CmoCh02G013750 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G013750
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S acidic ribosomal P2
LocationCmo_Chr02 : 8171515 .. 8172793 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCTTCGTCTTGGTTGCAGCTTCTGTTTCGATCTTCTCAAGTACGCATTCTTGTACCATTTTTTTTCGCTGATTTATTTTCTTTAAGTTCTTCTCGTTTATGGTGTCTGATATTTTATGTTGTTGAAGCAGAGATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGAGGCAACACCAGTCCCGGACTTGATGATGTGAAGGATATTCTTAATTCAGGTTCTTCTTTTACAATCTTTCTTTTAGTTAAAAGTTTAAGTTACTATACTGGTGTTGTTGCTGTTTAAGATTGATTAGTATTTTATGGTTTGGGAATGGTTAGTTTTCGTTCAATCCAAAAGATTAGGGTAGGCTGGAAATGAAGTGAAATCTTCAATTGACTGACCTGAAACGATTAGTGCTCTTAGTGAATTTGTGTTGAGATTCCTAGCGGGGTTTTGTTTACAGTCGGGGCTGAGGTCGATGTGGACAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGGACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCGTCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGTAAGTTCTTAACCGGTTATTCTAAGGGTTACACATTTTCTTTTCTACATGGTAATTGCTTGGTCTATATATATAATGACACCTAAATTTTATGTTCGTATGTTCTTCTATCTTTTTGCAGGACATGGGTTTCAGCCTCTTTGATTAAGCAACTCTTTAGTTGACGTTATCAGTTAGTGCTTTAGTTTACTTTCGTTCAAGCTTCCGAGCTGTGTAGCTTGGTAGGTGTTTTTCACTTTCTTTAACTTCATTAGTACTCACAAATTTTGATAGATGAGAGTGCAATTTTCAGTTTGAACTTCTCAGCGATTACTGTCATTTGACTTGCGTGATTTATGATTCCCGTCTCATTTCAATATGCATGATTAATTTAGAGTATGCTAATTCTCTCACTGTTTGTTCTATTGTTTCACTCTATTTGATGCGTGTGCTATTTGCACTTGGCTATAGAATTCGAAAATATGCACCACTTTTTATCTGCTGTCAATCCTAGGCCTATCAATTGATTTTAGGATCTTAATGGATTGTGCATTTGGTTTGCACTTTTCATGACATTTGAAAGATGGGGTTATCATACCAACATTCCGGTCTCTAGTCTC

mRNA sequence

TGTCTTCGTCTTGGTTGCAGCTTCTGTTTCGATCTTCTCAAAGATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGAGGCAACACCAGTCCCGGACTTGATGATGTGAAGGATATTCTTAATTCAGTCGGGGCTGAGGTCGATGTGGACAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGGACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCGTCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGACATGGGTTTCAGCCTCTTTGATTAAGCAACTCTTTAGTTGACGTTATCAGTTAGTGCTTTAGTTTACTTTCGTTCAAGCTTCCGAGCTGTGTAGCTTGGTAGGTGTTTTTCACTTTCTTTAACTTCATTAGTACTCACAAATTTTGATAGATGAGAGTGCAATTTTCAGTTTGAACTTCTCAGCGATTACTGTCATTTGACTTGCGTGATTTATGATTCCCGTCTCATTTCAATATGCATGATTAATTTAGAGTATGCTAATTCTCTCACTGTTTGTTCTATTGTTTCACTCTATTTGATGCGTGTGCTATTTGCACTTGGCTATAGAATTCGAAAATATGCACCACTTTTTATCTGCTGTCAATCCTAGGCCTATCAATTGATTTTAGGATCTTAATGGATTGTGCATTTGGTTTGCACTTTTCATGACATTTGAAAGATGGGGTTATCATACCAACATTCCGGTCTCTAGTCTC

Coding sequence (CDS)

ATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGAGGCAACACCAGTCCCGGACTTGATGATGTGAAGGATATTCTTAATTCAGTCGGGGCTGAGGTCGATGTGGACAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGGACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCGTCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGACATGGGTTTCAGCCTCTTTGATTAA
Homology
[Close]
BLAST of CmoCh02G013750 vs. Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.0e-35
Identity = 84/114 (73.68%), Postives = 97/114 (85.09%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE D +++  LLT++K KDITE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           +L+SVPSGGGA+ + APA   AGGGAAPA   KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  RLSSVPSGGGAIDMGAPA-AVAGGGAAPAEEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]
BLAST of CmoCh02G013750 vs. Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-32
Identity = 84/114 (73.68%), Postives = 91/114 (79.82%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MK VAAYLLAVL GN SP  DD+  IL SVG EVD +++  LL+Q+ GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           K ASVP GGG VAVAA A   A GGAAPAA  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVAAAA--PAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]
BLAST of CmoCh02G013750 vs. Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-31
Identity = 81/115 (70.43%), Postives = 90/115 (78.26%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAA+LLAVL G  SP   D+KDIL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPS GGG VAVA+   G  GGG APAA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh02G013750 vs. Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.5e-31
Identity = 78/114 (68.42%), Postives = 90/114 (78.95%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG    AAP   ++GGG A A AEKKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAP---SSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111

