CmaCh19G010990 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G010990
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nucleolar complex-associated protein, putative
Location	Cma_Chr19 : 9109361 .. 9110289 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATGCAGAAGGCAGCTGCATTTATTAAGCGTTTGGCTACTTTCTCATTATGCTTTGAATCTGCAGAGTCGTTGGCAGGTATATTTAAATTCCTTTTAGTTTTGATGACTTTTATTTAACCGTGAATGTGTGTGGCTATTTACTGCCTCGGTCACCGTAAAGCATCTTCTTCAGAAAAATGTCAAGTGCCGCAACCTTTTGGAAAACGATTCTTGGGGAGGTTCAGTGTCTGGCTCAATTGCGGTAAGGTTTCATTGTAACTAGTTGAGATATATGACAGCTTTGCATGATGTTTATCTCTCCCGTATTTCACGAACACGAGAAAACAAAAAATCACCAAGCATTTCTACTATGACATGTTTAGAACGACTTTTCAAGTGAAAAAAAAAGTATTATAAGCACTTAGAAAGTTGATGAAATTAGGCGATTTCGTAACGTCCCGTGAAATTGAGCTTATTGATTCAATATCAGACATCCTTCTTCCCACCTCAACCTACTCATAGGAGGAAAGAGAAACTAATTTTTGCTGATTTGATATGCAGAAATACGAGCCATATGCTTCTGATCCAACTTTGAGCTGTGCTCTTGCTTCTGTCCTTTGGGAACTTAATCTTCTGTGGAAGCATTATCATCCAGCTGTCTCAACGATGTCAACGAGCATATCAAGCATGAATAGTGCTCAAAACCAAGTGTACATCGCCACGGTTTCTCCCCAACAGGCATTCAAAGACTTGTCGCTGGAATAGGAGTCTTTCAACCCACAATTTAATGTCCGAAAAGTTAAAAAGAAAAAAAGAGCTAGCGAAGTGAAGGAGAAACTTTCAACAAGATTCTTTCTTCTCGGGACATCAAGGACAATGAAAGGCTGAGAGGTGAATTGGACCGTACCACTTTGTCTTTGCAGCTGTATGAAGAACACAAAAGGC

mRNA sequence

ATGCCATGCAGAAGGCAGCTGCATTTATTAAGCGTTTGGCTACTTTCTCATTATGCTTTGAATCTGCAGAGTCGTTGGCAGAAAAATGTCAAGTGCCGCAACCTTTTGGAAAACGATTCTTGGGGAGGTTCAGTGTCTGGCTCAATTGCGAAATACGAGCCATATGCTTCTGATCCAACTTTGAGCTGTGCTCTTGCTTCTGTCCTTTGGGAACTTAATCTTCTGTGGAAGCATTATCATCCAGCTGTCTCAACGATGTCAACGAGCATATCAAGCATGAATAGTGCTCAAAACCAAGTGTACATCGCCACGGTTTCTCCCCAACAGGCATTCAAAGACTTGTCGCTGGAATAGGAGTCTTTCAACCCACAATTTAATGTCCGAAAAGTTAAAAAGAAAAAAAGAGCTAGCGAAGTGAAGGAGAAACTTTCAACAAGATTCTTTCTTCTCGGGACATCAAGGACAATGAAAGGCTGAGAGGTGAATTGGACCGTACCACTTTGTCTTTGCAGCTGTATGAAGAACACAAAAGGC

Coding sequence (CDS)

ATGCCATGCAGAAGGCAGCTGCATTTATTAAGCGTTTGGCTACTTTCTCATTATGCTTTGAATCTGCAGAGTCGTTGGCAGAAAAATGTCAAGTGCCGCAACCTTTTGGAAAACGATTCTTGGGGAGGTTCAGTGTCTGGCTCAATTGCGAAATACGAGCCATATGCTTCTGATCCAACTTTGAGCTGTGCTCTTGCTTCTGTCCTTTGGGAACTTAATCTTCTGTGGAAGCATTATCATCCAGCTGTCTCAACGATGTCAACGAGCATATCAAGCATGAATAGTGCTCAAAACCAAGTGTACATCGCCACGGTTTCTCCCCAACAGGCATTCAAAGACTTGTCGCTGGAATAG

Protein sequence

MPCRRQLHLLSVWLLSHYALNLQSRWQKNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHYHPAVSTMSTSISSMNSAQNQVYIATVSPQQAFKDLSLE

Homology

[Close]

BLAST of CmaCh19G010990 vs. TrEMBL
Match: A0A0A0K7H5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238410 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 9.7e-36
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 28  KNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHYHPAVSTMS 87
           KNVKCRNLLEND+ GGSVSGSIAKY+PYA+DP LS ALASVLWEL+LLWKHYHPAVSTM+
Sbjct: 648 KNVKCRNLLENDAGGGSVSGSIAKYQPYATDPNLSGALASVLWELDLLWKHYHPAVSTMA 707

