CmoCh19G011270 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G011270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nucleolar complex-associated protein, putative
Location	Cmo_Chr19 : 9556953 .. 9558630 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTTGATCCTCAGGACTTTTCTGTCCAGCTGTACAATATTGTACTCGAGTACAGGCCTGTAAGGTTAGTGCTGAACTCTAAACTAGAATGTTAAAATTGTTGCTGGTTCTTTTAAAAGCAAGCCTGGTTAATGTTTGTTCCAAGGATTGTTTTAATATTTATGCTCTTCATTACAACAAATTCTCTGATAACCTAATCTTGGGAAGAATTTCTGATGTTACACTGGGATTCATCACCAAGCATCCAGTCGTTATGTGAACCTCAGATTAAAGCTTTCAAGTTTATAAGAATTCTTGGACATTACTTGCTTATCCCCATGTAAACCATAACAATTTTGATTTTAATTTTTAGGGTAAGTTCATTTGTGGGCAGTCTGGTGCACATGCCTTGGGGTCCTTGTTATGATGTAATTTTAATACCTTGTTCCCTGGATATTATGATTGTTTATCACTAAGGGTGAGACTACATTAATATTTATAGTTTCTACTACTCATCTGCCATCTGCTATCATTTATGTTTTATTATTATTATTTTTGAATGGGTAACATTCAAGTTTCACTCACAGAGACCATGGTGGATTGTTAGCTGAAGCTTTGAAGATAATGTTGTGCGATAATAGACAGCATGCCATGCAGAAGGCAGCTGCATTTATTAAGCGTTTGGCTACTTTCTCATTATGCTTTGAATCTGCAGAGTCGTTGGCAGGTATATTAAAATTCCTTTTAGTTTTGATGACTTTTATTTAACCGTGAATTTGTGTGGCTATTTACTGCCTTGGTCACCGTAAAGCATCTTCTTCAGAAAAATGTCAAGTGCCGCAACCTTTTGGAAAACGATTCTTGGGGAGGTTCAGTGTCTGGCTCAATTGCGGTAAGGTTTCGTTGTAACTAGTTGAGATATATGACAGCTTTGCATGATGTTTATCTCTCCCGTATTTCACGAACACGAGAAAACAAAAAATCACCTAGCTTTTCTGCTATGACATGTTTAGAACGACTTTTTCAAGTGAAAAAAAGTATTATAAGCATTTAGAAAGTCGGTCAAATTAGGCGATTTCGTAACGGCCTGTGAAATTGAGCTTATTGATTCAATATCAGACATCCTTCTTCCCACCTCAACCTACTCACAGGAGGAAAGAGATAAACTAATTTTTGCTGATTTGATATGCAGAAATACTAGCCATATGCTTCTGATCCAACTTTGAGCGGTGCTCTTGCTTCTGTCCTTTGGGAACTTAATCTTCTGTGGAAGCATTATCATCCAGCTGTCTCAAAGATGTCAACGAGCATATCAAGCATGAATAGTGCTCAAAACCAAGTGTACATCTCCACGGTTTCTCCCCAACAGGCATTCAAAGACTTGTCGCTGGAATAGGAGTCTTTCAACCCAAAATTTAATGTCCGAAAAGTTGAAAAGAAAAAAAGAGCTAGCGAAGTGAAGGAGAAACTTTCAACAAGATTCTTTCTTCTCCGGGACATCAAGGACAATGAAAGGCTGAGAGGTGAATTGGACCGTACCACTTTGTCTTTGCAGCGATATGAAGAACACAAAAGGCAAAAGAGAAAAACTAAAAGATCAAGGTATGTTTAACTTTGTTATTTGTGATTTCTTGGTGTTAAAATCTTCATGGTTGCAAGAAATGTAGATTAATTAAGCTGAGAGGAAATGTGTAG

