CmoCh20G008610 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G008610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-binding protein
LocationCmo_Chr20 : 4334695 .. 4336494 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGGGACCAATCACACGGCTTTTAGGTTAACCCTGATTGCACAAAAACCGCGTCAGTTCGATTTGCAGCAAACCCTAAAACTAACCCTAGTTAAATTCGGCCTTCTATATAACCAACCCATTGCTTCACCACCATCTCATTGTGCTCTTCTTTGGAGGTGTGGATTTGTGTTGGGTCCCCCTCTTTCTCTCATTTCTTCTTCTTCTACCCCGATTTAGGGTTAGGGTTTTCAGTTCCGATTTAATGGCCTCCTCATCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTAGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTTGAAGCCAAGGTCCGTTTGTCGTCGAGATCTGGATTTGTCGATCCGAAATCTGATCTGTGACTCTGTGACTCTCATCTGTTTTGTGTTACTTTACTACTACTACTACTACTCTCTTGATATGTTACTTTTATTACTCTCCTTTGATCGGTACGTTCACCTTCATCCTCTTTACAGAGACGAAGAACGATCGGTTTCTTTCTTTTTTTTCTTTTTTTTTTTTTTTGATTTTTTTGTTATTGCGAAATCGTTAATCGGTGTTGTTCTGTGGCTGATCTTGGTTTTCCTGTGATTTTTTCGTTCAGATCGTTAACGATCGTGAAACTGGAAGGTCGAGGGGATTTGGATTTGTGACGTTTGTTGAGGAGGACTCCATGAGAAGTGCTATTGAAGCGATGAATGGCCAGAATCTCGATGGGCGTAGTATTACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGTGGCGGTGGAGGTTACAACCGTGGTGGTGGTGGTGGTGGAGGTGGATACGGCGGACGTCGTGAAGGTGGTGGTGGTGGTGGATACAACCGCGGCGGCGGTGGATACGGTGGTGGTGGAGGTGGATACGGTGGAGGTGGTTATGGTGGAGGAAGAGACCGTGGGTACGGTGGTGGTGGTGATGGTGGCTCCCGTTACAACCGGGGAGGCGGAGGCGGAGGCGGTGGCGGATCTGAAGGAGGCTGGAGAAATTAGGCTAAAATTTACGAATTAGCTTTTTGTTTTTGAAGTACTGGTGTGTCGAAAAAAAATCTTAGCAGCCTCTTTCATTATCAATTTGCGACTGTTTCTGTATTTCGTTTGGGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTTCTTGTTCCTCATTATCACTATGTTACGATGAAGAAAAAATTGACAAAAAAATTTAGTATAGCTCTTCGATCTCCCCGTTGATCTTCTTCCCTGATCTCCTCTATGGCCAAGATTTATCCCAACAGGGAACTTTTCAAAAAAAAAAATCTCAGTCATTATTGATTTTCTCGTGTTCAGTTGGAAAGAGCGAAGAAATAGTTGTCTCTATTTTGATCTGATCCGATTTGACAGCTGGTCGGATTATCTTGGCGGAGTTGAGATATTTTCATTCAAGTTAAGATAATTTTCAATATTCGGTCTTTTGTATTGGGCCCACGTTGTGTTGTCTATCTTGGGCTGCGTGATAGTTGTTGGGCTTTGGGAACTTTTCACATGGGCCTATGTCGGCCTGTTTTTTTTTTTTTTTTGTACGGAAAAAGTGGTGGGATTCTATGGTGTGCATTGTGTATTAATTACGCCTATTGTTTTTCGGGTAATTCTTTGCTTAGTTTGGAAATGGGTTTTTGTCAATATTGTTCTTGTTATAATTTCCCCTGTTTTATTTTTATTATTTTTATTTTTTATTTTGAATTCCCTGACACACCTCAGTTTATG

