Cp4.1LG00g02100 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g02100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG00 : 5701610 .. 5701960 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGATGATCGGTTTCCGCACTTGTGGGATCATCTTCAACCTGAATCCAATTCATCCGCTCCTTGCTTGTAGCACTGTTAAGGGTCATTGGCCATCTCTTCTTGCTCGCCGCTATGACAAACCAAGAACAGACGAGGAGGACCACCACCGCAGCGCTGAAAAAGGCACTGATCACAGATCCAACACAGACAGAGCTCCGTCCATGGCTGAGGAGTTCAATAGGATCGCGGATGAAAAGCACCTGAAGGAGGCCCCTGGTCGGAGCTCCGACAAACAATCTGAAACCTCGCAAAAAACTGCGTCTGACCAGAATTTAGACGACGGGCCTAATTACCGCCCTTGTAGTTGA

mRNA sequence

ATGACGATGATCGGTTTCCGCACTTGTGGGATCATCTTCAACCTGAATCCAATTCATCCGCTCCTTGCTTGTAGCACTGTTAAGGGTCATTGGCCATCTCTTCTTGCTCGCCGCTATGACAAACCAAGAACAGACGAGGAGGACCACCACCGCAGCGCTGAAAAAGGCACTGATCACAGATCCAACACAGACAGAGCTCCGTCCATGGCTGAGGAGTTCAATAGGATCGCGGATGAAAAGCACCTGAAGGAGGCCCCTGGTCGGAGCTCCGACAAACAATCTGAAACCTCGCAAAAAACTGCGTCTGACCAGAATTTAGACGACGGGCCTAATTACCGCCCTTGTAGTTGA

Coding sequence (CDS)

ATGACGATGATCGGTTTCCGCACTTGTGGGATCATCTTCAACCTGAATCCAATTCATCCGCTCCTTGCTTGTAGCACTGTTAAGGGTCATTGGCCATCTCTTCTTGCTCGCCGCTATGACAAACCAAGAACAGACGAGGAGGACCACCACCGCAGCGCTGAAAAAGGCACTGATCACAGATCCAACACAGACAGAGCTCCGTCCATGGCTGAGGAGTTCAATAGGATCGCGGATGAAAAGCACCTGAAGGAGGCCCCTGGTCGGAGCTCCGACAAACAATCTGAAACCTCGCAAAAAACTGCGTCTGACCAGAATTTAGACGACGGGCCTAATTACCGCCCTTGTAGTTGA

Protein sequence

MTMIGFRTCGIIFNLNPIHPLLACSTVKGHWPSLLARRYDKPRTDEEDHHRSAEKGTDHRSNTDRAPSMAEEFNRIADEKHLKEAPGRSSDKQSETSQKTASDQNLDDGPNYRPCS
Homology
[Close]
BLAST of Cp4.1LG00g02100 vs. TrEMBL
Match: A0A0A0L2C8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073950 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.7e-06
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 1 

Query: 32  PSLLARRYDKPRTDEEDHHRSAEKGTDHRSNTDRAPSMAEEFNRIADEKHLKEAPGRSSD 91
           PSL  RRY KP  DE +H          RS  +RAPS AEEFNR+A EK  K+      D
Sbjct: 89  PSLFPRRYGKPSKDEAEHSGG------ERSKAERAPSTAEEFNRMATEKQSKDHQEEEVD 148

Query: 92  ---------KQSETSQKTASDQN--LDDGPNYRPCS 117
                    K+SE + + + D N  ++ GPNYRPCS
Sbjct: 149 AVHGRDKFAKESEAAMEKSHDPNNHINKGPNYRPCS 178

[Close]
BLAST of Cp4.1LG00g02100 vs. NCBI nr
Match: gi|700200972|gb|KGN56105.1| (hypothetical protein Csa_3G073950 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 6.7e-06
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 1 

Query: 32  PSLLARRYDKPRTDEEDHHRSAEKGTDHRSNTDRAPSMAEEFNRIADEKHLKEAPGRSSD 91
           PSL  RRY KP  DE +H          RS  +RAPS AEEFNR+A EK  K+      D
Sbjct: 89  PSLFPRRYGKPSKDEAEHSGG------ERSKAERAPSTAEEFNRMATEKQSKDHQEEEVD 148

Query: 92  ---------KQSETSQKTASDQN--LDDGPNYRPCS 117
                    K+SE + + + D N  ++ GPNYRPCS
Sbjct: 149 AVHGRDKFAKESEAAMEKSHDPNNHINKGPNYRPCS 178

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g02100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g02100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2C8_CUCSA4.7e-0642.71Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073950 PE=4 SV=1[more]
BLAST of Cp4.1LG00g02100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g02100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200972|gb|KGN56105.1|6.7e-0642.71hypothetical protein Csa_3G073950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g02100.1Cp4.1LG00g02100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG00g02100Cla005334Watermelon (97103) v1cpewmB003
Cp4.1LG00g02100Csa3G073950Cucumber (Chinese Long) v2cpecuB010
Cp4.1LG00g02100ClCG10G005210Watermelon (Charleston Gray)cpewcgB002
Cp4.1LG00g02100CSPI03G04900Wild cucumber (PI 183967)cpecpiB008
Cp4.1LG00g02100CsaV3_3G004890Cucumber (Chinese Long) v3cpecucB0012
Cp4.1LG00g02100Bhi11G000451Wax gourdcpewgoB0001
Cp4.1LG00g02100CsGy3G004960Cucumber (Gy14) v2cgybcpeB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g02100Cucurbita pepo (Zucchini)cpecpeB005
Cp4.1LG00g02100Cucurbita maxima (Rimu)cmacpeB804
Cp4.1LG00g02100Cucurbita moschata (Rifu)cmocpeB757
Cp4.1LG00g02100Wild cucumber (PI 183967)cpecpiB003
Cp4.1LG00g02100Cucumber (Chinese Long) v2cpecuB004
Cp4.1LG00g02100Bottle gourd (USVL1VR-Ls)cpelsiB015
Cp4.1LG00g02100Melon (DHL92) v3.5.1cpemeB013
Cp4.1LG00g02100Melon (DHL92) v3.6.1cpemedB014
Cp4.1LG00g02100Melon (DHL92) v3.6.1cpemedB009
Cp4.1LG00g02100Silver-seed gourdcarcpeB0681
Cp4.1LG00g02100Cucumber (Chinese Long) v3cpecucB0004