mRNA sequence

ATGAATGTTGATCCTCAGGACTTTTCTGTCCAGCTGTACAATATTGTACTCGAGTACAGGCCTGTAAGTTTCACTCACAGAGACCATGGTGGATTGTTAGCTGAAGCTTTGAAGATAATGTTGTGCGATAATAGACAGCATGCCATGCAGAAGGCAGCTGCATTTATTAAGCGTTTGGCTACTTTCTCATTATGCTTTGAATCTGCAGAGTCGTTGGCAGCATCTTCTTCAGAAAAATGTCAAGTGCCGCAACCTTTTGGAAAACGATTCTTGGGGAGGTTCAGTGTCTGGCTCAATTGCGCTTTGCATGATGTTTATCTCTCCCGTATTTCACGAACACGAGAAAACAAAAAATCACCTAGCTTTTCTGCTATGACATGTTTAGAACGACTTTTTCAACCATATGCTTCTGATCCAACTTTGAGCGGTGCTCTTGCTTCTGTCCTTTGGGAACTTAATCTTCTGTGGAAGCATTATCATCCAGCTGTCTCAAAGATGTCAACGAGCATATCAAGCATGAATAGTGCTCAAAACCAAGTGTACATCTCCACGGAGTCTTTCAACCCAAAATTTAATGTCCGAAAAGTTGAAAAGAAAAAAAGAGCTAGCGAAGTGAAGGAGAAACTTTCAACAAGATTCTTTCTTCTCCGGGACATCAAGGACAATGAAAGGCTGAGAGGTGAATTGGACCGTACCACTTTGTCTTTGCAGCGATATGAAGAACACAAAAGGCAAAAGAGAAAAACTAAAAGATCAAGATTAATTAAGCTGAGAGGAAATGTGTAG

Coding sequence (CDS)

ATGAATGTTGATCCTCAGGACTTTTCTGTCCAGCTGTACAATATTGTACTCGAGTACAGGCCTGTAAGTTTCACTCACAGAGACCATGGTGGATTGTTAGCTGAAGCTTTGAAGATAATGTTGTGCGATAATAGACAGCATGCCATGCAGAAGGCAGCTGCATTTATTAAGCGTTTGGCTACTTTCTCATTATGCTTTGAATCTGCAGAGTCGTTGGCAGCATCTTCTTCAGAAAAATGTCAAGTGCCGCAACCTTTTGGAAAACGATTCTTGGGGAGGTTCAGTGTCTGGCTCAATTGCGCTTTGCATGATGTTTATCTCTCCCGTATTTCACGAACACGAGAAAACAAAAAATCACCTAGCTTTTCTGCTATGACATGTTTAGAACGACTTTTTCAACCATATGCTTCTGATCCAACTTTGAGCGGTGCTCTTGCTTCTGTCCTTTGGGAACTTAATCTTCTGTGGAAGCATTATCATCCAGCTGTCTCAAAGATGTCAACGAGCATATCAAGCATGAATAGTGCTCAAAACCAAGTGTACATCTCCACGGAGTCTTTCAACCCAAAATTTAATGTCCGAAAAGTTGAAAAGAAAAAAAGAGCTAGCGAAGTGAAGGAGAAACTTTCAACAAGATTCTTTCTTCTCCGGGACATCAAGGACAATGAAAGGCTGAGAGGTGAATTGGACCGTACCACTTTGTCTTTGCAGCGATATGAAGAACACAAAAGGCAAAAGAGAAAAACTAAAAGATCAAGATTAATTAAGCTGAGAGGAAATGTGTAG

Homology

[Close]

BLAST of CmoCh19G011270 vs. TrEMBL
Match: A0A0A0K7H5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238410 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.0e-69
Identity = 168/283 (59.36%), Postives = 186/283 (65.72%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYNIVL+YRP     RD GGLLAEALKIMLCD+RQH MQKAAAFIKRLA
Sbjct: 569 LNVDLQDFFVQLYNIVLDYRP----GRDQGGLLAEALKIMLCDDRQHDMQKAAAFIKRLA 628

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TFSLCF SAESLAA  + +                   +  L +V    +        S 
Sbjct: 629 TFSLCFGSAESLAALVTVR-------------------HLLLKNVKCRNLLENDAGGGSV 688