Query: 88  TSISSMNSAQNQVYIATVSPQQAFKDLSLE 118
             IS+MNSAQNQVYI+ VSPQQAFKDLSLE
Sbjct: 708 AGISNMNSAQNQVYISIVSPQQAFKDLSLE 737

[Close]

BLAST of CmaCh19G010990 vs. TrEMBL
Match: A0A067JYL3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22625 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.0e-34
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 1


Query: 27  QKNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHYHPAVSTM 86
           QKNVKCRNLLEND+ GGSVSGSIAKYEPYASDP LS ALASVLWELNLL K+YHPAVSTM
Sbjct: 652 QKNVKCRNLLENDAGGGSVSGSIAKYEPYASDPNLSGALASVLWELNLLSKYYHPAVSTM 711

Query: 87  STSISSMNSAQNQVYIATVSPQQAFKDLSLE 118
           ++SISSM+SA NQV++++VSPQQAF DLSLE
Sbjct: 712 ASSISSMSSAHNQVFLSSVSPQQAFADLSLE 742

[Close]

BLAST of CmaCh19G010990 vs. TrEMBL
Match: M5WM32_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016725mg PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.5e-33
Identity = 72/90 (80.00%), Postives = 82/90 (91.11%), Query Frame = 1


Query: 28  KNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHYHPAVSTMS 87
           KNVKCRNLLEND+ GGSVSGS+AKY PYASDP LS ALASVLWELNLL +HYHPAVS+M+
Sbjct: 649 KNVKCRNLLENDAGGGSVSGSVAKYHPYASDPNLSGALASVLWELNLLTQHYHPAVSSMA 708

Query: 88  TSISSMNSAQNQVYIATVSPQQAFKDLSLE 118
           +SISSMN+A NQVY++T+SPQQAF D SLE
Sbjct: 709 SSISSMNTAHNQVYLSTISPQQAFTDFSLE 738

[Close]

BLAST of CmaCh19G010990 vs. TrEMBL
Match: A0A0D2W607_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141600 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-32
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 20  LNLQSRWQKNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHY 79
           + L+   Q+NVKCRNLLEND+ GGSVSGSIAKY+PY SDP+LS ALASVLWELNLL KHY
Sbjct: 367 VTLKQLLQRNVKCRNLLENDAGGGSVSGSIAKYQPYGSDPSLSGALASVLWELNLLSKHY 426

Query: 80  HPAVSTMSTSISSMNSAQNQVYIATVSPQQAFKDLSLE 118
           HPA+ST+++ ISSMNSAQNQVYI ++SPQQAFK+L LE
Sbjct: 427 HPAISTLASGISSMNSAQNQVYI-SISPQQAFKNLLLE 463

[Close]

BLAST of CmaCh19G010990 vs. TrEMBL
Match: A0A0D2VF85_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141600 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-32
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 20  LNLQSRWQKNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHY 79
           + L+   Q+NVKCRNLLEND+ GGSVSGSIAKY+PY SDP+LS ALASVLWELNLL KHY
Sbjct: 642 VTLKQLLQRNVKCRNLLENDAGGGSVSGSIAKYQPYGSDPSLSGALASVLWELNLLSKHY 701

Query: 80  HPAVSTMSTSISSMNSAQNQVYIATVSPQQAFKDLSLE 118
           HPA+ST+++ ISSMNSAQNQVYI ++SPQQAFK+L LE
Sbjct: 702 HPAISTLASGISSMNSAQNQVYI-SISPQQAFKNLLLE 738

[Close]

BLAST of CmaCh19G010990 vs. TAIR10
Match: AT1G79150.1 (AT1G79150.1 binding)

HSP 1 Score: 141.0 bits (354), Expect = 4.8e-34
Identity = 66/97 (68.04%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 20  LNLQSRWQKNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHY 79
           + L++  QKNVKCRNLLEND+ GGSVSGSIAKY+PYA+DP LS ALA+VLWEL+LL KHY
Sbjct: 643 VTLKTLLQKNVKCRNLLENDAGGGSVSGSIAKYQPYATDPNLSGALATVLWELSLLSKHY 702

Query: 80  HPAVSTMSTSISSMNSAQNQVYIATVSPQQAFKDLSL 117
           HPA+STM+T++S+MN++Q+Q +++ V+PQQAF D SL
Sbjct: 703 HPAISTMATTVSNMNTSQSQTFLSAVTPQQAFADFSL 739

[Close]