[Close]
BLAST of CmoCh02G013750 vs. Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.0e-30
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPS GGG VAVA+   G  GGG A AA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh02G013750 vs. TrEMBL
Match: A0A0A0KGP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G151730 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.3e-40
Identity = 99/115 (86.09%), Postives = 104/115 (90.43%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK ILNSVGAE+D +RI  LL +VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGA+AV+A AGGA GGGAA A AE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]
BLAST of CmoCh02G013750 vs. TrEMBL
Match: A0A0D2P4V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-39
Identity = 97/114 (85.09%), Postives = 100/114 (87.72%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGN SP  DD+K IL SVGAE D DRI  LL++VKGKDITELIASGRE
Sbjct: 69  MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 128

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAAPA G  GGGAAPAA  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 129 KLASVPSGGGAVAVAAPAAGGGGGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 182

[Close]
BLAST of CmoCh02G013750 vs. TrEMBL
Match: A0A0D2QPN4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G009000 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.5e-38
Identity = 95/114 (83.33%), Postives = 98/114 (85.96%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGN SP  DD+K IL SVGAE D DRI  LL++VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAAP  G  GG AAPAA  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPTAGGGGGAAAPAAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of CmoCh02G013750 vs. TrEMBL
Match: A0A0B0N7U2_GOSAR (60S acidic ribosomal P2 OS=Gossypium arboreum GN=F383_07943 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 94/114 (82.46%), Postives = 97/114 (85.09%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGN SP  DD+KDIL SVGAE D DRI  LL++VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNLSPSADDLKDILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVA AAP  G  G  AAPAA  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAAAAPTTGGGGASAAPAAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of CmoCh02G013750 vs. TrEMBL
Match: A0A061GVH2_THECC (60S acidic ribosomal protein P2B, putative isoform 1 OS=Theobroma cacao GN=TCM_041470 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-37
Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGN +P  DD+KDIL SVGAE D DRI  LL++VKGKDITELIA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNANPSADDLKDILGSVGAEADDDRIELLLSEVKGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVP GGGAVAVA PA G  GGGAAPAA  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPCGGGAVAVAVPAAG-GGGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 113

[Close]
BLAST of CmoCh02G013750 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family)

HSP 1 Score: 135.2 bits (339), Expect = 2.5e-32
Identity = 78/114 (68.42%), Postives = 90/114 (78.95%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG    AAP   ++GGG A A AEKKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAP---SSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111

[Close]
BLAST of CmoCh02G013750 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 131.7 bits (330), Expect = 2.8e-31
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPS GGG VAVA+   G  GGG A AA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh02G013750 vs. TAIR10
Match: AT2G27720.2 (AT2G27720.2 60S acidic ribosomal protein family)

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-29
Identity = 80/130 (61.54%), Postives = 89/130 (68.46%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNS---------------VGAEVDVDRINSLLTQ 60
           MKVVAA+LLAVL G  SP   D+KDIL S                GAE +  +I  LL +
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 61  VKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEES 115
           VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG APAA  KKEEK EEKEES
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEES 120

[Close]
BLAST of CmoCh02G013750 vs. TAIR10
Match: AT5G40040.1 (AT5G40040.1 60S acidic ribosomal protein family)

HSP 1 Score: 107.8 bits (268), Expect = 4.4e-24
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLA L GN +P + D+K I+ SVGAE+D ++I+   + +K +D+TELIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMG-FSLFD 115
           K+A++ SGGGAVAVA+  GG A   A PA+ E K +K EEKEES+DD G  SLFD
Sbjct: 61  KMAALSSGGGAVAVASGGGGGAAPAAEPASVESK-KKEEEKEESEDDGGMMSLFD 114

[Close]
BLAST of CmoCh02G013750 vs. TAIR10
Match: AT3G28500.1 (AT3G28500.1 60S acidic ribosomal protein family)

HSP 1 Score: 97.1 bits (240), Expect = 7.7e-21
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKV+AA+LLA LGGN +P  +D+K IL SVGAE+D  +I+ L + +K  D+TELIA+GRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMG-FSLFD 115
           K++++ SGG AVA+ A  GG     AA   AE K++  E K+ES DD G   LFD
Sbjct: 61  KMSALSSGGPAVAMVAGGGGGGAASAAEPVAESKKKVEEVKDESSDDAGMMGLFD 115