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
           S S        +QPYA+DP LSGALASVLWEL+LLWKHYHPAVS M+  IS+MNSAQNQV
Sbjct: 689 SGSIAK-----YQPYATDPNLSGALASVLWELDLLWKHYHPAVSTMAAGISNMNSAQNQV 748

Query: 181 YIS--------------TESFNPKFNVRKVEKKKRAS----------------EVKEKLS 240
           YIS               ESFNP+FN RK+ K+KR S                EVKEKLS
Sbjct: 749 YISIVSPQQAFKDLSLEQESFNPQFNARKINKRKRGSESSQSTLDTCGTIDENEVKEKLS 808

Query: 241 TRFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQKRKTKRSR 254
           TRFFLLRDIKDNERLR ELDRTTLSLQ YEE+KRQKRKTK+SR
Sbjct: 809 TRFFLLRDIKDNERLRSELDRTTLSLQLYEEYKRQKRKTKKSR 823

[Close]

BLAST of CmoCh19G011270 vs. TrEMBL
Match: A0A061FAC6_THECC (Nucleolar complex protein 3 isoform 1 OS=Theobroma cacao GN=TCM_032975 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.8e-56
Identity = 148/287 (51.57%), Postives = 173/287 (60.28%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYN+VLEYRP     RD GG+LAEALKIMLCD+RQH MQKAAAF KRLA
Sbjct: 570 LNVDLQDFFVQLYNLVLEYRP----GRDQGGVLAEALKIMLCDDRQHDMQKAAAFAKRLA 629

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TFSLCF SAES+AA  + K                   N    +V    +        S 
Sbjct: 630 TFSLCFGSAESMAALVTLK-------------------NLLQKNVKCRNLLENDAGGGSV 689

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
           S S        +QPYASDP LSGALASVLWELNLL KHYHP VS ++ SIS MN+AQNQV
Sbjct: 690 SGSIAK-----YQPYASDPNLSGALASVLWELNLLSKHYHPTVSTLAASISCMNTAQNQV 749

Query: 181 YIS-------------TESFNPKFNVRKVEKKKR-----------------ASEVKEKLS 240
           Y+S              ESF+PKF+ +K   K++                  +EV +KL 
Sbjct: 750 YLSITPQQAFINLSLEQESFDPKFSTQKSNNKRKRGTGPSTLASINPTSIDENEVSKKLG 809

Query: 241 TRFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQ----KRKTKRSR 254
             F LLRDIK+NERLRGELDRT  SLQ YEE+K+Q    K KTK+S+
Sbjct: 810 RHFMLLRDIKENERLRGELDRTRSSLQLYEEYKKQRKSLKHKTKKSK 828

[Close]

BLAST of CmoCh19G011270 vs. TrEMBL
Match: A0A061FB71_THECC (Binding isoform 2 OS=Theobroma cacao GN=TCM_032975 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.8e-56
Identity = 148/287 (51.57%), Postives = 173/287 (60.28%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYN+VLEYRP     RD GG+LAEALKIMLCD+RQH MQKAAAF KRLA
Sbjct: 390 LNVDLQDFFVQLYNLVLEYRP----GRDQGGVLAEALKIMLCDDRQHDMQKAAAFAKRLA 449

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TFSLCF SAES+AA  + K                   N    +V    +        S 
Sbjct: 450 TFSLCFGSAESMAALVTLK-------------------NLLQKNVKCRNLLENDAGGGSV 509

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
           S S        +QPYASDP LSGALASVLWELNLL KHYHP VS ++ SIS MN+AQNQV
Sbjct: 510 SGSIAK-----YQPYASDPNLSGALASVLWELNLLSKHYHPTVSTLAASISCMNTAQNQV 569

Query: 181 YIS-------------TESFNPKFNVRKVEKKKR-----------------ASEVKEKLS 240
           Y+S              ESF+PKF+ +K   K++                  +EV +KL 
Sbjct: 570 YLSITPQQAFINLSLEQESFDPKFSTQKSNNKRKRGTGPSTLASINPTSIDENEVSKKLG 629

