CmoCh20G001970 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G001970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S acidic ribosomal P2
Location	Cmo_Chr20 : 966215 .. 967665 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCCATTAACCGTTTTAGGCTCACGAAAGGCCCGAAAAAGAGAACCCTAATTATAAATTGTTGCATCCGCGACATTTGGCTTTTTACTATTTGACCGGCGGCTCCGATCTCCCTTCCCTCTTGTTTGCGGCTTCTGTTACGAGCTTCTCAAGTATTCTTTCTTCTCCAAATCTTGTTTTTCCATTGATTTTTATTGTGTATGTGATTCTCATTTCTGGTTTTTAACATTTGATGGTGTCGAAGCAGAAATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGGTTCTTTCACAAACTATTTGTTCTTTTCTTACAGATTCAATTGCTACATTGGCATTGTTGTTGCTGTCGAAGATAGAGTTGTTGTTATAGGATTTGATAATGACTGGGTTTTAATCGATCCGAAATTTTGTTATACTGGCCGTCTCTTTATGATTTAGTTAGGGAGTTGCTAAAAATTAATTTAAGTCTGAAATGTATTACCCGAAACGATGGGCGCTCTTATTGAATTCGTGTTATGATATCTTGTGGGGTTTTATTTACAGTTGGGGCTGAGGTGGATGAGGACAGGATTGACTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGCTAGCGTCAGTTCCATCTGGTGGCGGTGCAGTCGGCATCGCCGCCCCTGCCGGCGGTGTCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCTGACGATGTAAGTGTTTAACCTGTTGTTCATAGGCATACACATTTTGATTTGCTATTCTGCATTCTAATCTGTGAATGACTTGTACTGTATGAAAATGGACCTAAATTTTATGTCTCATCTTTCTGCAGGATATGGGTTTCAGCCTCTTTGACTGAGAAACTCATTTGGCGTCATTATCAGTTAGTATTTTTGTTGAATTTGGTTCAAGTTTCAGGGCTGTGGTAGCTTGATAGAGGTTTTTCTTTTTGACTTGTTTGGAACTCAAAAATTTTGATAGATGAATTTCAACATTTCAGTGATGACCACCATTTCAATTGTGTGAGATTAATGACTCCCAAATGGTTCTTATCTCATTGTGCATGATTAATTTTGACTATGCTAATTCCAATCATTGTTTATTTCATCATTTTTTCACTCTGTTCTGAGTGTGCGATGTGCGGTATGCCACAGAATTAGAAAATATCCATCACTTTTCCTCTCTGCCTTCGACCAACGATTTCTATGATTTCTTGCCCTCTTGTCACTGTAGAGTAAAAGATTTTATTCATGCATGGTGCATACGTTTAAAAGATTTATCATATGATTTTTCTATTTTAGTACATGCACATAGAACTATTATATTAG

mRNA sequence

CGCCCATTAACCGTTTTAGGCTCACGAAAGGCCCGAAAAAGAGAACCCTAATTATAAATTGTTGCATCCGCGACATTTGGCTTTTTACTATTTGACCGGCGGCTCCGATCTCCCTTCCCTCTTGTTTGCGGCTTCTGTTACGAGCTTCTCAAAAATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGTTGGGGCTGAGGTGGATGAGGACAGGATTGACTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGCTAGCGTCAGTTCCATCTGGTGGCGGTGCAGTCGGCATCGCCGCCCCTGCCGGCGGTGTCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCTGACGATGGCTGTGGTAGCTTGATAGAGTACATGCACATAGAACTATTATATTAG

Coding sequence (CDS)

ATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGTTGGGGCTGAGGTGGATGAGGACAGGATTGACTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGCTAGCGTCAGTTCCATCTGGTGGCGGTGCAGTCGGCATCGCCGCCCCTGCCGGCGGTGTCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCTGACGATGGCTGTGGTAGCTTGATAGAGTACATGCACATAGAACTATTATATTAG

Homology

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BLAST of CmoCh20G001970 vs. Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 7.5e-32
Identity = 79/110 (71.82%), Postives = 94/110 (85.45%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE DE++++ LL+++K KDITE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           +L+SVPSGGGA+ + APA  VAGGGAAP A E KKEEKVEEKEESD+  G
Sbjct: 61  RLSSVPSGGGAIDMGAPA-AVAGGGAAP-AEEAKKEEKVEEKEESDEDMG 108

