CmoCh20G006220 (gene) Cucurbita moschata (Rifu)

NameCmoCh20G006220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr20 : 3059707 .. 3060165 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATAGCTGTTTTAAAAGCAATAAAGTTATGGCGCAAGATGAATCTTGTTTGGCTTTGTCTAATTCGCCTCCTGTGGAGGCTAAGAAAGTAGAGGAGAAACCGGTGGCCGGATCGGCTATGGCGAAGCCGAAGACGGCAGAGGAGAGAAGCGGTGCGGCTGCTGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGACGAAAATTCTGGTGGAAGTGGCGGGGATGGAGACAGAGCCGGAGTATTGAGGATTAAAGTGGTGATGTCTCAGAGAGAGTTGAAGCAGATATTAAAGGAAAACGAGAACAGTTCACGTTCGTTGGAGGAATTGATTGCTGAATTTAAGGTGAAAGGCAGAACGACGGTTTCAGATGCGATAACCGATGAAGTTGAGGATGAAAATGGAAGCAGGAGGCCGGCTTTGGAATGTATTCCTGAAGGTCTCCATTAA

mRNA sequence

ATGGGGAATAGCTGTTTTAAAAGCAATAAAGTTATGGCGCAAGATGAATCTTGTTTGGCTTTGTCTAATTCGCCTCCTGTGGAGGCTAAGAAAGTAGAGGAGAAACCGGTGGCCGGATCGGCTATGGCGAAGCCGAAGACGGCAGAGGAGAGAAGCGGTGCGGCTGCTGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGACGAAAATTCTGGTGGAAGTGGCGGGGATGGAGACAGAGCCGGAGTATTGAGGATTAAAGTGGTGATGTCTCAGAGAGAGTTGAAGCAGATATTAAAGGAAAACGAGAACAGTTCACGTTCGTTGGAGGAATTGATTGCTGAATTTAAGGTGAAAGGCAGAACGACGGTTTCAGATGCGATAACCGATGAAGTTGAGGATGAAAATGGAAGCAGGAGGCCGGCTTTGGAATGTATTCCTGAAGGTCTCCATTAA

Coding sequence (CDS)

ATGGGGAATAGCTGTTTTAAAAGCAATAAAGTTATGGCGCAAGATGAATCTTGTTTGGCTTTGTCTAATTCGCCTCCTGTGGAGGCTAAGAAAGTAGAGGAGAAACCGGTGGCCGGATCGGCTATGGCGAAGCCGAAGACGGCAGAGGAGAGAAGCGGTGCGGCTGCTGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGACGAAAATTCTGGTGGAAGTGGCGGGGATGGAGACAGAGCCGGAGTATTGAGGATTAAAGTGGTGATGTCTCAGAGAGAGTTGAAGCAGATATTAAAGGAAAACGAGAACAGTTCACGTTCGTTGGAGGAATTGATTGCTGAATTTAAGGTGAAAGGCAGAACGACGGTTTCAGATGCGATAACCGATGAAGTTGAGGATGAAAATGGAAGCAGGAGGCCGGCTTTGGAATGTATTCCTGAAGGTCTCCATTAA
BLAST of CmoCh20G006220 vs. TrEMBL
Match: A0A0A0LQE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G418890 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-33
Identity = 92/153 (60.13%), Postives = 107/153 (69.93%), Query Frame = 1

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVAGSAMAKPKTAEERSGAAAG 60
           MGN CFKSNKVMAQD+S     + PP   +E KKV+++P+ GSAMAKPK     +G AAG
Sbjct: 1   MGNICFKSNKVMAQDDS---YDDFPPHHLIEPKKVQQQPLPGSAMAKPKNG---TGGAAG 60

Query: 61  KKVVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKENENSSRSLEELIAEF 120
           KKVVRF LQEE+++  G        GVLRIKVV+SQ+ELKQILK  EN+S SLEELI E 
Sbjct: 61  KKVVRFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEEL 120

Query: 121 KVKGRTTVSDAITDEVEDENGSRRPALECIPEG 151
           KVKGR T   A      DE GS +PALECIPEG
Sbjct: 121 KVKGRATTVSA------DETGSWKPALECIPEG 141