Query: 241 TRFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQ----KRKTKRSR 254
             F LLRDIK+NERLRGELDRT  SLQ YEE+K+Q    K KTK+S+
Sbjct: 630 RHFMLLRDIKENERLRGELDRTRSSLQLYEEYKKQRKSLKHKTKKSK 648

[Close]

BLAST of CmoCh19G011270 vs. TrEMBL
Match: A0A061FAQ4_THECC (Nucleolar complex protein 3 isoform 3 OS=Theobroma cacao GN=TCM_032975 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.8e-56
Identity = 148/287 (51.57%), Postives = 173/287 (60.28%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYN+VLEYRP     RD GG+LAEALKIMLCD+RQH MQKAAAF KRLA
Sbjct: 421 LNVDLQDFFVQLYNLVLEYRP----GRDQGGVLAEALKIMLCDDRQHDMQKAAAFAKRLA 480

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TFSLCF SAES+AA  + K                   N    +V    +        S 
Sbjct: 481 TFSLCFGSAESMAALVTLK-------------------NLLQKNVKCRNLLENDAGGGSV 540

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
           S S        +QPYASDP LSGALASVLWELNLL KHYHP VS ++ SIS MN+AQNQV
Sbjct: 541 SGSIAK-----YQPYASDPNLSGALASVLWELNLLSKHYHPTVSTLAASISCMNTAQNQV 600

Query: 181 YIS-------------TESFNPKFNVRKVEKKKR-----------------ASEVKEKLS 240
           Y+S              ESF+PKF+ +K   K++                  +EV +KL 
Sbjct: 601 YLSITPQQAFINLSLEQESFDPKFSTQKSNNKRKRGTGPSTLASINPTSIDENEVSKKLG 660

Query: 241 TRFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQ----KRKTKRSR 254
             F LLRDIK+NERLRGELDRT  SLQ YEE+K+Q    K KTK+S+
Sbjct: 661 RHFMLLRDIKENERLRGELDRTRSSLQLYEEYKKQRKSLKHKTKKSK 679

[Close]

BLAST of CmoCh19G011270 vs. TrEMBL
Match: M5WM32_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016725mg PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.4e-53
Identity = 143/292 (48.97%), Postives = 176/292 (60.27%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYNI+LEYRP     RD G +LAEALKIMLC++RQH MQKAAAF+KRLA
Sbjct: 570 LNVDLQDFFVQLYNIILEYRP----GRDQGEVLAEALKIMLCEDRQHDMQKAAAFVKRLA 629

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TFSLC  SAES+AA  + K                   +  L +V    +        S 
Sbjct: 630 TFSLCSGSAESMAALVTLK-------------------HLLLKNVKCRNLLENDAGGGSV 689

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
           S S        + PYASDP LSGALASVLWELNLL +HYHPAVS M++SISSMN+A NQV
Sbjct: 690 SGSVAK-----YHPYASDPNLSGALASVLWELNLLTQHYHPAVSSMASSISSMNTAHNQV 749

Query: 181 YIST---------------ESFNPKFNVRKVE-KKKRASE-------------------- 240
           Y+ST               ESF P  +++K   K+KR S+                    
Sbjct: 750 YLSTISPQQAFTDFSLERPESFKPPSDIKKSNNKRKRGSDPSVSAVIETSADTTSIDEDD 809

Query: 241 VKEKLSTRFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQKRKTKRSRLIK 257
           V++KLS  F LLRDIK+N+RLR ELD TT S+Q YEE+K+QK+K K+ ++ K
Sbjct: 810 VRKKLSAHFMLLRDIKENQRLRAELDGTTSSIQLYEEYKQQKKKAKKPKVKK 833

[Close]

BLAST of CmoCh19G011270 vs. TAIR10
Match: AT1G79150.1 (AT1G79150.1 binding)

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-42
Identity = 114/282 (40.43%), Postives = 159/282 (56.38%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYN++LEYRP     RD G +LAE+LKIMLCD+R   MQKAAAF+KRLA
Sbjct: 572 LNVDLQDFFVQLYNLILEYRP----GRDSGVILAESLKIMLCDDRHQDMQKAAAFVKRLA 631

