CmoCh20G008210 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G008210
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr20 : 4057080 .. 4058161 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCATCGGAAGTTGATCCTCGGTTTTGAACCACGTCCTCGCCAGCTTTCCGGTGAACCCATAATCACCGAACAGTACGTCGGCGACGCCCTCGCCCTCTGTTCCCGGCAGCCATGCTGCCACGAGCGCGTCCAACTGCGACATGTACGGATGAATCGTCAGGGGTCGGCCGGAGACGAGGACAACGACGCACTTGACGACGTTGCACACGTGCTGGATCGTGTCCAAGCCTCCTTCCGGGATAGTCAGGTTCAAGTTGTCGCCATTGGTCTCGGCGTAGGGCGGTTCTCCTACCACGACAATGGCGTACGTGAAGTTGTTCGCCTTCACGTAATCCGCCGTCGGACTTACGTCGTGTACGACCTCCGTGTTTGGATCGACGCTTTTCTTCACCGCCTCGAGGATGGTGGTTCCGGTTGTGAGATTGTCGCCGCTGAGTCCTTTCCATTTGATCGTCCAACCGCCGCACTGGTAACCTAGATTATCAGCGTGAGTTCCGGCTACTAAGATCTTCGGCGCCTTCTTCGACAGAGGAAGAACTGGATCATCTGCATTTTCGCCGTTCTTCAATAGAACAAGTGATTTCCTCACTGCTTCTCTTGCCAAATCTCTGTGTTCCTGTTCAATTGAATTGCTAGATTTGTCAAAATGATATTCAAACTAAGTTTCTTTGTGTTTTTAGGTCAATTAACCTGGCTTCCAAGCTCATTTACAAATCTGTCATCGGCCAATGGATTCTCAAACAGCCCCATTACGAACTTGACTCTCAAGATCCTCCTTACAGCGTCGTTGATTCGGTACATCGGAACAGCCTTGCTGTTGACAAGGTAGGTAAGGCCATCGATGAACTCCTTGTAATTTGTAGGAACCATGAACTGAAACACGACAGTAAAACTAGTTTTGTAAGATCTAAGATGCCATGTTCATTGAGATTGCCTATGTTGATAATCTTACCATGTCTATTCCTGCTTGAACTCCTGATAGAATCGAGAATGTGTAATTTGAATGAGCTGGGTCTGTGATCCTATCAATACCTTCCCAATCAGAAATTACAAAACCCTGCAATAGTTTGTCCGTTC

mRNA sequence

ATGGTTCATCGGAAGTTGATCCTCGGTTTTGAACCACGTCCTCGCCAGCTTTCCGGTGAACCCATAATCACCGAACAGTACGTCGGCGACGCCCTCGCCCTCTGTTCCCGGCAGCCATGCTGCCACGAGCGCGTCCAACTGCGACATGTACGGATGAATCGTCAGGGGTCGGCCGGAGACGAGGACAACGACGCACTTGACGACGTTGCACACGTGCTGGATCGTGTCCAAGCCTCCTTCCGGGATAGTCAGGTTCAAGTTGTCGCCATTGGTCTCGGCGTAGGGCGGTTCTCCTACCACGACAATGGCGTACGTGAAGTTGTTCGCCTTCACGTAATCCGCCGTCGGACTTACGTCGTGTACGACCTCCGTGTTTGGATCGACGCTTTTCTTCACCGCCTCGAGGATGGTGGTTCCGGTTGTGAGATTGTCGCCGCTGAGTCCTTTCCATTTGATCGTCCAACCGCCGCACTGATCTTCGGCGCCTTCTTCGACAGAGGAAGAACTGGATCATCTGCATTTTCGCCGTTCTTCAATAGAACAAGTGATTTCCTCACTGCTTCTCTTGCCAAATCTCTGTCAATTAACCTGGCTTCCAAGCTCATTTACAAATCTGTCATCGGCCAATGGATTCTCAAACAGCCCCATTACGAACTTGACTCTCAAGATCCTCCTTACAGCGTCGTTGATTCGGTACATCGGAACAGCCTTGCTGTTGACAAGGTAGGTAAGGCCATCGATGAACTCCTTGTAATTTGTAGGAACCATGAACTGAAACACGACAGTAAAACTAGTTTTGTAAGATCTAAGATGCCATGTTCATTGAGATTGCCTATGTTGATAATCTTACCATGTCTATTCCTGCTTGAACTCCTGATAGAATCGAGAATGTGTAATTTGAATGAGCTGGGTCTGTGATCCTATCAATACCTTCCCAATCAGAAATTACAAAACCCTGCAATAGTTTGTCCGTTC

Coding sequence (CDS)