BLAST of CmoCh20G006220 vs. TrEMBL
Match: A0A0D2SHC7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G149800 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-08
Identity = 56/157 (35.67%), Postives = 82/157 (52.23%), Query Frame = 1

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKK------VEEKPVAGSAMAKPKTAEERSGA 60
           MGN CF SNK++A+++     S + P +  K      V +   A   +       E+   
Sbjct: 1   MGN-CFTSNKILAENDDLQGCSCNQPNQLIKDMGDVTVSKSEGAADGVKTNNNNMEKKTN 60

Query: 61  AAGKKVVRFKLQEEDENSGGSGGDGD-RAGVLRIKVVMSQRELKQILKENEN-SSRSLEE 120
              KKVVRF L EE+     SG  G+ + GV+RI++V++Q ELKQIL   ++    S+E+
Sbjct: 61  KKKKKVVRFNLNEENSGDDRSGKQGESKNGVVRIRLVVTQEELKQILSSKKDLRQSSMEQ 120

Query: 121 LIAEFKVKGRTTVSDAITDEVEDENGSRRPALECIPE 150
           LI   K++G     D  T +     G+ RPALE IPE
Sbjct: 121 LIKAVKLRGVRVSEDGRTSD-----GAWRPALESIPE 151

BLAST of CmoCh20G006220 vs. TrEMBL
Match: M5WRA3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013096mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.5e-08
Identity = 55/153 (35.95%), Postives = 83/153 (54.25%), Query Frame = 1

Query: 1   MGNSCFKSN-KVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAAGKK 60
           MGN   +SN KV AQD      + +P  EAKK    P+  +   K             +K
Sbjct: 1   MGNCLRRSNNKVSAQDHEKHEEAKTP--EAKKTAPMPLPSNLKLK-------------RK 60

Query: 61  VVRFKLQEEDENSGGS--GGDGDRAGVLRIKVVMSQRELKQILKENENSSR-SLEELIAE 120
            VRF LQE++++ GG+   G+  + GV+RI++V++Q ELKQ+L   ++S+  SLE+L++ 
Sbjct: 61  SVRFDLQEDEDSGGGNVVSGESTKNGVVRIRLVVTQEELKQLLDYKKDSNHSSLEQLLSA 120

Query: 121 FKVKGRTTVSDAITDEVEDENGSRRPALECIPE 150
            + +G T VS+  T   E       P LE IPE
Sbjct: 121 VRNRG-TKVSEIGTSNDESTGSGWSPTLESIPE 137

BLAST of CmoCh20G006220 vs. TrEMBL
Match: A0A0B2SAF1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_017266 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.4e-07
Identity = 47/149 (31.54%), Postives = 83/149 (55.70%), Query Frame = 1

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAAGKKV 60
           MGN C ++NK+ +QD    A   +P ++AK  + K ++ S + +    +++     G K 
Sbjct: 1   MGN-CLRNNKISSQDHENYA--EAPVIDAKVEKVKSLSLSKLEEAPRMDQQ-----GMKK 60

Query: 61  VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKENENSSRSLEELIAEFKVK 120
           VRFK+Q +D    G  G    +  +RI+VVM+Q ELK++++  +  + SLE+L+   K++
Sbjct: 61  VRFKMQNDDNTYEGERGSKGNSRSVRIRVVMTQEELKRMMRCKDEHT-SLEQLLHAVKLR 120

Query: 121 GRTTVSDAITDEVEDENGSRRPALECIPE 150
           G         D+ +  N S +P+L+ IPE
Sbjct: 121 GGKISEVGEFDDDQGLNSSWKPSLDSIPE 140

BLAST of CmoCh20G006220 vs. TrEMBL
Match: I1KFC9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G305400 PE=4 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 46/149 (30.87%), Postives = 82/149 (55.03%), Query Frame = 1

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAAGKKV 60
           MGN C ++NK+ +QD    A   +P ++ K  + K ++ S + +    +++     G K 
Sbjct: 10  MGN-CLRNNKISSQDHENYA--EAPVIDGKVEKVKALSLSKLEEAPRMDQQ-----GMKK 69

Query: 61  VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKENENSSRSLEELIAEFKVK 120
           VRFK+Q +D    G  G    +  +RI+VVM+Q ELK++++  +  + SLE+L+   K++
Sbjct: 70  VRFKMQNDDSTYEGERGSEGNSRSVRIRVVMTQEELKRMMRCKDEHT-SLEQLLHAVKLR 129