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TF+LCF  AES++A  + K  + +    R         N   +D     +S +       
Sbjct: 632 TFALCFGCAESMSALVTLKTLLQKNVKCR---------NLLENDAGGGSVSGSIAK---- 691

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
                      +QPYA+DP LSGALA+VLWEL+LL KHYHPA+S M+T++S+MN++Q+Q 
Sbjct: 692 -----------YQPYATDPNLSGALATVLWELSLLSKHYHPAISTMATTVSNMNTSQSQT 751

Query: 181 YIST--------------ESFNPKFNVRKVEKKKRASEVKE---------------KLST 240
           ++S               ESF PK   RK+  K++   + E               KL  
Sbjct: 752 FLSAVTPQQAFADFSLVKESFEPKNESRKLNNKRKRESLPEEAKNVPEIDMVKLSKKLKE 811

Query: 241 RFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQKRKTKRSR 254
            F +LRDIK++ER+R EL ++       +++   K+K K  +
Sbjct: 812 NFTILRDIKEDERVRMELLQSEEKKPLKKQNNVVKKKLKNPK 825

[Close]

BLAST of CmoCh19G011270 vs. NCBI nr
Match: gi|659092555|ref|XP_008447119.1| (PREDICTED: nucleolar complex protein 3 homolog [Cucumis melo])

HSP 1 Score: 277.7 bits (709), Expect = 2.1e-71
Identity = 171/283 (60.42%), Postives = 190/283 (67.14%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYNIVL+YRP     RD GGLLAEALKIMLCD+RQH MQKAAAFIKRLA
Sbjct: 570 LNVDLQDFFVQLYNIVLDYRP----GRDQGGLLAEALKIMLCDDRQHDMQKAAAFIKRLA 629

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TFSLCF SAESLAA  + +                   +  L +V    +        S 
Sbjct: 630 TFSLCFGSAESLAALVTVR-------------------HLLLKNVKCRNLLENDAGGGSV 689

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
           S S        +QPYA+DP LSGALASVLWEL+LLWKHYHPAVSKM+ SIS+MNSAQNQV
Sbjct: 690 SGSIAK-----YQPYATDPNLSGALASVLWELDLLWKHYHPAVSKMAASISNMNSAQNQV 749

Query: 181 YIST--------------ESFNPKFNVRKVEKKKRAS----------------EVKEKLS 240
           YIST              ESFNP+FN RK+ K+KRAS                EVKEKLS
Sbjct: 750 YISTVSPQQAFKDLSLEQESFNPQFNTRKISKRKRASESSQSTPNTCGTIDENEVKEKLS 809

Query: 241 TRFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQKRKTKRSR 254
           TRFFLLRDIKDNERLR EL+RTTLSLQ YEE+KRQKRKTK+SR
Sbjct: 810 TRFFLLRDIKDNERLRSELERTTLSLQLYEEYKRQKRKTKKSR 824

[Close]

BLAST of CmoCh19G011270 vs. NCBI nr
Match: gi|449444134|ref|XP_004139830.1| (PREDICTED: nucleolar complex protein 3 homolog [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 1.5e-69
Identity = 168/283 (59.36%), Postives = 186/283 (65.72%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYNIVL+YRP     RD GGLLAEALKIMLCD+RQH MQKAAAFIKRLA
Sbjct: 569 LNVDLQDFFVQLYNIVLDYRP----GRDQGGLLAEALKIMLCDDRQHDMQKAAAFIKRLA 628

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TFSLCF SAESLAA  + +                   +  L +V    +        S 
Sbjct: 629 TFSLCFGSAESLAALVTVR-------------------HLLLKNVKCRNLLENDAGGGSV 688

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
           S S        +QPYA+DP LSGALASVLWEL+LLWKHYHPAVS M+  IS+MNSAQNQV
Sbjct: 689 SGSIAK-----YQPYATDPNLSGALASVLWELDLLWKHYHPAVSTMAAGISNMNSAQNQV 748