mRNA sequence

CAGGGGACCAATCACACGGCTTTTAGGTTAACCCTGATTGCACAAAAACCGCGTCAGTTCGATTTGCAGCAAACCCTAAAACTAACCCTAGTTAAATTCGGCCTTCTATATAACCAACCCATTGCTTCACCACCATCTCATTGTGCTCTTCTTTGGAGGTGTGGATTTGTGTTGGGTCCCCCTCTTTCTCTCATTTCTTCTTCTTCTACCCCGATTTAGGGTTAGGGTTTTCAGTTCCGATTTAATGGCCTCCTCATCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTAGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTTGAAGCCAAGATCGTTAACGATCGTGAAACTGGAAGGTCGAGGGGATTTGGATTTGTGACGTTTGTTGAGGAGGACTCCATGAGAAGTGCTATTGAAGCGATGAATGGCCAGAATCTCGATGGGCGTAGTATTACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGTGGCGGTGGAGGTTACAACCGTGGTGGTGGTGGTGGTGGAGGTGGATACGGCGGACGTCGTGAAGGTGGTGGTGGTGGTGGATACAACCGCGGCGGCGGTGGATACGGTGGTGGTGGAGGTGGATACGGTGGAGGTGGTTATGGTGGAGGAAGAGACCGTGGGTACGGTGGTGGTGGTGATGGTGGCTCCCGTTACAACCGGGGAGGCGGAGGCGGAGGCGGTGGCGGATCTGAAGGAGGCTGGAGAAATTAGGCTAAAATTTACGAATTAGCTTTTTGTTTTTGAAGTACTGGTGTGTCGAAAAAAAATCTTAGCAGCCTCTTTCATTATCAATTTGCGACTGTTTCTGTATTTCGTTTGGGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTTCTTGTTCCTCATTATCACTATGTTACGATGAAGAAAAAATTGACAAAAAAATTTAGTATAGCTCTTCGATCTCCCCGTTGATCTTCTTCCCTGATCTCCTCTATGGCCAAGATTTATCCCAACAGGGAACTTTTCAAAAAAAAAAATCTCAGTCATTATTGATTTTCTCGTGTTCAGTTGGAAAGAGCGAAGAAATAGTTGTCTCTATTTTGATCTGATCCGATTTGACAGCTGGTCGGATTATCTTGGCGGAGTTGAGATATTTTCATTCAAGTTAAGATAATTTTCAATATTCGGTCTTTTGTATTGGGCCCACGTTGTGTTGTCTATCTTGGGCTGCGTGATAGTTGTTGGGCTTTGGGAACTTTTCACATGGGCCTATGTCGGCCTGTTTTTTTTTTTTTTTTGTACGGAAAAAGTGGTGGGATTCTATGGTGTGCATTGTGTATTAATTACGCCTATTGTTTTTCGGGTAATTCTTTGCTTAGTTTGGAAATGGGTTTTTGTCAATATTGTTCTTGTTATAATTTCCCCTGTTTTATTTTTATTATTTTTATTTTTTATTTTGAATTCCCTGACACACCTCAGTTTATG

Coding sequence (CDS)

ATGGCCTCCTCATCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTAGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTTGAAGCCAAGATCGTTAACGATCGTGAAACTGGAAGGTCGAGGGGATTTGGATTTGTGACGTTTGTTGAGGAGGACTCCATGAGAAGTGCTATTGAAGCGATGAATGGCCAGAATCTCGATGGGCGTAGTATTACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGTGGCGGTGGAGGTTACAACCGTGGTGGTGGTGGTGGTGGAGGTGGATACGGCGGACGTCGTGAAGGTGGTGGTGGTGGTGGATACAACCGCGGCGGCGGTGGATACGGTGGTGGTGGAGGTGGATACGGTGGAGGTGGTTATGGTGGAGGAAGAGACCGTGGGTACGGTGGTGGTGGTGATGGTGGCTCCCGTTACAACCGGGGAGGCGGAGGCGGAGGCGGTGGCGGATCTGAAGGAGGCTGGAGAAATTAG
Homology
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BLAST of CmoCh20G008610 vs. Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.9e-38
Identity = 117/159 (73.58%), Postives = 129/159 (81.13%), Query Frame = 1 

Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMR 63
           + VEYRCFVGGLAWAT++ +LE+AFS FG+I ++KI+NDRETGRSRGFGFVTF +E SMR
Sbjct: 2   AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGG---GGGYGGRREGGGGGGY-- 123
            AIE MNGQ LDGR+ITVNEAQ RG GGGGG   GGGGG   GGGYGGRREGGGGGGY  
Sbjct: 62  DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGYGG 121

Query: 124 --NRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRY 156
               GGGGYGGGGGGYGG   GG  D GYGGGG GGSR+
Sbjct: 122 RREGGGGGYGGGGGGYGGRREGG--DGGYGGGG-GGSRW 157

[Close]
BLAST of CmoCh20G008610 vs. Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-35
Identity = 118/168 (70.24%), Postives = 127/168 (75.60%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS  VEYRCFVGGLAWATD  +LE AFS FGE+V++KI+NDRETGRSRGFGFVTF +E 
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGG--GGGGYGGRREGGGGG-- 120
           SM+ AIE MNGQ+LDGRSITVNEAQ RG G GGG   GGGG  GGGGYGG   G GGG  
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGGRR 120

Query: 121 ---GYNRGGGGY---GGGGGGYGGG------GYGGGRDRGYGGGGDGG 153
              GY+ GGGGY   GGGGGGYGGG      GYGGG   GYGGGG GG
Sbjct: 121 EGGGYSGGGGGYSSRGGGGGGYGGGGRRDGGGYGGGEGGGYGGGGGGG 168

[Close]
BLAST of CmoCh20G008610 vs. Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-34
Identity = 119/177 (67.23%), Postives = 136/177 (76.84%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MA++ VEYRCFVGGLAWAT+N  LE+AF++FG+++++K++ DRETGRSRGFGFVTF  E 
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120
           SM  AIE MNG+ LDGR+ITVN+AQ RGGGGGGG   G GGGGGGYGGR     GGGY  
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGG---GYGGGGGGYGGRE----GGGYGG 120

Query: 121 GGGGYGG---GGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGG-WRN 174
           GGGGYGG   GGGGYGGGGYGGG   GY GG +GG  Y  GGG GG  G  GG WRN
Sbjct: 121 GGGGYGGRREGGGGYGGGGYGGG-GGGY-GGREGGGGYGGGGGYGGNRGDSGGNWRN 168

[Close]
BLAST of CmoCh20G008610 vs. Swiss-Prot
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-33
Identity = 120/182 (65.93%), Postives = 134/182 (73.63%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF +E 
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGG-----GGGGGY-GGRREGGG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+  GGG     GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY-----GGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEG 172
           GGG   GGGGY GGGGGY     GGG YGGGR    GGGG GG      GGG GG G  G
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRRE--GGGGYGGGE----GGGYGGSGGGG 176

[Close]
BLAST of CmoCh20G008610 vs. Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-33
Identity = 121/172 (70.35%), Postives = 131/172 (76.16%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS  VEYRCFVGGLAWATD+ ALE AFS +GE++++KI+NDRETGRSRGFGFVTF +E 
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120
           SM+ AIE MNGQ+LDGRSITVNEAQ RG GGGG    GG GGGGGY      GGGGGY  
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGG----GGRGGGGGY----RSGGGGGYGG 120

Query: 121 GGGGYGGGG--GGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGG 171
           GGGGYGGGG  GGY GGG GG   RG GGGG GG     GG GGG GGS GG
Sbjct: 121 GGGGYGGGGREGGYSGGG-GGYSSRGGGGGGYGGGGRRDGGEGGGYGGSGGG 163