Query: 121 GRTTVSDAITDEVEDENGSRRPALECIPE 150
           G         D+ +  N S +P+L+ IPE
Sbjct: 130 GGKISEVGEFDDDQGLNSSWKPSLDSIPE 149

BLAST of CmoCh20G006220 vs. NCBI nr
Match: gi|700208135|gb|KGN63254.1| (hypothetical protein Csa_2G418890 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 3.8e-33
Identity = 92/153 (60.13%), Postives = 107/153 (69.93%), Query Frame = 1

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVAGSAMAKPKTAEERSGAAAG 60
           MGN CFKSNKVMAQD+S     + PP   +E KKV+++P+ GSAMAKPK     +G AAG
Sbjct: 1   MGNICFKSNKVMAQDDS---YDDFPPHHLIEPKKVQQQPLPGSAMAKPKNG---TGGAAG 60

Query: 61  KKVVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKENENSSRSLEELIAEF 120
           KKVVRF LQEE+++  G        GVLRIKVV+SQ+ELKQILK  EN+S SLEELI E 
Sbjct: 61  KKVVRFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEEL 120

Query: 121 KVKGRTTVSDAITDEVEDENGSRRPALECIPEG 151
           KVKGR T   A      DE GS +PALECIPEG
Sbjct: 121 KVKGRATTVSA------DETGSWKPALECIPEG 141

BLAST of CmoCh20G006220 vs. NCBI nr
Match: gi|657976106|ref|XP_008379930.1| (PREDICTED: uncharacterized protein LOC103442921 [Malus domestica])

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 60/160 (37.50%), Postives = 84/160 (52.50%), Query Frame = 1

Query: 1   MGNSCFKSNKVMAQD-ESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAAGKK 60
           MGN    +NK+ +QD E   A   + P EA+K        +AM  P   ++       KK
Sbjct: 1   MGNCLRNNNKIASQDYEKHEAAKEAEPXEARK--------TAMPLPSNLKQE------KK 60

Query: 61  VVRFKLQEEDENSGG--SGGDGDRAGVLRIKVVMSQRELKQILKENENSSR-SLEELIAE 120
            VRF LQE+ +NSG    GGD      +RI++V++Q ELKQ+L   ++S+  SLEEL+  
Sbjct: 61  SVRFNLQEDHQNSGKRVDGGDSKTGXAVRIRLVVTQEELKQLLNYKKDSNHSSLEELLNA 120

Query: 121 FKVKGRTTVSDAITDEVEDENGSR----RPALECIPEGLH 153
            K +G T VS+      + E+ S     RP LE IPE  H
Sbjct: 121 VKSRG-TRVSEINGTSSDXESISSGXCWRPTLESIPEDQH 145

BLAST of CmoCh20G006220 vs. NCBI nr
Match: gi|823157931|ref|XP_012478847.1| (PREDICTED: uncharacterized protein LOC105794288 [Gossypium raimondii])

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 56/157 (35.67%), Postives = 82/157 (52.23%), Query Frame = 1

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKK------VEEKPVAGSAMAKPKTAEERSGA 60
           MGN CF SNK++A+++     S + P +  K      V +   A   +       E+   
Sbjct: 1   MGN-CFTSNKILAENDDLQGCSCNQPNQLIKDMGDVTVSKSEGAADGVKTNNNNMEKKTN 60

Query: 61  AAGKKVVRFKLQEEDENSGGSGGDGD-RAGVLRIKVVMSQRELKQILKENEN-SSRSLEE 120
              KKVVRF L EE+     SG  G+ + GV+RI++V++Q ELKQIL   ++    S+E+
Sbjct: 61  KKKKKVVRFNLNEENSGDDRSGKQGESKNGVVRIRLVVTQEELKQILSSKKDLRQSSMEQ 120

Query: 121 LIAEFKVKGRTTVSDAITDEVEDENGSRRPALECIPE 150
           LI   K++G     D  T +     G+ RPALE IPE
Sbjct: 121 LIKAVKLRGVRVSEDGRTSD-----GAWRPALESIPE 151