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BLAST of CmoCh20G001970 vs. Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 5.9e-29
Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MK VAAYLLAVL GN SP  DD+  IL SVG EVD ++++ LLSQ+ GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           K ASVP GGG V +AA A   A GGAAP AAE KKEEKVEEKEESDD  G
Sbjct: 61  KFASVPCGGGGVAVAAAA--PAAGGAAP-AAEAKKEEKVEEKEESDDDMG 107

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BLAST of CmoCh20G001970 vs. Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-27
Identity = 77/110 (70.00%), Postives = 91/110 (82.73%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKV+AA+LLA+LGGNTSP  +D+K IL SVGA+ D+D+I+ LLSQVKGKDITELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAA--EQKKEEKVEEKEESDDG 109
           +LASVPSGGG V +AA AGG  GGG APAAA  E KKEEK EE+ + + G
Sbjct: 61  RLASVPSGGG-VAVAAAAGG--GGGDAPAAAAEEPKKEEKSEEESDEELG 107

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BLAST of CmoCh20G001970 vs. Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 7.2e-27
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAA+LLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPS GGG V +A+   G  GGG AP AAE KKEEK EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

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BLAST of CmoCh20G001970 vs. Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 74/115 (64.35%), Postives = 83/115 (72.17%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPSGGG     A A    GGG   +AAE KKEEK EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

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BLAST of CmoCh20G001970 vs. TrEMBL
Match: A0A0A0KGP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G151730 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.3e-38
Identity = 91/110 (82.73%), Postives = 98/110 (89.09%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK ILNSVGAE+DE+RI  LL++VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGA+ ++A AGG  GGGAA A AEQKKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVEEKEESDDDMG 110

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BLAST of CmoCh20G001970 vs. TrEMBL
Match: A0A0D2P4V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-35
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGN SP  DD+K IL SVGAE D+DRI+ LLS+VKGKDITELIASGRE
Sbjct: 69  MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 128

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAV +AAPA G  GGGAAP AAE KKEEKVEEKEESDD  G
Sbjct: 129 KLASVPSGGGAVAVAAPAAGGGGGGAAP-AAEAKKEEKVEEKEESDDDMG 177

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BLAST of CmoCh20G001970 vs. TrEMBL
Match: A0A0D2QPN4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G009000 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.3e-34
Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGN SP  DD+K IL SVGAE D+DRI+ LLS+VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAV +AAP  G  GGGAA  AAE KKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAVAVAAPTAG-GGGGAAAPAAEAKKEEKVEEKEESDDDMG 109

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BLAST of CmoCh20G001970 vs. TrEMBL
Match: A0A022R988_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016591mg PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.6e-33
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGN SP  DD+K IL SVGA+ D+D+I+ LLSQ+KGKDITELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNASPSGDDLKNILASVGADADQDKIELLLSQIKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVP+GGGAV ++AP GG  GG A  AAAE KKEEKVEEKEESDD  G
Sbjct: 61  KLASVPAGGGAVAVSAPVGGGGGGAAPAAAAETKKEEKVEEKEESDDDMG 110

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BLAST of CmoCh20G001970 vs. TrEMBL
Match: M5VRI2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012794mg PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.6e-33
Identity = 85/110 (77.27%), Postives = 93/110 (84.55%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+P  +D+K IL SVGAE D+DRI  LLS+VKGKDITELIASGRE
Sbjct: 42  MKVVAAYLLAVLGGNTTPSAEDLKDILGSVGAETDDDRIQLLLSEVKGKDITELIASGRE 101

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAV +AAP  G   G AAPAAAE KKEEKVEEKE++DD  G
Sbjct: 102 KLASVPSGGGAVAVAAP--GAGAGAAAPAAAEPKKEEKVEEKEDTDDDMG 149

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BLAST of CmoCh20G001970 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 120.2 bits (300), Expect = 9.1e-28
Identity = 74/115 (64.35%), Postives = 83/115 (72.17%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPSGGG     A A    GGG   +AAE KKEEK EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CmoCh20G001970 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family)

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-27
Identity = 74/115 (64.35%), Postives = 86/115 (74.78%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I+ LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPSGGG    AAP+ G  GG AAPA   +KKE K EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGVAVSAAPSSG-GGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

