Cp4.1LG05g12570 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g12570
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGlycine-rich RNA-binding protein
LocationCp4.1LG05 : 8798566 .. 8802856 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGGATTGGAATAACTGAGGGAAGGATAAGATTTGGGGCGCATCCAAACAAGGTGCCAATCACACCGCCTTTTAGGTTAACCCTGATTGCAAATAAACCGCTTGAGTTAAATACTGAGCAAACCCTAAAACTAACCATAGTTATCTTCTGCCCTCTATATAACCAACCCCTTGGTTCATTTCTAACTCATTGTGTTCGTCTTCAGAGGTGTGGATTTGTGTCGATCCCCCTCTTTCTCTTTTCCTTCCTTGTTTGAACCCCTTTCTAGGGTTAGGGTTTTCTGATTTCCATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGGTCCGTTTGTCATCGTCGAGATCTGGATTTGTTCCGATTCGGCTTTGACGATCCTAAATCTGATCTGTGACTCTCATCTGTTTTGTGTTACTTTACTACTACTACTACTCTCTTGATATGTTACTTTTATTACTCTCCTTTCATCGGTACGTTTACCTTCATCTTGGTTACAGAGACGAAGAACGATCGATTTTTCTTTAATTTTCATTTTTCTTCTTTTGATTTTTGTTCCAGTTTGCCTCAATTGTTGTGGTTCTGTGACTGATCTTTGTTTTCTTGTGATTATTGTTATCCAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACGTTTGTGGATGAAGAGGCCATGAGAAGCGCTATCGAAGCAATGAACGGCCAGAACCTTGATGGACGGAGTATCACCGTCAACGAGGCTCAGCAAAGAGGCGGTGGCGGCGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGTTACGGTGGACGCCGTGAAGGAGGTGGTGGTGGATACAACCGTGGAGGCGGTGGTTACGGTGGTGGTGGAGGTGGATACGGAGGTGGTGGTTACGGCGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGCGGCGGCGGTGGATCTGAAGGAGGGTGGAGAAATTAGGCGGTGGTGCATTACGATTTAGCTTTTGGTTTCGTCGAAGTATTAGTGTGATGATAAAAAGAAAAAAAAAAATCTTAGCAGCCTTTTGATTTCCCTGTACTGTGTTCCGTTTGGGTGCTCTCTTTTTTTGACCGATGACCGATGGGTTTCGTGTTCCTCATTATGTCTCTGTTACAACGAAAAAATGATATAAGAAAATGAAGTAGTGCAGCTCTTCGTTCTCAACAAATCTTTGTTTTCTGTTCATCCTTTGTCTCTGCCGAATTTCCGCCATGGCCAAGAATCTCCATTAAAGGGGTTATTCATAAAAAGTAAGATCCATTTTCATGATTTTTTCAGAGGTGTCCTGTACTGTGACCATAATTATTGCACTGGGAACGGCAAATGGGGAAGATAATTATTAGTTTTTAATATAATTTGGCTGTAGTTTTGGTCTGATCCGATTGACGACAGGTAAGCAGAAAATATCGTGTAGGAGATTCGAGATATTTTTGTGGAAAAAGATGTGAGATATTTTTGCAATGATTCGTGGTATATTTCTTTTTTAATTGGGCCATGATGATGGGTCTGCCACATCGACTTCCGTAATGGACAAGTGGGCGTGGAATCTGATCGTTGAAGGAATATTCTTTCTTTCAAATTTTGAATTTAATTTATCAAATGGCTAAACAAAGAAGGGGTGGGGTGGACATCGAATAGAGTGTGTCAGCAAAGACGTTGGGCCTTGAAGGGGTTGGACTGGGTGGTGTGCTAGAGGATGCTGAAACCCAAAAAGTGATGGGTGGTGTGCTAGAGGATGCTGGAACCCAAAAAGGGATGGGTGGTGTGCTAGCAAGGGTGGTGTGCTAGAGGATGCTGTAACCCAAAAAGGGATGGGTGGTGTGCTAGAGGATGCTGGAACCCAAAAAGGGATGGATTGTAAGATCCCATGTCGATTGAAGAGAGAAATGAGTACCACAAGGGGTAGATGGGATGGTGTGCCAACGAGGATACTGGAACCTGAAAAGAGATGGATTGGTAATGGATTGTGAGATCCTACATGAACGAGTACCAGCAATGACGCTTGGCCTCAAGAGGAGATTATAAAATTCCACACCGGTTGGGTTTTAGGGTCAAAAAGAAAAAAAAAAAAAAAAAAAAAGGGAAAAAAGAGGAAAGACATATGGGGTCCAATTCCCGACGTATTGTTGTCGTTTTTCGCTGTAGCCGAATATTGTGGCCATGCCCTTCCACACCTTCTCACATGCCCTTCTCCTTCTCTCTCTCTCTCTCTCCCTTTTCCCAATAACAATATTTCCACTAAATACTATTATTAATCCTATTTATCTTTATTATTTCACAACAACTTCCTAATTTTAGCTACCACCCATTAATTCAATTACCAATATCAACTTCATCTCTACTTTCTATCATCATCTTGTTATCAGCAACACAACCGTCATACTTCTACATCTGAAACCTTATTGGGACTCGGGCAAAACAAGCTTATAATACTTGCTTAAGGATTACTCGGTGATTACGACACCTATTATGTCCTACCGAGCCATTATAATACTTATTAGATCCTATTTGTTAGATGGTATGATATTGTCTCCTTTGAGCATAAGCTCTCATGGTTTTGTTTTGGGCTTCCCCAAAAAGTCTCACCTCAATGGAGAGAGTATTCTTTGATTATAAACCCATGATCATTCCCTAAATTAGCCGATGTGGGACTTTCATCATCCAACACTATCCATCTTTTTAGTTATTTATCGAATGCTATGGGCCATTACAACACTTGTTGGGCTCTATCAAGCAAGTATTGTTCCAACCGAGAACTATTGAGTCATATTGATGGTTTATGTCGCCTTGAGCATCAACAATGACATCTGACTTGACTTTACTAATCGAAACAAACAAATGAGATTGTCTTTCCATTTAAGATTTTCCATCCATCCGTGGAGAGCTTGTATGATCTTTTAACTCACCTGAAATGTGACATACTGTCATATTTCTCACTAACCAAAATCTACCCCAAAACCTGCCTTAGACTTTCGATGCATCCACTACAAAGCCTTGACTTGAGGCCCCATCTAACCCCTACTAAGCTTTGTCATTAACAGCACTAATGATCTTGTCATATATGACCTTGCTTGAACCTTAGTTTGACTTTCTCACACAATCCTTTTGTGTTAAGTGATGTACTGTCCTTTTTGGTCGCATCACAACACTTCTCTCTCAACTCTTGACAAGACCTGATAAACCATGGCAGATCCGTTCATAACTTCGTCCGTTCATTCATAGGGACGAAGAAAAGAGAGGCTTGTAGATCACACCACAACGAGTTGCTATGTGTGAGTTTTATTGAATGTCAATCCAAGCAAAGTAAGACCACAAATAGAACTTAATAACTTCAGAAGCATAAAATGAACTTCACGTAGAATACTAAACGTTAATCAGATGAGAAAATTGTAGATACTTCACTAATATAGGCCCAACCAATAACTCTGCAGCTGTAAATAATAAAGGAATGAATAAAATGTCTTGAAATNGTGGTGGTGGTTACGGTGGACGCCGTGAAGGAGGTGGTGGTGGATACAACCGTGGAGGCGGTGGTTACGGTGGTGGTGGAGGTGGATACGGAGGTGGTGGTTACGGCGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGCGGCGGCGGTGGATCTGAAGGAGGGTGGAGAAATTAGGCGGTGGTGCATTACGATTTAGCTTTTGGTTTCGTCGAAGTATTAGTGTGATGATAAAAAGAAAAAAAAAAATCTTAGCAGCCTTTTGATTTCCCTGTACTGTGTTCCGTTTGGGTGCTCTCTTTTTTTGACCGATGACCGATGGGTTTCGTGTTCCTCATTATGTCTCTGTTACAACGAAAAAATGATATAAGAAAATGAAGTAGTGCAGCTCTTCGTTCTCAACAAATCTTTGTTTTCTGTTCATCCTTTGTCTCTGCCGAATTTCCGCCATGGCCAAGAATCTCCATTAAAGGGGTTATTCATAAAAAGTAAGATCCATTTTCATGATTTTTTCAGAGGTGTCCTGTACTGTGACCATAATTATTGCACTGGGAACGGCAAATGGGGAAGATAATTATTAGTTTTTAATATAATTTGGCTGTAGTTTTGGTCTGATCCGATTGACGACA