[Close]
BLAST of CmoCh20G008610 vs. TrEMBL
Match: A0A0A0LLY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247040 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-45
Identity = 136/174 (78.16%), Postives = 150/174 (86.21%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVE+RCFVGGLAWATD+++LEKAFS +GEIVEAKIV+DRETGRSRGFGFVTF+EE+
Sbjct: 1   MASSSVEFRCFVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120
           +MRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGGYNRGGG     YGGRR+GGG   ++R
Sbjct: 61  AMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGG-----YGGRRDGGG---FSR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGD-GGSRYNRGGGGGGGGGSEGGWRN 174
           GGGG  GGGGG   GGYGGGRDRGYGGGG  GG R +RG    GGGGSEGGWRN
Sbjct: 121 GGGGGYGGGGG---GGYGGGRDRGYGGGGGYGGGRDSRGS---GGGGSEGGWRN 160

[Close]
BLAST of CmoCh20G008610 vs. TrEMBL
Match: Q8VX74_RICCO (Glycine-rich RNA-binding protein OS=Ricinus communis GN=grp1 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.4e-44
Identity = 130/175 (74.29%), Postives = 145/175 (82.86%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MA++ +EYRCFVGGLAWAT + ALE+AFS++GE++E+KI+NDRETGRSRGFGFVTF  E 
Sbjct: 1   MAAADIEYRCFVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREG--GGGGGY 120
           SMR AIE MNGQNLDGR+ITVNEAQ RGGGGGGG     GGGGG  GGRREG  GGGGGY
Sbjct: 61  SMRDAIEGMNGQNLDGRNITVNEAQSRGGGGGGGGGYRNGGGGGYGGGRREGGYGGGGGY 120

Query: 121 NRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 174
           +RGGGGYGG     GGGGYGGGRDRGYGGGGDGGSRY+R     GGG SEG WR+
Sbjct: 121 SRGGGGYGG-----GGGGYGGGRDRGYGGGGDGGSRYSR-----GGGASEGNWRS 165

[Close]
BLAST of CmoCh20G008610 vs. TrEMBL
Match: B9SLQ3_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_0530530 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-42
Identity = 132/178 (74.16%), Postives = 147/178 (82.58%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MA++ +EYRCFVGGLAWAT + ALE+AFS++GE++E+KI+NDRETGRSRGFGFVTF  E 
Sbjct: 1   MAAADIEYRCFVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR--GGGGGGGYNRGGGGGGGGYGGRREG--GGGG 120
           SMR AIE MNGQNLDGR+ITVNEAQ R  GGGGGGGY  GGGGG G  GGRREG  GGGG
Sbjct: 61  SMRDAIEGMNGQNLDGRNITVNEAQSRGGGGGGGGGYRNGGGGGYG--GGRREGGYGGGG 120

Query: 121 GYNRGGGGYGGGGGGYGGGGYGGGRDRGY-GGGGDGGSRYNRGGGGGGGGGSEGGWRN 174
           GY+RGGGGYGG     GGGGYGGGRDRGY GGGGDGGSRY+R     GGG SEG WR+
Sbjct: 121 GYSRGGGGYGG-----GGGGYGGGRDRGYGGGGGDGGSRYSR-----GGGASEGNWRS 166

[Close]
BLAST of CmoCh20G008610 vs. TrEMBL
Match: K7LP96_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G117300 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-42
Identity = 137/179 (76.54%), Postives = 145/179 (81.01%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASS VEYRCFVGGLAWATD+ ALE+AFS +GEIVE KI+NDRETGRSRGFGFVTF  E 
Sbjct: 1   MASSDVEYRCFVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQ 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRG--GGGGGGGYGGRREGGGGGGY 120
           SM+ AIE MNGQNLDGR+ITVNEAQ RGGGGGGG   G  GGG GGGYGG    GGGGGY
Sbjct: 61  SMKDAIEGMNGQNLDGRNITVNEAQSRGGGGGGGGGGGGYGGGRGGGYGGGGR-GGGGGY 120

Query: 121 NR--GGGGYGGGG--GGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 174
           NR  GGGGYGGGG  GG GGGGYGGGRDRGYGGGGD G  Y+RGG GG     +GGWRN
Sbjct: 121 NRSGGGGGYGGGGGYGGGGGGGYGGGRDRGYGGGGDRG--YSRGGDGG-----DGGWRN 171

