ARATH	5.0e-46	59.44	Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 ...	[more]
ATHBX_ARATH	9.5e-37	56.88	Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV...	[more]
HOX1_ORYSJ	9.9e-34	56.74	Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=...	[more]

BLAST of Cp4.1LG00g02990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPM6_CUCSA	3.4e-65	71.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576600 PE=4 SV=1	[more]
A0A0B0MRC6_GOSAR	2.2e-56	67.98	Homeobox-leucine zipper HOX3 OS=Gossypium arboreum GN=F383_25892 PE=4 SV=1	[more]
A0A0D2MCI0_GOSRA	6.4e-56	65.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G178800 PE=4 SV=1	[more]
A0A061EF99_THECC	8.3e-56	62.12	Homeobox-leucine zipper protein HOX3 OS=Theobroma cacao GN=TCM_010868 PE=4 SV=1	[more]
B9SJ50_RICCO	5.4e-55	68.33	Homeobox protein, putative OS=Ricinus communis GN=RCOM_0843040 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g02990 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01430.1	2.8e-47	59.44	homeobox-leucine zipper protein 17	[more]
AT1G70920.1	5.4e-38	56.88	homeobox-leucine zipper protein 18	[more]
AT3G60390.1	2.8e-34	47.15	homeobox-leucine zipper protein 3	[more]
AT2G44910.1	6.1e-34	54.73	homeobox-leucine zipper protein 4	[more]
AT5G06710.1	1.8e-33	58.65	homeobox from Arabidopsis thaliana	[more]

BLAST of Cp4.1LG00g02990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196341\|gb\|KGN51518.1\|	4.8e-65	71.15	hypothetical protein Csa_5G576600 [Cucumis sativus]	[more]
gi\|778704059\|ref\|XP_011655468.1\|	1.5e-61	71.57	PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis sativus]	[more]
gi\|659072906\|ref\|XP_008467159.1\|	2.5e-61	70.85	PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis melo]	[more]
gi\|728816086\|gb\|KHG02059.1\|	3.2e-56	67.98	Homeobox-leucine zipper HOX3 [Gossypium arboreum]	[more]
gi\|823135022\|ref\|XP_012467291.1\|	9.2e-56	65.79	PREDICTED: homeobox-leucine zipper protein HOX3 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR017970	Homeobox_CS
IPR009057	Homeobox-like_sf
IPR003106	Leu_zip_homeo
IPR001356	Homeobox_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0044212	transcription regulatory region DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g02990.1	Cp4.1LG00g02990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 45..99 score: 1.2
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 43..105 score: 9.4
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 41..101 score: 16
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 101..135 score: 3.8
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 101..144 score: 5.5
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 45..99 score: 6.5
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 37..102 score: 7.7
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 76..99 scor
None	No IPR available	unknown	Coil	Coil	coord: 114..137 scor
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 16..165 score: 6.7
None	No IPR available	PANTHER	PTHR24326:SF114	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17-RELATED	coord: 16..165 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g02990	Cucsa.280560	Cucumber (Gy14) v1	cgycpeB0730
Cp4.1LG00g02990	CmaCh04G020890	Cucurbita maxima (Rimu)	cmacpeB693
Cp4.1LG00g02990	Csa5G576600	Cucumber (Chinese Long) v2	cpecuB016
Cp4.1LG00g02990	MELO3C005327	Melon (DHL92) v3.5.1	cpemeB001
Cp4.1LG00g02990	CSPI05G19800	Wild cucumber (PI 183967)	cpecpiB013
Cp4.1LG00g02990	MELO3C005327.2	Melon (DHL92) v3.6.1	cpemedB001
Cp4.1LG00g02990	CsaV3_5G028630	Cucumber (Chinese Long) v3	cpecucB0016
Cp4.1LG00g02990	Bhi12G000756	Wax gourd	cpewgoB0006
Cp4.1LG00g02990	CsGy5G019290	Cucumber (Gy14) v2	cgybcpeB579

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g02990	Cucurbita moschata (Rifu)	cmocpeB645