mRNA sequence

TGGGGATTGGAATAACTGAGGGAAGGATAAGATTTGGGGCGCATCCAAACAAGGTGCCAATCACACCGCCTTTTAGGTTAACCCTGATTGCAAATAAACCGCTTGAGTTAAATACTGAGCAAACCCTAAAACTAACCATAGTTATCTTCTGCCCTCTATATAACCAACCCCTTGGTTCATTTCTAACTCATTGTGTTCGTCTTCAGAGGTGTGGATTTGTGTCGATCCCCCTCTTTCTCTTTTCCTTCCTTGTTTGAACCCCTTTCTAGGGTTAGGGTTTTCTGATTTCCATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACTTTTGGTCTGATCCGATTGACGACAGGTGGATACGGAGGTGGTGGTTACGGCGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGCGGCGGCGGTGGATCTGAAGGAGGTTTTGGTCTGATCCGATTGACGACA

Coding sequence (CDS)

ATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACTTTTGGTCTGATCCGATTGACGACAGGTGGATACGGAGGTGGTGGTTACGGCGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGCGGCGGCGGTGGATCTGAAGGAGGTTTTGGTCTGATCCGATTGACGACA

Protein sequence

MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIRLTTGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGSEGGFGLIRLTT
Homology
[Close]
BLAST of Cp4.1LG05g12570 vs. Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.1e-21
Identity = 72/139 (51.80%), Postives = 85/139 (61.15%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MA++ VEYRCFVGGLAWAT N +LE AF+S+GEI+++K++ DRETGRSRGFGFVTF    
Sbjct: 1   MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60

Query: 61  ---------------------GLIRLTTGGYGGGGYGGG----------RDRGYGGGGGD 105
                                   +   GG GGGGYGGG          RD GYGGGGG 
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGRGGGGYGGGRRDGGYGGGGGY 120

[Close]
BLAST of Cp4.1LG05g12570 vs. Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-19
Identity = 68/137 (49.64%), Postives = 83/137 (60.58%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MA++ VEYRCFVGGLAWAT+N  LE+AF++FG+++++K++ DRETGRSRGFGFVTF    
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 61  ---------------------GLIRLTTGGYGGGGYGGG-------RDRGYGGGGGD-GG 105
                                   +   GG GGGGYGGG          GYGGGGG  GG
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGREGGGYGGGGGGYGG 120

[Close]
BLAST of Cp4.1LG05g12570 vs. Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-18
Identity = 69/138 (50.00%), Postives = 80/138 (57.97%), Query Frame = 1 

Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF------- 63
           + VEYRCFVGGLAWAT++ +LE+AFS FG+I ++KI+NDRETGRSRGFGFVTF       
Sbjct: 2   AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61

Query: 64  ------------------------------GLIRLTTGGYGGGGYGGGRDRGYGGGGGDG 105
                                         G      GGYGGGG  GGR  G GGGGG G
Sbjct: 62  DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREG-GGGGGYG 121

[Close]
BLAST of Cp4.1LG05g12570 vs. Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.2e-18
Identity = 69/130 (53.08%), Postives = 78/130 (60.00%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MAS  VEYRCFVGGLAWATD+ ALE AFS +GE++++KI+NDRETGRSRGFGFVTF    
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  -----------------------GLIRLTTGGYGGGGYGGGRDRGYGGGGGDGGRYQRGG 104
                                     R + GG GG G GGG   G GGG G GG    GG
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGG----GG 120