Query: 181 YIS--------------TESFNPKFNVRKVEKKKRAS----------------EVKEKLS 240
           YIS               ESFNP+FN RK+ K+KR S                EVKEKLS
Sbjct: 749 YISIVSPQQAFKDLSLEQESFNPQFNARKINKRKRGSESSQSTLDTCGTIDENEVKEKLS 808

Query: 241 TRFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQKRKTKRSR 254
           TRFFLLRDIKDNERLR ELDRTTLSLQ YEE+KRQKRKTK+SR
Sbjct: 809 TRFFLLRDIKDNERLRSELDRTTLSLQLYEEYKRQKRKTKKSR 823

[Close]

BLAST of CmoCh19G011270 vs. NCBI nr
Match: gi|590612725|ref|XP_007022463.1| (Nucleolar complex protein 3 isoform 3 [Theobroma cacao])

HSP 1 Score: 226.5 bits (576), Expect = 5.5e-56
Identity = 148/287 (51.57%), Postives = 173/287 (60.28%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYN+VLEYRP     RD GG+LAEALKIMLCD+RQH MQKAAAF KRLA
Sbjct: 421 LNVDLQDFFVQLYNLVLEYRP----GRDQGGVLAEALKIMLCDDRQHDMQKAAAFAKRLA 480

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TFSLCF SAES+AA  + K                   N    +V    +        S 
Sbjct: 481 TFSLCFGSAESMAALVTLK-------------------NLLQKNVKCRNLLENDAGGGSV 540

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
           S S        +QPYASDP LSGALASVLWELNLL KHYHP VS ++ SIS MN+AQNQV
Sbjct: 541 SGSIAK-----YQPYASDPNLSGALASVLWELNLLSKHYHPTVSTLAASISCMNTAQNQV 600

Query: 181 YIS-------------TESFNPKFNVRKVEKKKR-----------------ASEVKEKLS 240
           Y+S              ESF+PKF+ +K   K++                  +EV +KL 
Sbjct: 601 YLSITPQQAFINLSLEQESFDPKFSTQKSNNKRKRGTGPSTLASINPTSIDENEVSKKLG 660

Query: 241 TRFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQ----KRKTKRSR 254
             F LLRDIK+NERLRGELDRT  SLQ YEE+K+Q    K KTK+S+
Sbjct: 661 RHFMLLRDIKENERLRGELDRTRSSLQLYEEYKKQRKSLKHKTKKSK 679

[Close]

BLAST of CmoCh19G011270 vs. NCBI nr
Match: gi|590612722|ref|XP_007022462.1| (Binding isoform 2 [Theobroma cacao])

HSP 1 Score: 226.5 bits (576), Expect = 5.5e-56
Identity = 148/287 (51.57%), Postives = 173/287 (60.28%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYN+VLEYRP     RD GG+LAEALKIMLCD+RQH MQKAAAF KRLA
Sbjct: 390 LNVDLQDFFVQLYNLVLEYRP----GRDQGGVLAEALKIMLCDDRQHDMQKAAAFAKRLA 449

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TFSLCF SAES+AA  + K                   N    +V    +        S 
Sbjct: 450 TFSLCFGSAESMAALVTLK-------------------NLLQKNVKCRNLLENDAGGGSV 509

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
           S S        +QPYASDP LSGALASVLWELNLL KHYHP VS ++ SIS MN+AQNQV
Sbjct: 510 SGSIAK-----YQPYASDPNLSGALASVLWELNLLSKHYHPTVSTLAASISCMNTAQNQV 569

Query: 181 YIS-------------TESFNPKFNVRKVEKKKR-----------------ASEVKEKLS 240
           Y+S              ESF+PKF+ +K   K++                  +EV +KL 
Sbjct: 570 YLSITPQQAFINLSLEQESFDPKFSTQKSNNKRKRGTGPSTLASINPTSIDENEVSKKLG 629