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BLAST of CmoCh20G001970 vs. TAIR10
Match: AT2G27720.2 (AT2G27720.2 60S acidic ribosomal protein family)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-24
Identity = 75/131 (57.25%), Postives = 86/131 (65.65%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNS---------------VGAEVDEDRIDSLLSQ 60
           MKVVAA+LLAVL G  SP   D+K IL S                GAE ++ +I+ LL +
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 61  VKGKDITELIASGREKLASVPS-GGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEE 115
           VKGKD+ ELIA+GREKLASVPS GGG V +A+   G  GGG AP AAE KKEEK EEKEE
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEE 120

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BLAST of CmoCh20G001970 vs. TAIR10
Match: AT5G40040.1 (AT5G40040.1 60S acidic ribosomal protein family)

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-24
Identity = 61/114 (53.51%), Postives = 83/114 (72.81%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLA L GN +P + D+K I+ SVGAE+D+++ID   S +K +D+TELIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCGSLIE 115
           K+A++ SGGGAV +A+  GG A   A PA+ E KK+E+ +E+ E D G  SL +
Sbjct: 61  KMAALSSGGGAVAVASGGGGGAAPAAEPASVESKKKEEEKEESEDDGGMMSLFD 114

[Close]

BLAST of CmoCh20G001970 vs. TAIR10
Match: AT3G28500.1 (AT3G28500.1 60S acidic ribosomal protein family)

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-21
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKV+AA+LLA LGGN +P  +D+K IL SVGAE+DE +ID L S +K  D+TELIA+GRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEE-KEESDDGCGSL 113
           K++++ SGG AV + A  GG     AA   AE KK  KVEE K+ES D  G +
Sbjct: 61  KMSALSSGGPAVAMVAGGGGGGAASAAEPVAESKK--KVEEVKDESSDDAGMM 111

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BLAST of CmoCh20G001970 vs. NCBI nr
Match: gi|659117435|ref|XP_008458601.1| (PREDICTED: 60S acidic ribosomal protein P2B-like [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 92/110 (83.64%), Postives = 100/110 (90.91%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG+DDVK ILNSVG E+DE+RI  LLS+VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGA+ ++A AGG AGGGAAPA AEQKKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMG 110

[Close]

BLAST of CmoCh20G001970 vs. NCBI nr
Match: gi|449456114|ref|XP_004145795.1| (PREDICTED: 60S acidic ribosomal protein P2B [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 9.1e-38
Identity = 91/110 (82.73%), Postives = 98/110 (89.09%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK ILNSVGAE+DE+RI  LL++VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGA+ ++A AGG  GGGAA A AEQKKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVEEKEESDDDMG 110

[Close]

BLAST of CmoCh20G001970 vs. NCBI nr
Match: gi|747083017|ref|XP_011088860.1| (PREDICTED: 60S acidic ribosomal protein P2B-like [Sesamum indicum])

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-35
Identity = 88/110 (80.00%), Postives = 96/110 (87.27%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSP  D++K IL+SVGAE D+DRI+ LLSQVKGKDITELIA+GRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPSADNLKDILSSVGAEADDDRIELLLSQVKGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVP+GGGAV +AAPAGG  GG AA A AE KKEEKVEEKEESDD  G
Sbjct: 61  KLASVPAGGGAVAVAAPAGGAGGGAAAAAPAETKKEEKVEEKEESDDDMG 110

[Close]

BLAST of CmoCh20G001970 vs. NCBI nr
Match: gi|823145907|ref|XP_012472833.1| (PREDICTED: 60S acidic ribosomal protein P2B-like [Gossypium raimondii])

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-35
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGN SP  DD+K IL SVGAE D+DRI+ LLS+VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAV +AAPA G  GGGAAP AAE KKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAVAVAAPAAGGGGGGAAP-AAEAKKEEKVEEKEESDDDMG 109

[Close]

BLAST of CmoCh20G001970 vs. NCBI nr
Match: gi|763754357|gb|KJB21688.1| (hypothetical protein B456_004G008900 [Gossypium raimondii])

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-35
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGN SP  DD+K IL SVGAE D+DRI+ LLS+VKGKDITELIASGRE
Sbjct: 69  MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 128

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAV +AAPA G  GGGAAP AAE KKEEKVEEKEESDD  G
Sbjct: 129 KLASVPSGGGAVAVAAPAAGGGGGGAAP-AAEAKKEEKVEEKEESDDDMG 177

The following BLAST results are available for this feature:

BLAST of CmoCh20G001970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA2B_MAIZE	7.5e-32	71.82	60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1	[more]
RLA2A_MAIZE	5.9e-29	70.00	60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3	[more]
RLA2_PARAR	1.1e-27	70.00	60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1	[more]
RLA21_ARATH	7.2e-27	65.52	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2	[more]
RLA22_ARATH	1.6e-26	64.35	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1	[more]

BLAST of CmoCh20G001970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGP6_CUCSA	6.3e-38	82.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G151730 PE=3 SV=1	[more]
A0A0D2P4V1_GOSRA	1.7e-35	81.82	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1	[more]
A0A0D2QPN4_GOSRA	3.3e-34	80.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G009000 PE=3 SV=1	[more]
A0A022R988_ERYGU	3.6e-33	75.45	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016591mg PE=3 SV=1	[more]
M5VRI2_PRUPE	3.6e-33	77.27	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012794mg PE=3 SV=1	[more]

BLAST of CmoCh20G001970 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27710.1	9.1e-28	64.35	60S acidic ribosomal protein family	[more]
AT3G44590.2	3.4e-27	64.35	60S acidic ribosomal protein family	[more]
AT2G27720.2	1.6e-24	57.25	60S acidic ribosomal protein family	[more]
AT5G40040.1	2.7e-24	53.51	60S acidic ribosomal protein family	[more]
AT3G28500.1	2.2e-21	54.87	60S acidic ribosomal protein family	[more]

BLAST of CmoCh20G001970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117435\|ref\|XP_008458601.1\|	2.8e-39	83.64	PREDICTED: 60S acidic ribosomal protein P2B-like [Cucumis melo]	[more]
gi\|449456114\|ref\|XP_004145795.1\|	9.1e-38	82.73	PREDICTED: 60S acidic ribosomal protein P2B [Cucumis sativus]	[more]
gi\|747083017\|ref\|XP_011088860.1\|	1.9e-35	80.00	PREDICTED: 60S acidic ribosomal protein P2B-like [Sesamum indicum]	[more]
gi\|823145907\|ref\|XP_012472833.1\|	2.5e-35	81.82	PREDICTED: 60S acidic ribosomal protein P2B-like [Gossypium raimondii]	[more]
gi\|763754357\|gb\|KJB21688.1\|	2.5e-35	81.82	hypothetical protein B456_004G008900 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027534	Ribosomal_L12

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G001970.1	CmoCh20G001970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027534	Ribosomal protein L12 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..114 score: 14
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..114 score: 6.8
None	No IPR available	PANTHER	PTHR21141:SF50	SUBFAMILY NOT NAMED	coord: 1..114 score: 6.8
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 18..112 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G001970	Cucsa.385250	Cucumber (Gy14) v1	cgycmoB1063
CmoCh20G001970	CmaCh20G001770	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G001970	CmaCh02G013360	Cucurbita maxima (Rimu)	cmacmoB607
CmoCh20G001970	Cla008658	Watermelon (97103) v1	cmowmB520
CmoCh20G001970	Csa6G151730	Cucumber (Chinese Long) v2	cmocuB555
CmoCh20G001970	MELO3C021436	Melon (DHL92) v3.5.1	cmomeB496
CmoCh20G001970	ClCG02G022040	Watermelon (Charleston Gray)	cmowcgB490
CmoCh20G001970	CSPI06G12420	Wild cucumber (PI 183967)	cmocpiB560
CmoCh20G001970	Lsi10G011780	Bottle gourd (USVL1VR-Ls)	cmolsiB484
CmoCh20G001970	Cp4.1LG16g07960	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G001970	Cp4.1LG05g04190	Cucurbita pepo (Zucchini)	cmocpeB529
CmoCh20G001970	MELO3C021436.2	Melon (DHL92) v3.6.1	cmomedB569
CmoCh20G001970	CsaV3_6G014880	Cucumber (Chinese Long) v3	cmocucB0662
CmoCh20G001970	Cla97C02G048100	Watermelon (97103) v2	cmowmbB557
CmoCh20G001970	Bhi10G000048	Wax gourd	cmowgoB0680
CmoCh20G001970	CsGy6G012450	Cucumber (Gy14) v2	cgybcmoB780
CmoCh20G001970	Carg02625	Silver-seed gourd	carcmoB1236
CmoCh20G001970	Carg18434	Silver-seed gourd	carcmoB0559

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh20G001970	CmoCh02G013750	Cucurbita moschata (Rifu)	cmocmoB405

The following block(s) are covering this gene:

None