[Close]
BLAST of Cp4.1LG05g12570 vs. Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-17
Identity = 66/116 (56.90%), Postives = 74/116 (63.79%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---G 60
           MAS  VEYRCFVGGLAWATD  +LE AFS FGE+V++KI+NDRETGRSRGFGFVTF    
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  LIRLTTGGYGGGGYGG---------GRDRGYGGGGGDGGRYQRGGGGGGGSEGGFG 105
            ++    G  G    G          R  G GGGG  GG   RGGGG GG  GG+G
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYG 116

[Close]
BLAST of Cp4.1LG05g12570 vs. TrEMBL
Match: A0A151U7A9_CAJCA (Glycine-rich RNA-binding protein GRP1A OS=Cajanus cajan GN=KK1_007886 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 76/133 (57.14%), Postives = 85/133 (63.91%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIR 60
           M+S+ +EYRCFVGGLAWATDN ALEKAFS +GEIVE+K++NDRETGRSRGFGFVTF   +
Sbjct: 1   MSSAEIEYRCFVGGLAWATDNDALEKAFSQYGEIVESKVINDRETGRSRGFGFVTFATEQ 60

Query: 61  LTT-----------------------------GGY--GGGGYGGGRDRGYGGGGGDGGRY 103
                                           GGY  GGGGYGGGRDRGYG G   G RY
Sbjct: 61  AMRDAIEGMNGQNLDGRNITVNEAQSRYGGGGGGYGGGGGGYGGGRDRGYGDG---GSRY 120

[Close]
BLAST of Cp4.1LG05g12570 vs. TrEMBL
Match: K7LP96_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G117300 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 80/135 (59.26%), Postives = 87/135 (64.44%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIR 60
           MASS VEYRCFVGGLAWATD+ ALE+AFS +GEIVE KI+NDRETGRSRGFGFVTF   +
Sbjct: 1   MASSDVEYRCFVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQ 60

Query: 61  ------------------LTT-----------GGYGGGGYGGGRDRGYGGGG-GDGGRYQ 105
                             +T            GG GGGGYGGGR  GYGGGG G GG Y 
Sbjct: 61  SMKDAIEGMNGQNLDGRNITVNEAQSRGGGGGGGGGGGGYGGGRGGGYGGGGRGGGGGYN 120

[Close]
BLAST of Cp4.1LG05g12570 vs. TrEMBL
Match: A0A0L9UHU1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g253600 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.3e-21
Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIR 60
           MAS+ VE+RCFVGGLAWATDN ALEKAFS +G+I+E+K++NDRETGRSRGFGFVTF   +
Sbjct: 1   MASAEVEFRCFVGGLAWATDNDALEKAFSPYGQILESKVINDRETGRSRGFGFVTFATEQ 60

Query: 61  LT--------------------------TGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGG 103
                                        GG GG GYG G   GYGGGGG GG Y RGGG
Sbjct: 61  AMRDAIDGMNGQNLDGRNITVNAAQSRGRGGGGGAGYGSGGGGGYGGGGGGGG-YGRGGG 120

[Close]
BLAST of Cp4.1LG05g12570 vs. TrEMBL
Match: A0A0S3RAK8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G006500 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.3e-21
Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIR 60
           MAS+ VE+RCFVGGLAWATDN ALEKAFS +G+I+E+K++NDRETGRSRGFGFVTF   +
Sbjct: 1   MASAEVEFRCFVGGLAWATDNDALEKAFSPYGQILESKVINDRETGRSRGFGFVTFATEQ 60

Query: 61  LT--------------------------TGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGG 103
                                        GG GG GYG G   GYGGGGG GG Y RGGG
Sbjct: 61  AMRDAIDGMNGQNLDGRNITVNAAQSRGRGGGGGAGYGSGGGGGYGGGGGGGG-YGRGGG 120