[Close]
BLAST of CmoCh02G013750 vs. NCBI nr
Match: gi|659117435|ref|XP_008458601.1| (PREDICTED: 60S acidic ribosomal protein P2B-like [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 99/115 (86.09%), Postives = 107/115 (93.04%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG+DDVK ILNSVG E+D +RI  LL++VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGA+AV+A AGGAAGGGAAPA AE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]
BLAST of CmoCh02G013750 vs. NCBI nr
Match: gi|449456114|ref|XP_004145795.1| (PREDICTED: 60S acidic ribosomal protein P2B [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 9.1e-40
Identity = 99/115 (86.09%), Postives = 104/115 (90.43%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK ILNSVGAE+D +RI  LL +VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGA+AV+A AGGA GGGAA A AE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]
BLAST of CmoCh02G013750 vs. NCBI nr
Match: gi|823145907|ref|XP_012472833.1| (PREDICTED: 60S acidic ribosomal protein P2B-like [Gossypium raimondii])

HSP 1 Score: 169.1 bits (427), Expect = 4.5e-39
Identity = 97/114 (85.09%), Postives = 100/114 (87.72%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGN SP  DD+K IL SVGAE D DRI  LL++VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAAPA G  GGGAAPAA  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAAGGGGGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]
BLAST of CmoCh02G013750 vs. NCBI nr
Match: gi|763754357|gb|KJB21688.1| (hypothetical protein B456_004G008900 [Gossypium raimondii])

HSP 1 Score: 169.1 bits (427), Expect = 4.5e-39
Identity = 97/114 (85.09%), Postives = 100/114 (87.72%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGN SP  DD+K IL SVGAE D DRI  LL++VKGKDITELIASGRE
Sbjct: 69  MKVVAAYLLAVLGGNASPSADDLKVILGSVGAEADDDRIELLLSEVKGKDITELIASGRE 128

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAVAVAAPA G  GGGAAPAA  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 129 KLASVPSGGGAVAVAAPAAGGGGGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 182

[Close]
BLAST of CmoCh02G013750 vs. NCBI nr
Match: gi|747083017|ref|XP_011088860.1| (PREDICTED: 60S acidic ribosomal protein P2B-like [Sesamum indicum])

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 98/115 (85.22%), Postives = 104/115 (90.43%), Query Frame = 1 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSP  D++KDIL+SVGAE D DRI  LL+QVKGKDITELIA+GRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPSADNLKDILSSVGAEADDDRIELLLSQVKGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMGFSLFD 115
           KLASVP+GGGAVAVAAPAGGA GG AA A AE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPAGGGAVAVAAPAGGAGGGAAAAAPAETKKEEKVEEKEESDDDMGFSLFD 115