[Close]
BLAST of CmoCh20G008610 vs. TrEMBL
Match: V7AR96_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G023700g PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.0e-42
Identity = 133/192 (69.27%), Postives = 147/192 (76.56%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS+ +E+RCFVGGLAWATD+ AL+KAFS +G+I+E+K++NDRETGRSRGFGFVTF  E 
Sbjct: 1   MASAEIEFRCFVGGLAWATDSEALDKAFSKYGQIIESKVINDRETGRSRGFGFVTFATEQ 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGR-------REGG 120
           +MR AIE MNGQNLDGR+ITVNEAQ RG GGGGG   GGGGGGGGYGG        R GG
Sbjct: 61  AMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGYGGGGGGGGGYGGNGGGGGYGRGGG 120

Query: 121 GG----------GGYNR--GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGG 174
           GG          GGYNR  GGGGYGGGGGGYGGGGYGGGRDRGY   GDGGSRY+RGGG 
Sbjct: 121 GGSYGGGGGRREGGYNRNGGGGGYGGGGGGYGGGGYGGGRDRGY---GDGGSRYSRGGGA 180

[Close]
BLAST of CmoCh20G008610 vs. TAIR10
Match: AT2G21660.1 (AT2G21660.1 cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 144.1 bits (362), Expect = 8.3e-35
Identity = 120/182 (65.93%), Postives = 134/182 (73.63%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF +E 
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGG-----GGGGGY-GGRREGGG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+  GGG     GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY-----GGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEG 172
           GGG   GGGGY GGGGGY     GGG YGGGR    GGGG GG      GGG GG G  G
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRRE--GGGGYGGGE----GGGYGGSGGGG 176

[Close]
BLAST of CmoCh20G008610 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-30
Identity = 112/171 (65.50%), Postives = 127/171 (74.27%), Query Frame = 1 

Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMR 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF +E +MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRG--------GGGGGGYNRGGGGG-GGGYGGRREGGG 123
            AIE MNG+ LDGR ITVNEAQ RG        GG GGGY  GGGGG  GG GG   GGG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

Query: 124 GGGYNRGGGGYGGGGGGYGGGGYGGG--RDRGYGGGGDGGSRYNRGGGGGG 164
           GGGY R  GGYG GGGG GG GYGGG  R+ G  GGGDGGS    GGGGGG
Sbjct: 122 GGGYERRSGGYGSGGGG-GGRGYGGGGRREGGGYGGGDGGS---YGGGGGG 168

[Close]
BLAST of CmoCh20G008610 vs. TAIR10
Match: AT3G23830.1 (AT3G23830.1 glycine-rich RNA-binding protein 4)

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-22
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1 

Query: 9   RCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMRSAIEA 68
           + FVGGL+W TD+ +L++AF+SFGE+ EA ++ DRETGRSRGFGFV+F  EDS  +AI+ 
Sbjct: 36  KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95

Query: 69  MNGQNLDGRSITVNEAQQRGG------GGGGGYNRGGGGGGGGY 107
           M+G+ L+GR I VN A +R        GGGGGY   GGGGGGGY
Sbjct: 96  MDGKELNGRQIRVNLATERSSAPRSSFGGGGGY---GGGGGGGY 136

[Close]
BLAST of CmoCh20G008610 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein)

HSP 1 Score: 98.2 bits (243), Expect = 5.2e-21
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1 

Query: 8   YRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMRSAIE 67
           +R +VG L W  DN  LE+ FS  G++VEA++V DRETGRSRGFGFVT  + D +  AI 
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303

Query: 68  AMNGQNLDGRSITVNEAQQR 88
           A++GQNL+GR+I VN A++R
Sbjct: 304 ALDGQNLEGRAIRVNVAEER 323

[Close]
BLAST of CmoCh20G008610 vs. TAIR10
Match: AT4G13850.1 (AT4G13850.1 glycine-rich RNA-binding protein 2)