[Close]
BLAST of Cp4.1LG05g12570 vs. TrEMBL
Match: E5L932_9ROSA (Putative glycine-rich RNA-binding protein 1 OS=Malus hupehensis GN=GR-RBP1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-20
Identity = 72/130 (55.38%), Postives = 84/130 (64.62%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFG--- 60
           MAS+ +E+RCFVGGLAWATDN ALE+AFS +GEI+E+KI+NDRETGRSRGFGFVTFG   
Sbjct: 1   MASAEIEFRCFVGGLAWATDNEALERAFSQYGEIIESKIINDRETGRSRGFGFVTFGSEQ 60

Query: 61  --------------------LIRLTTGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGG- 105
                               +    + G GGGG GGG  RG GGGG  GG  + GGGGG 
Sbjct: 61  AMRDAIEGMNGQNLDGRNITVNEAQSRGSGGGGGGGGYSRGGGGGGYGGGGRREGGGGGY 120

[Close]
BLAST of Cp4.1LG05g12570 vs. TAIR10
Match: AT2G21660.1 (AT2G21660.1 cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 88.2 bits (217), Expect = 3.4e-18
Identity = 69/136 (50.74%), Postives = 81/136 (59.56%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIR 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF   +
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  L------------------------TTGGYGGGGYGGGRDRGY---GGGG--GDGGRYQR 105
                                    + G  GGGG+ GG   GY   GGGG  G GG Y  
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

[Close]
BLAST of Cp4.1LG05g12570 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 80.5 bits (197), Expect = 7.2e-16
Identity = 60/124 (48.39%), Postives = 73/124 (58.87%), Query Frame = 1 

Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF------- 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF       
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  ------------GLIRLTTGGYGGGGYGGGRDRGYGGGG---GDGGRYQRGGGGG--GGS 104
                       G +         G  GGG  RG  GGG   G GG Y  GGGGG  GG 
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

[Close]
BLAST of Cp4.1LG05g12570 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-12
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 

Query: 8   YRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVT 56
           +R +VG L W  DN  LE+ FS  G++VEA++V DRETGRSRGFGFVT
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291

[Close]
BLAST of Cp4.1LG05g12570 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-12
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 

Query: 2  ASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF 57
          +S+S   + F+GGL+W+ D  +L+ AFSSFGE+ E +I  D+ +GRSRGFGFV F
Sbjct: 35 SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89

[Close]
BLAST of Cp4.1LG05g12570 vs. TAIR10
Match: AT3G07810.2 (AT3G07810.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-11
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 9  RCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF 57
          + F+GG++W T+   L++ FSSFGE++EA I+ DR TGR+RGFGFV F
Sbjct: 7  KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54

[Close]
BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match: gi|1021549819|ref|XP_016166310.1| (PREDICTED: glycine-rich RNA-binding, abscisic acid-inducible protein-like [Arachis ipaensis])

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-22
Identity = 74/128 (57.81%), Postives = 81/128 (63.28%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIR 60
           MAS+ +EYRCFVGGLAWATDN ALEKAFSS+GEIVE+K++NDRETGRSRGFGFVTF   +
Sbjct: 1   MASAEIEYRCFVGGLAWATDNEALEKAFSSYGEIVESKVINDRETGRSRGFGFVTFATEQ 60

Query: 61  LT--------------------------TGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGG 103
                                        GG GGGGYG G   GYGGGG     Y RGGG
Sbjct: 61  AMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGYGSGGGGGYGGGG-----YNRGGG 120

[Close]
BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match: gi|1012363999|gb|KYP75182.1| (Glycine-rich RNA-binding protein GRP1A [Cajanus cajan])

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-22
Identity = 76/133 (57.14%), Postives = 85/133 (63.91%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIR 60
           M+S+ +EYRCFVGGLAWATDN ALEKAFS +GEIVE+K++NDRETGRSRGFGFVTF   +
Sbjct: 1   MSSAEIEYRCFVGGLAWATDNDALEKAFSQYGEIVESKVINDRETGRSRGFGFVTFATEQ 60