The following BLAST results are available for this feature:
BLAST of CmoCh02G013750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLA2B_MAIZE4.0e-3573.6860S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1[more]
RLA2A_MAIZE1.1e-3273.6860S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3[more]
RLA21_ARATH1.6e-3170.4360S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2[more]
RLA24_ARATH4.5e-3168.4260S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=2 SV=1[more]
RLA22_ARATH5.0e-3069.5760S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1[more]
BLAST of CmoCh02G013750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGP6_CUCSA6.3e-4086.09Uncharacterized protein OS=Cucumis sativus GN=Csa_6G151730 PE=3 SV=1[more]
A0A0D2P4V1_GOSRA3.1e-3985.09Uncharacterized protein OS=Gossypium raimondii GN=B456_004G008900 PE=3 SV=1[more]
A0A0D2QPN4_GOSRA4.5e-3883.33Uncharacterized protein OS=Gossypium raimondii GN=B456_004G009000 PE=3 SV=1[more]
A0A0B0N7U2_GOSAR1.3e-3782.4660S acidic ribosomal P2 OS=Gossypium arboreum GN=F383_07943 PE=3 SV=1[more]
A0A061GVH2_THECC2.9e-3781.5860S acidic ribosomal protein P2B, putative isoform 1 OS=Theobroma cacao GN=TCM_0... [more]
BLAST of CmoCh02G013750 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G44590.22.5e-3268.42 60S acidic ribosomal protein family[more]
AT2G27710.12.8e-3169.57 60S acidic ribosomal protein family[more]
AT2G27720.23.4e-2961.54 60S acidic ribosomal protein family[more]
AT5G40040.14.4e-2458.26 60S acidic ribosomal protein family[more]
AT3G28500.17.7e-2152.17 60S acidic ribosomal protein family[more]
BLAST of CmoCh02G013750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117435|ref|XP_008458601.1|1.1e-4086.09PREDICTED: 60S acidic ribosomal protein P2B-like [Cucumis melo][more]
gi|449456114|ref|XP_004145795.1|9.1e-4086.09PREDICTED: 60S acidic ribosomal protein P2B [Cucumis sativus][more]
gi|823145907|ref|XP_012472833.1|4.5e-3985.09PREDICTED: 60S acidic ribosomal protein P2B-like [Gossypium raimondii][more]
gi|763754357|gb|KJB21688.1|4.5e-3985.09hypothetical protein B456_004G008900 [Gossypium raimondii][more]
gi|747083017|ref|XP_011088860.1|1.0e-3885.22PREDICTED: 60S acidic ribosomal protein P2B-like [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G013750.1CmoCh02G013750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027534Ribosomal protein L12 familyHAMAPMF_01478Ribosomal_L12_archcoord: 2..114
score: 16
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 1..114
score: 1.2
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 18..113
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G013750Cucsa.083210Cucumber (Gy14) v1cgycmoB0147
CmoCh02G013750Cucsa.385250Cucumber (Gy14) v1cgycmoB1066
CmoCh02G013750CmaCh20G001770Cucurbita maxima (Rimu)cmacmoB555
CmoCh02G013750CmaCh02G013360Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G013750CmaCh03G011680Cucurbita maxima (Rimu)cmacmoB651
CmoCh02G013750Cla008658Watermelon (97103) v1cmowmB585
CmoCh02G013750Cla018380Watermelon (97103) v1cmowmB576
CmoCh02G013750Csa6G151730Cucumber (Chinese Long) v2cmocuB621
CmoCh02G013750Csa6G451480Cucumber (Chinese Long) v2cmocuB630
CmoCh02G013750MELO3C021436Melon (DHL92) v3.5.1cmomeB537
CmoCh02G013750MELO3C024528Melon (DHL92) v3.5.1cmomeB574
CmoCh02G013750ClCG02G022040Watermelon (Charleston Gray)cmowcgB538
CmoCh02G013750ClCG04G009880Watermelon (Charleston Gray)cmowcgB556
CmoCh02G013750CSPI06G12420Wild cucumber (PI 183967)cmocpiB628
CmoCh02G013750CSPI06G25330Wild cucumber (PI 183967)cmocpiB639
CmoCh02G013750Lsi01G012410Bottle gourd (USVL1VR-Ls)cmolsiB546
CmoCh02G013750Lsi10G011780Bottle gourd (USVL1VR-Ls)cmolsiB525
CmoCh02G013750Cp4.1LG16g07960Cucurbita pepo (Zucchini)cmocpeB576
CmoCh02G013750Cp4.1LG05g04190Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G013750MELO3C021436.2Melon (DHL92) v3.6.1cmomedB615
CmoCh02G013750MELO3C024528.2Melon (DHL92) v3.6.1cmomedB658
CmoCh02G013750CsaV3_6G040520Cucumber (Chinese Long) v3cmocucB0748
CmoCh02G013750CsaV3_6G014880Cucumber (Chinese Long) v3cmocucB0741
CmoCh02G013750Cla97C02G048100Watermelon (97103) v2cmowmbB602
CmoCh02G013750Cla97C04G076720Watermelon (97103) v2cmowmbB620
CmoCh02G013750Bhi10G000048Wax gourdcmowgoB0738
CmoCh02G013750CsGy6G024760Cucumber (Gy14) v2cgybcmoB808
CmoCh02G013750CsGy6G012450Cucumber (Gy14) v2cgybcmoB799
CmoCh02G013750Carg02625Silver-seed gourdcarcmoB1237
CmoCh02G013750Carg18434Silver-seed gourdcarcmoB0560
CmoCh02G013750Carg10468Silver-seed gourdcarcmoB0335
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G013750CmoCh20G001970Cucurbita moschata (Rifu)cmocmoB405
CmoCh02G013750CmoCh03G011600Cucurbita moschata (Rifu)cmocmoB430
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G013750Watermelon (97103) v2cmowmbB578
CmoCh02G013750Cucurbita moschata (Rifu)cmocmoB443
CmoCh02G013750Cucurbita maxima (Rimu)cmacmoB234
CmoCh02G013750Cucurbita maxima (Rimu)cmacmoB856
CmoCh02G013750Cucumber (Chinese Long) v2cmocuB569
CmoCh02G013750Cucurbita pepo (Zucchini)cmocpeB585
CmoCh02G013750Cucurbita pepo (Zucchini)cmocpeB594
CmoCh02G013750Cucumber (Gy14) v2cgybcmoB113