BLAST of CmaCh19G010990 vs. NCBI nr
Match: gi|659092555|ref|XP_008447119.1| (PREDICTED: nucleolar complex protein 3 homolog [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-36
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 28  KNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHYHPAVSTMS 87
           KNVKCRNLLEND+ GGSVSGSIAKY+PYA+DP LS ALASVLWEL+LLWKHYHPAVS M+
Sbjct: 649 KNVKCRNLLENDAGGGSVSGSIAKYQPYATDPNLSGALASVLWELDLLWKHYHPAVSKMA 708

Query: 88  TSISSMNSAQNQVYIATVSPQQAFKDLSLE 118
            SIS+MNSAQNQVYI+TVSPQQAFKDLSLE
Sbjct: 709 ASISNMNSAQNQVYISTVSPQQAFKDLSLE 738

[Close]

BLAST of CmaCh19G010990 vs. NCBI nr
Match: gi|449444134|ref|XP_004139830.1| (PREDICTED: nucleolar complex protein 3 homolog [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-35
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 28  KNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHYHPAVSTMS 87
           KNVKCRNLLEND+ GGSVSGSIAKY+PYA+DP LS ALASVLWEL+LLWKHYHPAVSTM+
Sbjct: 648 KNVKCRNLLENDAGGGSVSGSIAKYQPYATDPNLSGALASVLWELDLLWKHYHPAVSTMA 707

Query: 88  TSISSMNSAQNQVYIATVSPQQAFKDLSLE 118
             IS+MNSAQNQVYI+ VSPQQAFKDLSLE
Sbjct: 708 AGISNMNSAQNQVYISIVSPQQAFKDLSLE 737

[Close]

BLAST of CmaCh19G010990 vs. NCBI nr
Match: gi|802742780|ref|XP_012087379.1| (PREDICTED: nucleolar complex protein 3 homolog isoform X2 [Jatropha curcas])

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-33
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 1


Query: 27  QKNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHYHPAVSTM 86
           QKNVKCRNLLEND+ GGSVSGSIAKYEPYASDP LS ALASVLWELNLL K+YHPAVSTM
Sbjct: 652 QKNVKCRNLLENDAGGGSVSGSIAKYEPYASDPNLSGALASVLWELNLLSKYYHPAVSTM 711

Query: 87  STSISSMNSAQNQVYIATVSPQQAFKDLSLE 118
           ++SISSM+SA NQV++++VSPQQAF DLSLE
Sbjct: 712 ASSISSMSSAHNQVFLSSVSPQQAFADLSLE 742

[Close]

BLAST of CmaCh19G010990 vs. NCBI nr
Match: gi|802742761|ref|XP_012087378.1| (PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas])

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-33
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 1


Query: 27  QKNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHYHPAVSTM 86
           QKNVKCRNLLEND+ GGSVSGSIAKYEPYASDP LS ALASVLWELNLL K+YHPAVSTM
Sbjct: 653 QKNVKCRNLLENDAGGGSVSGSIAKYEPYASDPNLSGALASVLWELNLLSKYYHPAVSTM 712

Query: 87  STSISSMNSAQNQVYIATVSPQQAFKDLSLE 118
           ++SISSM+SA NQV++++VSPQQAF DLSLE
Sbjct: 713 ASSISSMSSAHNQVFLSSVSPQQAFADLSLE 743

[Close]

BLAST of CmaCh19G010990 vs. NCBI nr
Match: gi|595892340|ref|XP_007213560.1| (hypothetical protein PRUPE_ppa016725mg, partial [Prunus persica])

HSP 1 Score: 148.7 bits (374), Expect = 6.5e-33
Identity = 72/90 (80.00%), Postives = 82/90 (91.11%), Query Frame = 1


Query: 28  KNVKCRNLLENDSWGGSVSGSIAKYEPYASDPTLSCALASVLWELNLLWKHYHPAVSTMS 87
           KNVKCRNLLEND+ GGSVSGS+AKY PYASDP LS ALASVLWELNLL +HYHPAVS+M+
Sbjct: 649 KNVKCRNLLENDAGGGSVSGSVAKYHPYASDPNLSGALASVLWELNLLTQHYHPAVSSMA 708

Query: 88  TSISSMNSAQNQVYIATVSPQQAFKDLSLE 118
           +SISSMN+A NQVY++T+SPQQAF D SLE
Sbjct: 709 SSISSMNTAHNQVYLSTISPQQAFTDFSLE 738

The following BLAST results are available for this feature:

BLAST of CmaCh19G010990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh19G010990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7H5_CUCSA	9.7e-36	85.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238410 PE=4 SV=1	[more]
A0A067JYL3_JATCU	7.0e-34	83.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22625 PE=4 SV=1	[more]
M5WM32_PRUPE	4.5e-33	80.00	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016725mg PE=4 S...	[more]
A0A0D2W607_GOSRA	1.7e-32	75.51	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141600 PE=4 SV=1	[more]
A0A0D2VF85_GOSRA	1.7e-32	75.51	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G141600 PE=4 SV=1	[more]