Query: 61  LTT-----------------------------GGY--GGGGYGGGRDRGYGGGGGDGGRY 103
                                           GGY  GGGGYGGGRDRGYG G   G RY
Sbjct: 61  AMRDAIEGMNGQNLDGRNITVNEAQSRYGGGGGGYGGGGGGYGGGRDRGYGDG---GSRY 120

[Close]
BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match: gi|571488294|ref|XP_006590896.1| (PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Glycine max])

HSP 1 Score: 112.5 bits (280), Expect = 4.8e-22
Identity = 80/135 (59.26%), Postives = 87/135 (64.44%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIR 60
           MASS VEYRCFVGGLAWATD+ ALE+AFS +GEIVE KI+NDRETGRSRGFGFVTF   +
Sbjct: 1   MASSDVEYRCFVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQ 60

Query: 61  ------------------LTT-----------GGYGGGGYGGGRDRGYGGGG-GDGGRYQ 105
                             +T            GG GGGGYGGGR  GYGGGG G GG Y 
Sbjct: 61  SMKDAIEGMNGQNLDGRNITVNEAQSRGGGGGGGGGGGGYGGGRGGGYGGGGRGGGGGYN 120

[Close]
BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match: gi|659122023|ref|XP_008460935.1| (PREDICTED: glycine-rich RNA-binding protein 1-like [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 4.1e-21
Identity = 81/132 (61.36%), Postives = 88/132 (66.67%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTF---- 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS FG+IVEAKIV+DRETGRSRGFGFVTF    
Sbjct: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVSDRETGRSRGFGFVTFSEED 60

Query: 61  ----------GLI----RLTT--------GGYGGGGYGGGRDRGYGG--GGGDGGRYQRG 105
                     G I     +T         GG GGGGY GG   GYGG   GG GG + RG
Sbjct: 61  AMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGGGYRGGGGGGYGGRRDGGGGGGFSRG 120

[Close]
BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match: gi|694430659|ref|XP_009342794.1| (PREDICTED: glycine-rich RNA-binding protein [Pyrus x bretschneideri])

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-21
Identity = 76/132 (57.58%), Postives = 85/132 (64.39%), Query Frame = 1 

Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFG--- 60
           MAS+ +EYRCFVGGLAWATDN ALE+AFS +GEI+E+KI+NDRETGRSRGFGFVTFG   
Sbjct: 1   MASAEIEYRCFVGGLAWATDNEALERAFSQYGEIIESKIINDRETGRSRGFGFVTFGNEQ 60

Query: 61  ------------------------LIRLTTGGYGGGGYG-GGRDRGYGGGGGDGGRYQRG 105
                                     R + GG GGGGY  GG   GYGGGGG GG  +R 
Sbjct: 61  AMRDAIEAMNGQNLDGRNITVNEAQSRGSGGGAGGGGYSRGGGGGGYGGGGGYGGGGRRE 120

