CmoCh20G001450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G001450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Maturase K
Location	Cmo_Chr20 : 718446 .. 719021 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAGTACTTACTCGTGGTCCCTACTCATTGTCCCGATGCACCATCCAACAAACCATATCATGTGTGCATTGGAAGGGAAACAAAAAGGGATGATGCATCATCCAGCAAACCATATAATGTGTAGATTGGAAGGGATGTTGGAATGCGTAAAATGACTGCGCTTAAAATCCTATTTAAATATAACCTGACTACCTCCCGAAATCAGGGAAGGGAAGGGAATACAGGGTCCTCTTCAGTCGCTTCTCTTTGGGCTGCCTTGAATTCCCCTCGGCCGACTGATTGATCTGATCCTTTCTTTCTTGCTTTCACTGCTCTTTCTCCTTTACTGGTATGGAGTCAGATGCTAGAAAATTCATTTCTAATAGATAATGCTACAAAGAAAATCGATACACTAGTTCCTATTATTACTCTGCTTGGATCATTGGCTAAAGCGAAATTTTGTAATGTGTTAGGGCATCCCATTAGTAAGCCGACCTGGATCGATTCGTCGGATTTTTCTATTATTGATCGATTTGTGCAAAAATGGTCACAACGCATCGTGGAGAGTTTGCACCGGGAGTTGCTCTTCTAA

mRNA sequence

ATGTCTAAGTACTTACTCGTGGTCCCTACTCATTGTCCCGATGCACCATCCAACAAACCATATCATATGCTAGAAAATTCATTTCTAATAGATAATGCTACAAAGAAAATCGATACACTAGTTCCTATTATTACTCTGCTTGGATCATTGGCTAAAGCGAAATTTTGTAATGTGTTAGGGCATCCCATTAGTAAGCCGACCTGGATCGATTCGTCGGATTTTTCTATTATTGATCGATTTGTGCAAAAATGGTCACAACGCATCGTGGAGAGTTTGCACCGGGAGTTGCTCTTCTAA

Coding sequence (CDS)

ATGTCTAAGTACTTACTCGTGGTCCCTACTCATTGTCCCGATGCACCATCCAACAAACCATATCATATGCTAGAAAATTCATTTCTAATAGATAATGCTACAAAGAAAATCGATACACTAGTTCCTATTATTACTCTGCTTGGATCATTGGCTAAAGCGAAATTTTGTAATGTGTTAGGGCATCCCATTAGTAAGCCGACCTGGATCGATTCGTCGGATTTTTCTATTATTGATCGATTTGTGCAAAAATGGTCACAACGCATCGTGGAGAGTTTGCACCGGGAGTTGCTCTTCTAA

Homology

[Close]

BLAST of CmoCh20G001450 vs. Swiss-Prot
Match: MATK_CUCSA (Maturase K OS=Cucumis sativus GN=matK PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.4e-25
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNAT+K+DTLVPIITLL SLAKAKFCNVLGHPISKPTWIDSSDF IIDRF++
Sbjct: 347 MLENSFLIDNATQKLDTLVPIITLLASLAKAKFCNVLGHPISKPTWIDSSDFDIIDRFLR 406

[Close]

BLAST of CmoCh20G001450 vs. Swiss-Prot
Match: MATK_CAROR (Maturase K OS=Carpinus orientalis GN=matK PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.1e-23
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 10  THCPDAPSNKPYHMLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWI 69
           ++ P  PS  P  MLENSF+I+NA KK+DT+VPII L+GSLAKAKFCN LGHPISKPTW 
Sbjct: 334 SNVPLNPSMVPSQMLENSFVINNAPKKLDTIVPIIPLIGSLAKAKFCNALGHPISKPTWA 393

Query: 70  DSSDFSIIDRFVQ 83
           D SDF II+RFV+
Sbjct: 394 DLSDFDIINRFVR 406

[Close]

BLAST of CmoCh20G001450 vs. Swiss-Prot
Match: MATK_CARBE (Maturase K OS=Carpinus betulus GN=matK PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.1e-23
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 10  THCPDAPSNKPYHMLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWI 69
           ++ P  PS  P  MLENSF+I+NA KK+DT+VPII L+GSLAKAKFCN LGHPISKPTW 
Sbjct: 334 SNVPLNPSMVPSQMLENSFVINNAPKKLDTIVPIIPLIGSLAKAKFCNALGHPISKPTWA 393