HSP 1 Score: 97.4 bits (241), Expect = 8.9e-21
Identity = 75/137 (54.74%), Postives = 93/137 (67.88%), Query Frame = 1 

Query: 9   RCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEEDSMRSAIEA 68
           + F+GGL+W TD+ +L  AF+ FG++V+AK++ DRETGRSRGFGFV F +E +  +AI  
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95

Query: 69  MNGQNLDGRSITVNEAQQRGG-----GGGGGYNRGGGGGGGGYGGRREGGGGGGYNRGGG 128
           M+G+ L+GR I VN A  R       GGGGGY+    GGGGGYGG            GGG
Sbjct: 96  MDGKELNGRHIRVNPANDRPSAPRAYGGGGGYS----GGGGGYGG------------GGG 155

Query: 129 GYGGGGGGYGGGGYGGG 141
           GYGGGGGGYGGGG GGG
Sbjct: 156 GYGGGGGGYGGGGDGGG 156

[Close]
BLAST of CmoCh20G008610 vs. NCBI nr
Match: gi|659122023|ref|XP_008460935.1| (PREDICTED: glycine-rich RNA-binding protein 1-like [Cucumis melo])

HSP 1 Score: 208.8 bits (530), Expect = 7.8e-51
Identity = 151/177 (85.31%), Postives = 160/177 (90.40%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS FG+IVEAKIV+DRETGRSRGFGFVTF EED
Sbjct: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVSDRETGRSRGFGFVTFSEED 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGG--GGGGGGYGGRREGGGGGGY 120
           +MRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGG   GG  GGGGGGYGGRR+GGGGGG+
Sbjct: 61  AMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGG---GGYRGGGGGGYGGRRDGGGGGGF 120

Query: 121 NRGGGGYGGGGGGY-GGGGYGGGRDRGYGGGGD-GGSRYNRGGGGGGGGGSEGGWRN 174
           +RGGGGYGGGGGGY GGGGYGGGRDRGYGGGG  GG R NR   GGGGGGSEGGWRN
Sbjct: 121 SRGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGYGGGRDNR---GGGGGGSEGGWRN 171

[Close]
BLAST of CmoCh20G008610 vs. NCBI nr
Match: gi|1021549819|ref|XP_016166310.1| (PREDICTED: glycine-rich RNA-binding, abscisic acid-inducible protein-like [Arachis ipaensis])

HSP 1 Score: 192.2 bits (487), Expect = 7.6e-46
Identity = 137/192 (71.35%), Postives = 149/192 (77.60%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS+ +EYRCFVGGLAWATDN ALEKAFSS+GEIVE+K++NDRETGRSRGFGFVTF  E 
Sbjct: 1   MASAEIEYRCFVGGLAWATDNEALEKAFSSYGEIVESKVINDRETGRSRGFGFVTFATEQ 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGG---------------GGGYNRGGGGGGGG 120
           +MR AIE MNGQNLDGR+ITVNEAQ RG GG               GGGYNRGGGGGGGG
Sbjct: 61  AMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGYGSGGGGGYGGGGYNRGGGGGGGG 120

Query: 121 YGGRREGGGGGGYNRGGGGYGG----GGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGG 174
           YGGRREGGGG     GGGGYGG    GGGGYGGGGYGGGRDRGY   G+GGSRY++    
Sbjct: 121 YGGRREGGGGYNRGGGGGGYGGNGGNGGGGYGGGGYGGGRDRGY---GNGGSRYSK---- 180

[Close]
BLAST of CmoCh20G008610 vs. NCBI nr
Match: gi|700206673|gb|KGN61792.1| (hypothetical protein Csa_2G247040 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.7e-45
Identity = 136/174 (78.16%), Postives = 150/174 (86.21%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVE+RCFVGGLAWATD+++LEKAFS +GEIVEAKIV+DRETGRSRGFGFVTF+EE+
Sbjct: 1   MASSSVEFRCFVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120
           +MRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGGYNRGGG     YGGRR+GGG   ++R
Sbjct: 61  AMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGG-----YGGRRDGGG---FSR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGD-GGSRYNRGGGGGGGGGSEGGWRN 174
           GGGG  GGGGG   GGYGGGRDRGYGGGG  GG R +RG    GGGGSEGGWRN
Sbjct: 121 GGGGGYGGGGG---GGYGGGRDRGYGGGGGYGGGRDSRGS---GGGGSEGGWRN 160