ATGGTTCATCGGAAGTTGATCCTCGGTTTTGAACCACGTCCTCGCCAGCTTTCCGGTGAACCCATAATCACCGAACAGTACGTCGGCGACGCCCTCGCCCTCTGTTCCCGGCAGCCATGCTGCCACGAGCGCGTCCAACTGCGACATGTACGGATGAATCGTCAGGGGTCGGCCGGAGACGAGGACAACGACGCACTTGACGACGTTGCACACGTGCTGGATCGTGTCCAAGCCTCCTTCCGGGATAGTCAGGTTCAAGTTGTCGCCATTGGTCTCGGCGTAGGGCGGTTCTCCTACCACGACAATGGCGTACGTGAAGTTGTTCGCCTTCACGTAATCCGCCGTCGGACTTACGTCGTGTACGACCTCCGTGTTTGGATCGACGCTTTTCTTCACCGCCTCGAGGATGGTGGTTCCGGTTGTGAGATTGTCGCCGCTGAGTCCTTTCCATTTGATCGTCCAACCGCCGCACTGATCTTCGGCGCCTTCTTCGACAGAGGAAGAACTGGATCATCTGCATTTTCGCCGTTCTTCAATAGAACAAGTGATTTCCTCACTGCTTCTCTTGCCAAATCTCTGTCAATTAACCTGGCTTCCAAGCTCATTTACAAATCTGTCATCGGCCAATGGATTCTCAAACAGCCCCATTACGAACTTGACTCTCAAGATCCTCCTTACAGCGTCGTTGATTCGGTACATCGGAACAGCCTTGCTGTTGACAAGGTAGGTAAGGCCATCGATGAACTCCTTGTAATTTGTAGGAACCATGAACTGAAACACGACAGTAAAACTAGTTTTGTAAGATCTAAGATGCCATGTTCATTGAGATTGCCTATGTTGATAATCTTACCATGTCTATTCCTGCTTGAACTCCTGATAGAATCGAGAATGTGTAATTTGAATGAGCTGGGTCTGTGA
Homology
[Close]
BLAST of CmoCh20G008210 vs. TrEMBL
Match: A0A0P0W314_ORYSJ (Os03g0749200 protein OS=Oryza sativa subsp. japonica GN=Os03g0749200 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.6e-16
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 1 

Query: 2   VHRKLILGFEPRPRQLSGEPIITEQYVGDALALCSRQPCCHERVQLRHVRMNRQGSAGDE 61
           +HR+L+  FEP   QL+GE +I EQ+VGDA+AL + +P   ERV    VR++ + + GDE
Sbjct: 6   IHRQLVHRFEPSTWQLAGEAVIPEQHVGDAVALRAGEPGGDERVHGADVRLHHERTPGDE 65

Query: 62  DNDALDDVAHVLDRVQASFRDSQVQVVAIGLGVGRFSYHDNGVREVVRLHVIRRRTYV-- 121
            + ALD+ AHVLD ++   RD QVQVV + L V    +H +  R VV L  +  R  V  
Sbjct: 66  HHHALDEPAHVLDHLRPRRRDGQVQVVPLRLRVRLLPHHHH--RVVVLLGALGDRALVRV 125

Query: 122 --VYDLRVWIDAFLHRLED 137
             V D R  +   L RL+D
Sbjct: 126 LRVVDHRALVHRRLDRLQD 142

[Close]
BLAST of CmoCh20G008210 vs. TrEMBL
Match: A0A0A0LM31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G251480 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 47/107 (43.93%), Postives = 59/107 (55.14%), Query Frame = 1 

Query: 144 VAAESFPFDRPTAALIFGAF-----FDRGRTGSSAFSPFFNRTSDFLTAS---LAKSLSI 203
           ++AES P D P AA  +  F          T    F   F  +S     S   L  +L  
Sbjct: 24  LSAESLPGDCPAAADCWREFRLLRSMVLSLTEEELFHQHFRNSSIEQVISSLLLLPNLPT 83

Query: 204 NLASKLIYKSVIGQWILKQPHYELDSQDPPYS-VVDSVHRNSLAVDK 242
           NLASKLIYKSV  QWILKQ H++LDSQ+P +  VVDS H+N++  DK
Sbjct: 84  NLASKLIYKSVTRQWILKQAHHKLDSQNPSHGVVVDSGHQNNVLNDK 130

[Close]
BLAST of CmoCh20G008210 vs. NCBI nr
Match: gi|937911471|dbj|BAS86391.1| (Os03g0749200 [Oryza sativa Japonica Group])

HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 1 

Query: 2   VHRKLILGFEPRPRQLSGEPIITEQYVGDALALCSRQPCCHERVQLRHVRMNRQGSAGDE 61
           +HR+L+  FEP   QL+GE +I EQ+VGDA+AL + +P   ERV    VR++ + + GDE
Sbjct: 6   IHRQLVHRFEPSTWQLAGEAVIPEQHVGDAVALRAGEPGGDERVHGADVRLHHERTPGDE 65