Query: 70  DSSDFSIIDRFVQ 83
           D SDF II+RFV+
Sbjct: 394 DLSDFDIINRFVR 406

[Close]

BLAST of CmoCh20G001450 vs. Swiss-Prot
Match: MATK_VAUCA (Maturase K OS=Vauquelinia californica GN=matK PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.6e-22
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV 82
           MLENSFL+DNA KK+DTLVPII L+GSLAK KFCN LGHPISK TW DSSDF IIDRFV
Sbjct: 347 MLENSFLMDNAMKKLDTLVPIIPLIGSLAKVKFCNALGHPISKSTWADSSDFDIIDRFV 405

[Close]

BLAST of CmoCh20G001450 vs. Swiss-Prot
Match: MATK_OCHPY (Maturase K OS=Ochroma pyramidale GN=matK PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.3e-22
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 16  PSNKPYHMLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFS 75
           PS     MLENSF+IDNA KK+DT +PII+L+GSL+KAKFCN LGHPISKPTW DSSD  
Sbjct: 338 PSVVRSQMLENSFIIDNAMKKLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSSDSD 397

Query: 76  IIDRFVQ 83
           IIDRFV+
Sbjct: 398 IIDRFVR 404

[Close]

BLAST of CmoCh20G001450 vs. TrEMBL
Match: A0A0S2IGE8_CUCMO (Maturase K OS=Cucurbita moschata GN=matK PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

[Close]

BLAST of CmoCh20G001450 vs. TrEMBL
Match: A0A0S2IEX1_9ROSI (Maturase K OS=Cucurbita ficifolia GN=matK PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

[Close]

BLAST of CmoCh20G001450 vs. TrEMBL
Match: G8CZ17_CUCPE (Maturase K (Fragment) OS=Cucurbita pepo subsp. ovifera GN=matK PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 310 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 369

[Close]

BLAST of CmoCh20G001450 vs. TrEMBL
Match: G8CZ13_9ROSI (Maturase K (Fragment) OS=Cucurbita okeechobeensis subsp. okeechobeensis GN=matK PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 311 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 370

[Close]

BLAST of CmoCh20G001450 vs. TrEMBL
Match: G8CZ02_9ROSI (Maturase K (Fragment) OS=Cucurbita argyrosperma var. palmeri GN=matK PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 311 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 370

[Close]

BLAST of CmoCh20G001450 vs. TAIR10
Match: ATCG00040.1 (ATCG00040.1 maturase K)

HSP 1 Score: 90.1 bits (222), Expect = 8.1e-19
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDN   K+D+ +PI +++GSLAK KFCNVLGHPISK TW DSSD  I++RFV+
Sbjct: 369 MLENSFLIDNVRIKLDSKIPISSIIGSLAKDKFCNVLGHPISKATWTDSSDSDILNRFVR 428

[Close]

BLAST of CmoCh20G001450 vs. NCBI nr
Match: gi|111053131|gb|ABH03822.1| (maturase K, partial (chloroplast) [Cucurbita pepo])

HSP 1 Score: 122.1 bits (305), Expect = 5.4e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 303 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 362

[Close]

BLAST of CmoCh20G001450 vs. NCBI nr
Match: gi|952955564|gb|ALO22910.1| (maturase K (plastid) [Cucurbita pedatifolia])

HSP 1 Score: 122.1 bits (305), Expect = 5.4e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

[Close]

BLAST of CmoCh20G001450 vs. NCBI nr
Match: gi|1002159560|gb|AMM75946.1| (maturase K, partial (chloroplast) [Cucurbita pepo])

HSP 1 Score: 122.1 bits (305), Expect = 5.4e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 187 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 246

[Close]

BLAST of CmoCh20G001450 vs. NCBI nr
Match: gi|353330131|gb|AEQ92174.1| (maturase K, partial (chloroplast) [Cucurbita cordata])

HSP 1 Score: 122.1 bits (305), Expect = 5.4e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 311 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 370

[Close]

BLAST of CmoCh20G001450 vs. NCBI nr
Match: gi|111053129|gb|ABH03821.1| (maturase K, partial (chloroplast) [Cucurbita ficifolia])