[Close]
BLAST of CmoCh20G008610 vs. NCBI nr
Match: gi|778669320|ref|XP_004148845.2| (PREDICTED: LOW QUALITY PROTEIN: glycine-rich RNA-binding, abscisic acid-inducible protein-like [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 2.2e-45
Identity = 144/180 (80.00%), Postives = 156/180 (86.67%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MASSSVE+RCFVGGLAWATD+++LEKAFS +GEIVEAKIV+DRETGRSRGFGFVTF+EE+
Sbjct: 1   MASSSVEFRCFVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEE 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYN- 120
           +MRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGGYNRGGGGGGG YGG   GGGGGGY  
Sbjct: 61  AMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGG-YGGGGGGGGGGGYGG 120

Query: 121 -RGGGGYG-GGGGGY---GGGGYGGGRDRGYGGGGD-GGSRYNRGGGGGGGGGSEGGWRN 174
            R GGG+  GGGGGY   GGGGYGGGRDRGYGGGG  GG R +R   G GGGGSEGGWRN
Sbjct: 121 RRDGGGFSRGGGGGYGGGGGGGYGGGRDRGYGGGGGYGGGRDSR---GSGGGGSEGGWRN 176

[Close]
BLAST of CmoCh20G008610 vs. NCBI nr
Match: gi|1012209594|ref|XP_015932759.1| (PREDICTED: glycine-rich RNA-binding protein-like [Arachis duranensis])

HSP 1 Score: 190.7 bits (483), Expect = 2.2e-45
Identity = 138/189 (73.02%), Postives = 148/189 (78.31%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60
           MAS+ +EYRCFVGGLAWATDN ALEKAFSSFGEIVE+K++NDRETGRSRGFGFVTF  E 
Sbjct: 1   MASAEIEYRCFVGGLAWATDNEALEKAFSSFGEIVESKVINDRETGRSRGFGFVTFATEQ 60

Query: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRG--GGGGGGYNRG----------GGGGGGGYGG 120
           +MR AIE MNGQNLDGR+ITVNEAQ RG  GGGGGGY  G          GGGGGGGYGG
Sbjct: 61  AMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGYGSGGGYGGGGYSRGGGGGGGYGG 120

Query: 121 RREGGGGGGYNRGGGGYGG----GGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGG 174
           RREGGGG     GGGGYGG    GGGGYGGGGYGGGRDRGY   GDGGSRY++     GG
Sbjct: 121 RREGGGGYNRGGGGGGYGGNGGNGGGGYGGGGYGGGRDRGY---GDGGSRYSK-----GG 180