Query: 62  DNDALDDVAHVLDRVQASFRDSQVQVVAIGLGVGRFSYHDNGVREVVRLHVIRRRTYV-- 121
            + ALD+ AHVLD ++   RD QVQVV + L V    +H +  R VV L  +  R  V  
Sbjct: 66  HHHALDEPAHVLDHLRPRRRDGQVQVVPLRLRVRLLPHHHH--RVVVLLGALGDRALVRV 125

Query: 122 --VYDLRVWIDAFLHRLED 137
             V D R  +   L RL+D
Sbjct: 126 LRVVDHRALVHRRLDRLQD 142

[Close]
BLAST of CmoCh20G008210 vs. NCBI nr
Match: gi|700206728|gb|KGN61847.1| (hypothetical protein Csa_2G251480 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 47/107 (43.93%), Postives = 59/107 (55.14%), Query Frame = 1 

Query: 144 VAAESFPFDRPTAALIFGAF-----FDRGRTGSSAFSPFFNRTSDFLTAS---LAKSLSI 203
           ++AES P D P AA  +  F          T    F   F  +S     S   L  +L  
Sbjct: 24  LSAESLPGDCPAAADCWREFRLLRSMVLSLTEEELFHQHFRNSSIEQVISSLLLLPNLPT 83

Query: 204 NLASKLIYKSVIGQWILKQPHYELDSQDPPYS-VVDSVHRNSLAVDK 242
           NLASKLIYKSV  QWILKQ H++LDSQ+P +  VVDS H+N++  DK
Sbjct: 84  NLASKLIYKSVTRQWILKQAHHKLDSQNPSHGVVVDSGHQNNVLNDK 130

The following BLAST results are available for this feature:
BLAST of CmoCh20G008210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh20G008210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0P0W314_ORYSJ2.6e-1642.45Os03g0749200 protein OS=Oryza sativa subsp. japonica GN=Os03g0749200 PE=4 SV=1[more]
A0A0A0LM31_CUCSA1.3e-0743.93Uncharacterized protein OS=Cucumis sativus GN=Csa_2G251480 PE=4 SV=1[more]
BLAST of CmoCh20G008210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh20G008210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937911471|dbj|BAS86391.1|3.8e-1642.45Os03g0749200 [Oryza sativa Japonica Group][more]
gi|700206728|gb|KGN61847.1|1.9e-0743.93hypothetical protein Csa_2G251480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G008210.1CmoCh20G008210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G008210CmaCh20G008130Cucurbita maxima (Rimu)cmacmoB551
CmoCh20G008210MELO3C034621.2Melon (DHL92) v3.6.1cmomedB568
CmoCh20G008210CsGy2G012740Cucumber (Gy14) v2cgybcmoB209
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G008210Silver-seed gourdcarcmoB0434
CmoCh20G008210Silver-seed gourdcarcmoB0584
CmoCh20G008210Cucumber (Chinese Long) v3cmocucB0637
CmoCh20G008210Watermelon (97103) v2cmowmbB544
CmoCh20G008210Watermelon (97103) v2cmowmbB550
CmoCh20G008210Wax gourdcmowgoB0673
CmoCh20G008210Wax gourdcmowgoB0679
CmoCh20G008210Cucurbita moschata (Rifu)cmocmoB382
CmoCh20G008210Cucurbita moschata (Rifu)cmocmoB404
CmoCh20G008210Cucumber (Gy14) v1cgycmoB0252
CmoCh20G008210Cucurbita maxima (Rimu)cmacmoB519
CmoCh20G008210Cucurbita maxima (Rimu)cmacmoB606
CmoCh20G008210Wild cucumber (PI 183967)cmocpiB536
CmoCh20G008210Wild cucumber (PI 183967)cmocpiB567
CmoCh20G008210Cucumber (Chinese Long) v2cmocuB531
CmoCh20G008210Cucumber (Chinese Long) v2cmocuB561
CmoCh20G008210Melon (DHL92) v3.5.1cmomeB495
CmoCh20G008210Melon (DHL92) v3.5.1cmomeB503
CmoCh20G008210Watermelon (Charleston Gray)cmowcgB476
CmoCh20G008210Watermelon (Charleston Gray)cmowcgB485
CmoCh20G008210Watermelon (97103) v1cmowmB516
CmoCh20G008210Watermelon (97103) v1cmowmB534
CmoCh20G008210Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G008210Cucurbita pepo (Zucchini)cmocpeB521
CmoCh20G008210Cucurbita pepo (Zucchini)cmocpeB534
CmoCh20G008210Bottle gourd (USVL1VR-Ls)cmolsiB491
CmoCh20G008210Bottle gourd (USVL1VR-Ls)cmolsiB500
CmoCh20G008210Cucumber (Gy14) v2cgybcmoB940