HSP 1 Score: 122.1 bits (305), Expect = 5.4e-25
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 300 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 359

The following BLAST results are available for this feature:

BLAST of CmoCh20G001450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MATK_CUCSA	5.4e-25	90.00	Maturase K OS=Cucumis sativus GN=matK PE=3 SV=1	[more]
MATK_CAROR	5.1e-23	69.86	Maturase K OS=Carpinus orientalis GN=matK PE=3 SV=1	[more]
MATK_CARBE	5.1e-23	69.86	Maturase K OS=Carpinus betulus GN=matK PE=3 SV=1	[more]
MATK_VAUCA	5.6e-22	83.05	Maturase K OS=Vauquelinia californica GN=matK PE=3 SV=1	[more]
MATK_OCHPY	7.3e-22	73.13	Maturase K OS=Ochroma pyramidale GN=matK PE=3 SV=1	[more]

BLAST of CmoCh20G001450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IGE8_CUCMO	3.8e-25	98.33	Maturase K OS=Cucurbita moschata GN=matK PE=3 SV=1	[more]
A0A0S2IEX1_9ROSI	3.8e-25	98.33	Maturase K OS=Cucurbita ficifolia GN=matK PE=3 SV=1	[more]
G8CZ17_CUCPE	3.8e-25	98.33	Maturase K (Fragment) OS=Cucurbita pepo subsp. ovifera GN=matK PE=4 SV=1	[more]
G8CZ13_9ROSI	3.8e-25	98.33	Maturase K (Fragment) OS=Cucurbita okeechobeensis subsp. okeechobeensis GN=matK ...	[more]
G8CZ02_9ROSI	3.8e-25	98.33	Maturase K (Fragment) OS=Cucurbita argyrosperma var. palmeri GN=matK PE=4 SV=1	[more]

BLAST of CmoCh20G001450 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00040.1	8.1e-19	68.33	ATCG00040.1 maturase K	[more]

BLAST of CmoCh20G001450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|111053131\|gb\|ABH03822.1\|	5.4e-25	98.33	maturase K, partial (chloroplast) [Cucurbita pepo]	[more]
gi\|952955564\|gb\|ALO22910.1\|	5.4e-25	98.33	maturase K (plastid) [Cucurbita pedatifolia]	[more]
gi\|1002159560\|gb\|AMM75946.1\|	5.4e-25	98.33	maturase K, partial (chloroplast) [Cucurbita pepo]	[more]
gi\|353330131\|gb\|AEQ92174.1\|	5.4e-25	98.33	maturase K, partial (chloroplast) [Cucurbita cordata]	[more]
gi\|111053129\|gb\|ABH03821.1\|	5.4e-25	98.33	maturase K, partial (chloroplast) [Cucurbita ficifolia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024937	Domain_X

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G001450.1	CmoCh20G001450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024937	Domain X	PFAM	PF01348	Intron_maturas2	coord: 35..82 score: 1.
None	No IPR available	PANTHER	PTHR34811	FAMILY NOT NAMED	coord: 22..82 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G001450	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G001450	Cucurbita pepo (Zucchini)	cmocpeB535
CmoCh20G001450	Bottle gourd (USVL1VR-Ls)	cmolsiB484
CmoCh20G001450	Cucumber (Gy14) v2	cgybcmoB777
CmoCh20G001450	Melon (DHL92) v3.6.1	cmomedB585
CmoCh20G001450	Silver-seed gourd	carcmoB1236
CmoCh20G001450	Cucumber (Chinese Long) v3	cmocucB0659
CmoCh20G001450	Watermelon (97103) v2	cmowmbB557
CmoCh20G001450	Wax gourd	cmowgoB0687
CmoCh20G001450	Cucurbita moschata (Rifu)	cmocmoB405
CmoCh20G001450	Cucumber (Gy14) v1	cgycmoB0161
CmoCh20G001450	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G001450	Cucurbita maxima (Rimu)	cmacmoB607
CmoCh20G001450	Wild cucumber (PI 183967)	cmocpiB557
CmoCh20G001450	Cucumber (Chinese Long) v2	cmocuB552
CmoCh20G001450	Melon (DHL92) v3.5.1	cmomeB509
CmoCh20G001450	Watermelon (Charleston Gray)	cmowcgB490
CmoCh20G001450	Watermelon (97103) v1	cmowmB520