BLAST of CmaCh19G010990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79150.1	4.8e-34	68.04	binding	[more]

BLAST of CmaCh19G010990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092555\|ref\|XP_008447119.1\|	4.8e-36	86.67	PREDICTED: nucleolar complex protein 3 homolog [Cucumis melo]	[more]
gi\|449444134\|ref\|XP_004139830.1\|	1.4e-35	85.56	PREDICTED: nucleolar complex protein 3 homolog [Cucumis sativus]	[more]
gi\|802742780\|ref\|XP_012087379.1\|	1.0e-33	83.52	PREDICTED: nucleolar complex protein 3 homolog isoform X2 [Jatropha curcas]	[more]
gi\|802742761\|ref\|XP_012087378.1\|	1.0e-33	83.52	PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]	[more]
gi\|595892340\|ref\|XP_007213560.1\|	6.5e-33	80.00	hypothetical protein PRUPE_ppa016725mg, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005612	CCAAT-binding_factor

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0042991	transcription factor import into nucleus
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G010990.1	CmaCh19G010990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005612	CCAAT-binding factor	PFAM	PF03914	CBF	coord: 24..86 score: 2.5
None	No IPR available	PANTHER	PTHR14428	NUCLEOLAR COMPLEX PROTEIN 3	coord: 27..117 score: 1.0
None	No IPR available	PANTHER	PTHR14428:SF5	NUCLEOLAR COMPLEX PROTEIN 3 HOMOLOG	coord: 27..117 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G010990	Cucsa.239720	Cucumber (Gy14) v1	cgycmaB0667
CmaCh19G010990	Cla005500	Watermelon (97103) v1	cmawmB470
CmaCh19G010990	Csa7G238410	Cucumber (Chinese Long) v2	cmacuB529
CmaCh19G010990	MELO3C012616	Melon (DHL92) v3.5.1	cmameB464
CmaCh19G010990	ClCG09G022650	Watermelon (Charleston Gray)	cmawcgB439
CmaCh19G010990	CSPI07G10830	Wild cucumber (PI 183967)	cmacpiB535
CmaCh19G010990	CmoCh19G011270	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G010990	Lsi11G016090	Bottle gourd (USVL1VR-Ls)	cmalsiB474
CmaCh19G010990	Cp4.1LG15g09000	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G010990	MELO3C012616.2	Melon (DHL92) v3.6.1	cmamedB537
CmaCh19G010990	CsaV3_7G022820	Cucumber (Chinese Long) v3	cmacucB0640
CmaCh19G010990	Cla97C09G184210	Watermelon (97103) v2	cmawmbB547
CmaCh19G010990	Bhi05G001741	Wax gourd	cmawgoB0654
CmaCh19G010990	CsGy7G010190	Cucumber (Gy14) v2	cgybcmaB946
CmaCh19G010990	Carg15662	Silver-seed gourd	carcmaB0745

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G010990	Wax gourd	cmawgoB0666
CmaCh19G010990	Cucurbita maxima (Rimu)	cmacmaB148
CmaCh19G010990	Cucurbita maxima (Rimu)	cmacmaB442
CmaCh19G010990	Cucurbita maxima (Rimu)	cmacmaB454
CmaCh19G010990	Cucumber (Gy14) v1	cgycmaB0298
CmaCh19G010990	Cucurbita moschata (Rifu)	cmacmoB492
CmaCh19G010990	Cucurbita moschata (Rifu)	cmacmoB514
CmaCh19G010990	Wild cucumber (PI 183967)	cmacpiB528
CmaCh19G010990	Cucumber (Chinese Long) v2	cmacuB522
CmaCh19G010990	Melon (DHL92) v3.5.1	cmameB452
CmaCh19G010990	Watermelon (Charleston Gray)	cmawcgB458
CmaCh19G010990	Watermelon (97103) v1	cmawmB500
CmaCh19G010990	Cucurbita pepo (Zucchini)	cmacpeB527
CmaCh19G010990	Cucurbita pepo (Zucchini)	cmacpeB537
CmaCh19G010990	Cucurbita pepo (Zucchini)	cmacpeB546
CmaCh19G010990	Bottle gourd (USVL1VR-Ls)	cmalsiB471
CmaCh19G010990	Cucumber (Gy14) v2	cgybcmaB783
CmaCh19G010990	Melon (DHL92) v3.6.1	cmamedB522
CmaCh19G010990	Silver-seed gourd	carcmaB0471
CmaCh19G010990	Silver-seed gourd	carcmaB0547
CmaCh19G010990	Cucumber (Chinese Long) v3	cmacucB0633
CmaCh19G010990	Watermelon (97103) v2	cmawmbB528