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g12570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GRPA_MAIZE9.1e-2151.80Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 P... [more]
GRP2_SORBI6.5e-1949.64Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1[more]
GRP1_DAUCA5.5e-1850.00Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1[more]
GRP1_SINAL7.2e-1853.08Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1[more]
GRP2_SINAL2.1e-1756.90Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1[more]
BLAST of Cp4.1LG05g12570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151U7A9_CAJCA1.2e-2257.14Glycine-rich RNA-binding protein GRP1A OS=Cajanus cajan GN=KK1_007886 PE=4 SV=1[more]
K7LP96_SOYBN3.4e-2259.26Uncharacterized protein OS=Glycine max GN=GLYMA_11G117300 PE=4 SV=1[more]
A0A0L9UHU1_PHAAN8.3e-2157.03Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g253600 PE=4 SV=1[more]
A0A0S3RAK8_PHAAN8.3e-2157.03Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G006500 PE=... [more]
E5L932_9ROSA4.1e-2055.38Putative glycine-rich RNA-binding protein 1 OS=Malus hupehensis GN=GR-RBP1 PE=2 ... [more]
BLAST of Cp4.1LG05g12570 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21660.13.4e-1850.74 cold, circadian rhythm, and rna binding 2[more]
AT4G39260.17.2e-1648.39 cold, circadian rhythm, and RNA binding 1[more]
AT4G24770.16.3e-1262.50 31-kDa RNA binding protein[more]
AT3G08000.16.3e-1252.73 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G07810.22.4e-1156.25 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG05g12570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1021549819|ref|XP_016166310.1|1.3e-2257.81PREDICTED: glycine-rich RNA-binding, abscisic acid-inducible protein-like [Arach... [more]
gi|1012363999|gb|KYP75182.1|1.7e-2257.14Glycine-rich RNA-binding protein GRP1A [Cajanus cajan][more]
gi|571488294|ref|XP_006590896.1|4.8e-2259.26PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Glycine max][more]
gi|659122023|ref|XP_008460935.1|4.1e-2161.36PREDICTED: glycine-rich RNA-binding protein 1-like [Cucumis melo][more]
gi|694430659|ref|XP_009342794.1|5.3e-2157.58PREDICTED: glycine-rich RNA-binding protein [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006950 response to stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g12570.1Cp4.1LG05g12570.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 11..56
score: 2.0
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 9..76
score: 3.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 8..56
score: 13
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 9..56
score: 8.8
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 8..56
score: 1.9
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 11..56
score: 4.0
NoneNo IPR availablePANTHERPTHR24012:SF41RNA-BINDING PROTEIN 42coord: 11..56
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g12570Cucsa.109630Cucumber (Gy14) v1cgycpeB0247
Cp4.1LG05g12570CmaCh20G008520Cucurbita maxima (Rimu)cmacpeB585
Cp4.1LG05g12570CmaCh02G004000Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g12570CmoCh02G004050Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g12570CmoCh20G008610Cucurbita moschata (Rifu)cmocpeB534
Cp4.1LG05g12570Cla016558Watermelon (97103) v1cpewmB751
Cp4.1LG05g12570Csa2G247040Cucumber (Chinese Long) v2cpecuB704
Cp4.1LG05g12570MELO3C023291Melon (DHL92) v3.5.1cpemeB656
Cp4.1LG05g12570ClCG11G004420Watermelon (Charleston Gray)cpewcgB634
Cp4.1LG05g12570CSPI02G12190Wild cucumber (PI 183967)cpecpiB706
Cp4.1LG05g12570Lsi10G003660Bottle gourd (USVL1VR-Ls)cpelsiB589
Cp4.1LG05g12570MELO3C023291.2Melon (DHL92) v3.6.1cpemedB786
Cp4.1LG05g12570CsaV3_2G014690Cucumber (Chinese Long) v3cpecucB0879
Cp4.1LG05g12570Bhi10G001621Wax gourdcpewgoB0958
Cp4.1LG05g12570CsGy2G012170Cucumber (Gy14) v2cgybcpeB240
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g12570Cp4.1LG16g02330Cucurbita pepo (Zucchini)cpecpeB309
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g12570Melon (DHL92) v3.6.1cpemedB816
Cp4.1LG05g12570Silver-seed gourdcarcpeB0255
Cp4.1LG05g12570Silver-seed gourdcarcpeB0440
Cp4.1LG05g12570Silver-seed gourdcarcpeB1243
Cp4.1LG05g12570Cucumber (Chinese Long) v3cpecucB0898
Cp4.1LG05g12570Wax gourdcpewgoB0932
Cp4.1LG05g12570Cucurbita pepo (Zucchini)cpecpeB274
Cp4.1LG05g12570Cucurbita pepo (Zucchini)cpecpeB496
Cp4.1LG05g12570Cucurbita pepo (Zucchini)cpecpeB506
Cp4.1LG05g12570Cucurbita moschata (Rifu)cmocpeB499
Cp4.1LG05g12570Bottle gourd (USVL1VR-Ls)cpelsiB605
Cp4.1LG05g12570Watermelon (Charleston Gray)cpewcgB662
Cp4.1LG05g12570Watermelon (97103) v1cpewmB748
Cp4.1LG05g12570Melon (DHL92) v3.5.1cpemeB684