Query: 241 TRFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQ----KRKTKRSR 254
             F LLRDIK+NERLRGELDRT  SLQ YEE+K+Q    K KTK+S+
Sbjct: 630 RHFMLLRDIKENERLRGELDRTRSSLQLYEEYKKQRKSLKHKTKKSK 648

[Close]

BLAST of CmoCh19G011270 vs. NCBI nr
Match: gi|590612718|ref|XP_007022461.1| (Nucleolar complex protein 3 isoform 1 [Theobroma cacao])

HSP 1 Score: 226.5 bits (576), Expect = 5.5e-56
Identity = 148/287 (51.57%), Postives = 173/287 (60.28%), Query Frame = 1


Query: 1   MNVDPQDFSVQLYNIVLEYRPVSFTHRDHGGLLAEALKIMLCDNRQHAMQKAAAFIKRLA 60
           +NVD QDF VQLYN+VLEYRP     RD GG+LAEALKIMLCD+RQH MQKAAAF KRLA
Sbjct: 570 LNVDLQDFFVQLYNLVLEYRP----GRDQGGVLAEALKIMLCDDRQHDMQKAAAFAKRLA 629

Query: 61  TFSLCFESAESLAASSSEKCQVPQPFGKRFLGRFSVWLNCALHDVYLSRISRTRENKKSP 120
           TFSLCF SAES+AA  + K                   N    +V    +        S 
Sbjct: 630 TFSLCFGSAESMAALVTLK-------------------NLLQKNVKCRNLLENDAGGGSV 689

Query: 121 SFSAMTCLERLFQPYASDPTLSGALASVLWELNLLWKHYHPAVSKMSTSISSMNSAQNQV 180
           S S        +QPYASDP LSGALASVLWELNLL KHYHP VS ++ SIS MN+AQNQV
Sbjct: 690 SGSIAK-----YQPYASDPNLSGALASVLWELNLLSKHYHPTVSTLAASISCMNTAQNQV 749

Query: 181 YIS-------------TESFNPKFNVRKVEKKKR-----------------ASEVKEKLS 240
           Y+S              ESF+PKF+ +K   K++                  +EV +KL 
Sbjct: 750 YLSITPQQAFINLSLEQESFDPKFSTQKSNNKRKRGTGPSTLASINPTSIDENEVSKKLG 809

Query: 241 TRFFLLRDIKDNERLRGELDRTTLSLQRYEEHKRQ----KRKTKRSR 254
             F LLRDIK+NERLRGELDRT  SLQ YEE+K+Q    K KTK+S+
Sbjct: 810 RHFMLLRDIKENERLRGELDRTRSSLQLYEEYKKQRKSLKHKTKKSK 828

The following BLAST results are available for this feature:

BLAST of CmoCh19G011270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G011270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7H5_CUCSA	1.0e-69	59.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238410 PE=4 SV=1	[more]
A0A061FAC6_THECC	3.8e-56	51.57	Nucleolar complex protein 3 isoform 1 OS=Theobroma cacao GN=TCM_032975 PE=4 SV=1	[more]
A0A061FB71_THECC	3.8e-56	51.57	Binding isoform 2 OS=Theobroma cacao GN=TCM_032975 PE=4 SV=1	[more]
A0A061FAQ4_THECC	3.8e-56	51.57	Nucleolar complex protein 3 isoform 3 OS=Theobroma cacao GN=TCM_032975 PE=4 SV=1	[more]
M5WM32_PRUPE	1.4e-53	48.97	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016725mg PE=4 S...	[more]

BLAST of CmoCh19G011270 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79150.1	2.1e-42	40.43	binding	[more]

BLAST of CmoCh19G011270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092555\|ref\|XP_008447119.1\|	2.1e-71	60.42	PREDICTED: nucleolar complex protein 3 homolog [Cucumis melo]	[more]
gi\|449444134\|ref\|XP_004139830.1\|	1.5e-69	59.36	PREDICTED: nucleolar complex protein 3 homolog [Cucumis sativus]	[more]
gi\|590612725\|ref\|XP_007022463.1\|	5.5e-56	51.57	Nucleolar complex protein 3 isoform 3 [Theobroma cacao]	[more]
gi\|590612722\|ref\|XP_007022462.1\|	5.5e-56	51.57	Binding isoform 2 [Theobroma cacao]	[more]
gi\|590612718\|ref\|XP_007022461.1\|	5.5e-56	51.57	Nucleolar complex protein 3 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005612	CCAAT-binding_factor