The following BLAST results are available for this feature:
BLAST of CmoCh20G008610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GRP1_DAUCA9.9e-3873.58Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1[more]
GRP2_SINAL1.2e-3570.24Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1[more]
GRP2_SORBI1.7e-3467.23Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1[more]
RBG7_ARATH1.5e-3365.93Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1[more]
GRP1_SINAL1.5e-3370.35Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1[more]
BLAST of CmoCh20G008610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLY1_CUCSA1.2e-4578.16Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247040 PE=4 SV=1[more]
Q8VX74_RICCO6.4e-4474.29Glycine-rich RNA-binding protein OS=Ricinus communis GN=grp1 PE=2 SV=1[more]
B9SLQ3_RICCO1.2e-4274.16Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_0530530 P... [more]
K7LP96_SOYBN4.6e-4276.54Uncharacterized protein OS=Glycine max GN=GLYMA_11G117300 PE=4 SV=1[more]
V7AR96_PHAVU6.0e-4269.27Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G023700g PE=4 SV=1[more]
BLAST of CmoCh20G008610 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21660.18.3e-3565.93 cold, circadian rhythm, and rna binding 2[more]
AT4G39260.12.8e-3065.50 cold, circadian rhythm, and RNA binding 1[more]
AT3G23830.16.2e-2257.69 glycine-rich RNA-binding protein 4[more]
AT4G24770.15.2e-2156.25 31-kDa RNA binding protein[more]
AT4G13850.18.9e-2154.74 glycine-rich RNA-binding protein 2[more]
BLAST of CmoCh20G008610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122023|ref|XP_008460935.1|7.8e-5185.31PREDICTED: glycine-rich RNA-binding protein 1-like [Cucumis melo][more]
gi|1021549819|ref|XP_016166310.1|7.6e-4671.35PREDICTED: glycine-rich RNA-binding, abscisic acid-inducible protein-like [Arach... [more]
gi|700206673|gb|KGN61792.1|1.7e-4578.16hypothetical protein Csa_2G247040 [Cucumis sativus][more]
gi|778669320|ref|XP_004148845.2|2.2e-4580.00PREDICTED: LOW QUALITY PROTEIN: glycine-rich RNA-binding, abscisic acid-inducibl... [more]
gi|1012209594|ref|XP_015932759.1|2.2e-4573.02PREDICTED: glycine-rich RNA-binding protein-like [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006950 response to stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G008610.1CmoCh20G008610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 11..79
score: 6.6
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 9..82
score: 7.7
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 8..86
score: 19
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 6..97
score: 7.4
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 8..117
score: 4.21
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 11..170
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G008610Cucsa.109630Cucumber (Gy14) v1cgycmoB0252
CmoCh20G008610CmaCh20G008520Cucurbita maxima (Rimu)cmacmoB551
CmoCh20G008610CmaCh02G004000Cucurbita maxima (Rimu)cmacmoB606
CmoCh20G008610Cla016558Watermelon (97103) v1cmowmB534
CmoCh20G008610Csa2G247040Cucumber (Chinese Long) v2cmocuB531
CmoCh20G008610MELO3C023291Melon (DHL92) v3.5.1cmomeB495
CmoCh20G008610ClCG11G004420Watermelon (Charleston Gray)cmowcgB476
CmoCh20G008610CSPI02G12190Wild cucumber (PI 183967)cmocpiB536
CmoCh20G008610Lsi10G003660Bottle gourd (USVL1VR-Ls)cmolsiB491
CmoCh20G008610Cp4.1LG16g02330Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G008610Cp4.1LG05g12570Cucurbita pepo (Zucchini)cmocpeB534
CmoCh20G008610MELO3C023291.2Melon (DHL92) v3.6.1cmomedB568
CmoCh20G008610CsaV3_2G014690Cucumber (Chinese Long) v3cmocucB0637
CmoCh20G008610Cla97C11G211170Watermelon (97103) v2cmowmbB544
CmoCh20G008610Bhi10G001621Wax gourdcmowgoB0679
CmoCh20G008610CsGy2G012170Cucumber (Gy14) v2cgybcmoB209
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh20G008610CmoCh02G004050Cucurbita moschata (Rifu)cmocmoB404
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G008610Cucurbita moschata (Rifu)cmocmoB382
CmoCh20G008610Melon (DHL92) v3.5.1cmomeB503
CmoCh20G008610Watermelon (Charleston Gray)cmowcgB485
CmoCh20G008610Watermelon (97103) v1cmowmB516
CmoCh20G008610Cucurbita pepo (Zucchini)cmocpeB514
CmoCh20G008610Cucurbita pepo (Zucchini)cmocpeB521
CmoCh20G008610Bottle gourd (USVL1VR-Ls)cmolsiB500
CmoCh20G008610Melon (DHL92) v3.6.1cmomedB579
CmoCh20G008610Silver-seed gourdcarcmoB0434
CmoCh20G008610Silver-seed gourdcarcmoB1203
CmoCh20G008610Watermelon (97103) v2cmowmbB550
CmoCh20G008610Wax gourdcmowgoB0677