BLAST of CmoCh20G006220 vs. NCBI nr
Match: gi|694324530|ref|XP_009353278.1| (PREDICTED: uncharacterized protein LOC103944535 [Pyrus x bretschneideri])

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 1

Query: 1   MGNSCFKSNKVMAQD-ESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAAGKK 60
           MGN    +NK+ +QD E   A   +  +EA+K        +AM  P   ++       KK
Sbjct: 1   MGNCLRNNNKIASQDYEKHEAAKEAETLEARK--------TAMPLPSNLKQE------KK 60

Query: 61  VVRFKLQEEDENSGG--SGGDGDRAGVLRIKVVMSQRELKQILKENENSSR-SLEELIAE 120
            VRF LQE+ +NS     GGD    G +RI++V++Q ELKQ+L   ++S+  SLEEL+  
Sbjct: 61  SVRFNLQEDHQNSSKRVDGGDSKTGGAVRIRLVLTQEELKQLLNYKKDSNHSSLEELLNA 120

Query: 121 FKVKGRTTVSDAITDEVEDENGSR----RPALECIPEGLH 153
            K +G   VS+      +DE+ S     RP LE IPE  H
Sbjct: 121 VKSRG-IRVSEINGTSSDDESISSSSCWRPTLESIPEDQH 145

BLAST of CmoCh20G006220 vs. NCBI nr
Match: gi|1012036751|ref|XP_015953347.1| (PREDICTED: uncharacterized protein LOC107477795 [Arachis duranensis])

HSP 1 Score: 65.5 bits (158), Expect = 9.4e-08
Identity = 55/161 (34.16%), Postives = 87/161 (54.04%), Query Frame = 1

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAAGKKV 60
           MGN C +++ + AQ      + +    EA KV  + V     +     EE   A    KV
Sbjct: 1   MGN-CLRTSNISAQ------VHDENNYEAAKVVVEHVKTPPSSSSSKLEEEKEAQPSMKV 60

Query: 61  --VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEN-----ENSSRSLEEL 120
             VRFK Q++  +  G   D  R GV+RI+VVM+Q ELK++L+ N     +N++ +LEEL
Sbjct: 61  KKVRFKTQDDIIDDEGDNDDNSRNGVVRIRVVMTQEELKKMLRNNNNNNDQNNNTTLEEL 120

Query: 121 IAEFKVKGRTTVSDAITDEVEDENGS---RRPALECIPEGL 152
           ++  K++G       ++D+ +DE+G     RP+LE IPE +
Sbjct: 121 LSVVKLRGGRVFK--VSDDDDDEDGDINPWRPSLESIPEDI 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQE9_CUCSA2.6e-3360.13Uncharacterized protein OS=Cucumis sativus GN=Csa_2G418890 PE=4 SV=1[more]
A0A0D2SHC7_GOSRA1.7e-0835.67Uncharacterized protein OS=Gossypium raimondii GN=B456_005G149800 PE=4 SV=1[more]
M5WRA3_PRUPE8.5e-0835.95Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013096mg PE=4 SV=1[more]
A0A0B2SAF1_GLYSO9.4e-0731.54Uncharacterized protein OS=Glycine soja GN=glysoja_017266 PE=4 SV=1[more]
I1KFC9_SOYBN2.7e-0630.87Uncharacterized protein OS=Glycine max GN=GLYMA_06G305400 PE=4 SV=2[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700208135|gb|KGN63254.1|3.8e-3360.13hypothetical protein Csa_2G418890 [Cucumis sativus][more]
gi|657976106|ref|XP_008379930.1|2.5e-0837.50PREDICTED: uncharacterized protein LOC103442921 [Malus domestica][more]
gi|823157931|ref|XP_012478847.1|2.5e-0835.67PREDICTED: uncharacterized protein LOC105794288 [Gossypium raimondii][more]
gi|694324530|ref|XP_009353278.1|5.5e-0836.88PREDICTED: uncharacterized protein LOC103944535 [Pyrus x bretschneideri][more]
gi|1012036751|ref|XP_015953347.1|9.4e-0834.16PREDICTED: uncharacterized protein LOC107477795 [Arachis duranensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G006220.1CmoCh20G006220.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 96..120
scor

The following gene(s) are paralogous to this gene:

None