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044699	single-organism process
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0042991	transcription factor import into nucleus
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G011270.1	CmoCh19G011270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005612	CCAAT-binding factor	PFAM	PF03914	CBF	coord: 8..166 score: 1.5
None	No IPR available	unknown	Coil	Coil	coord: 222..242 scor
None	No IPR available	PANTHER	PTHR14428	NUCLEOLAR COMPLEX PROTEIN 3	coord: 1..255 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G011270	Cucsa.239720	Cucumber (Gy14) v1	cgycmoB0666
CmoCh19G011270	CmaCh11G019750	Cucurbita maxima (Rimu)	cmacmoB142
CmoCh19G011270	CmaCh19G010990	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G011270	Cla005500	Watermelon (97103) v1	cmowmB463
CmoCh19G011270	Csa7G238410	Cucumber (Chinese Long) v2	cmocuB520
CmoCh19G011270	MELO3C012616	Melon (DHL92) v3.5.1	cmomeB455
CmoCh19G011270	ClCG09G022650	Watermelon (Charleston Gray)	cmowcgB438
CmoCh19G011270	CSPI07G10830	Wild cucumber (PI 183967)	cmocpiB526
CmoCh19G011270	Lsi11G016090	Bottle gourd (USVL1VR-Ls)	cmolsiB459
CmoCh19G011270	Cp4.1LG15g09000	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G011270	MELO3C012616.2	Melon (DHL92) v3.6.1	cmomedB524
CmoCh19G011270	CsaV3_7G022820	Cucumber (Chinese Long) v3	cmocucB0624
CmoCh19G011270	Cla97C09G184210	Watermelon (97103) v2	cmowmbB528
CmoCh19G011270	Bhi05G001741	Wax gourd	cmowgoB0655
CmoCh19G011270	CsGy7G010190	Cucumber (Gy14) v2	cgybcmoB929
CmoCh19G011270	Carg15662	Silver-seed gourd	carcmoB0723

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G011270	Silver-seed gourd	carcmoB0463
CmoCh19G011270	Silver-seed gourd	carcmoB0532
CmoCh19G011270	Cucumber (Chinese Long) v3	cmocucB0618
CmoCh19G011270	Watermelon (97103) v2	cmowmbB508
CmoCh19G011270	Wax gourd	cmowgoB0664
CmoCh19G011270	Cucurbita moschata (Rifu)	cmocmoB108
CmoCh19G011270	Cucurbita moschata (Rifu)	cmocmoB380
CmoCh19G011270	Cucumber (Gy14) v1	cgycmoB0295
CmoCh19G011270	Cucurbita maxima (Rimu)	cmacmoB546
CmoCh19G011270	Cucurbita maxima (Rimu)	cmacmoB601
CmoCh19G011270	Wild cucumber (PI 183967)	cmocpiB521
CmoCh19G011270	Cucumber (Chinese Long) v2	cmocuB514
CmoCh19G011270	Melon (DHL92) v3.5.1	cmomeB444
CmoCh19G011270	Watermelon (Charleston Gray)	cmowcgB457
CmoCh19G011270	Watermelon (97103) v1	cmowmB493
CmoCh19G011270	Cucurbita pepo (Zucchini)	cmocpeB485
CmoCh19G011270	Cucurbita pepo (Zucchini)	cmocpeB492
CmoCh19G011270	Cucurbita pepo (Zucchini)	cmocpeB502
CmoCh19G011270	Bottle gourd (USVL1VR-Ls)	cmolsiB456
CmoCh19G011270	Cucumber (Gy14) v2	cgybcmoB762
CmoCh19G011270	Melon (DHL92) v3.6.1	cmomedB511