CmoCh19G009800 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G009800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr19 : 8819438 .. 8820497 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTTAGGTGTAAAATAGTGGTGGAGGCGGCAAGCTTTGCGGCTAATTCAAGGTAAAGGAGGACCATCAAATCAAATTAGGGAGAGAAGGAAACGGTAAGCTGTTCTAAATTCTTTTGGTTCTTGTTGATCTGTGGACTAGATTTTTGTTTGGTTAGGGAATAATTAAAGTTAATTACGTGTGTTAGTGATGAATTTTGTTTGCCGACAGGAATCAAATTCCAATTTCTTCTTCCTTCACCGATTGTTTTATTATTCCCTCTTAATTTGTCCTTAATTCTTGTCTCCTTTTCTGTAATTTTTAACGGAATTAGTTTCCAGAAAATATGATTAGAAATTTGTGGCCGTCGATTTTTGCTCTTAAATCATGGCTGAAAGCGTAGGGTTATCGTTCATGTACTGTCAGTCGAGCGTTGATTGCGACAATATAAACCTAAGGGGGCCTTCATTTTCATTGCCTGAATAAACAGGAGAAGGGCCTTCTTTCTCTTCCATGAGATTGAAGTTTCTTTCATGATTATGTTGGGTCAGAAAGGTTAGATCATCAATTCTTCCATTTCTTTCATGATTTTGTTGGATTGTAACTCTTCGTTTAAGCTGAATCGCCGCGATAGAAGTTGCAGAAATCTTGTTGTTGTTATTGCCTGAATTGTGAAATCGGATTTGGAAAGATAATCATTTCCATGTTGCTGAAATCTTGTTGTTGTTATTGCCTGAATTGTTATATCGGATTTGGAAAGATAATCATTTCCCGTATCATCTTTGGATTGTTCTATATGTGGATGGTTGTTCATATCATGTATGAATCTGTATTTATGTGTTCTTCTGGTTGTTTATCAGGTCTGCATCTCTTCTACATGTATTGGTTCAGGTTCCCTTAGTGGGCAAAAAAATTCTCTTCACTCTGGCAGCTGCAACTAGCTCAAATTCTTCTCGCACCTTCAAATGGGTGTGGGATAATGGAGTGATATCTCTTGGTGTTTTGAGGAAGTCAAGATCATCATACATTTGGAGATTGTGTCGTGTTTTAGAGGGTCTGTCGCTTGATTATGGTTAA

mRNA sequence

ATGAATTTTAGGTGTAAAATAGTGGTGGAGGCGGCAAGCTTTGCGGCTAATTCAAGGTCTGCATCTCTTCTACATGTATTGGTTCAGGTTCCCTTAGTGGGCAAAAAAATTCTCTTCACTCTGGCAGCTGCAACTAGCTCAAATTCTTCTCGCACCTTCAAATGGGTGTGGGATAATGGAGTGATATCTCTTGGTGTTTTGAGGAAGTCAAGATCATCATACATTTGGAGATTGTGTCGTGTTTTAGAGGGTCTGTCGCTTGATTATGGTTAA

Coding sequence (CDS)

ATGAATTTTAGGTGTAAAATAGTGGTGGAGGCGGCAAGCTTTGCGGCTAATTCAAGGTCTGCATCTCTTCTACATGTATTGGTTCAGGTTCCCTTAGTGGGCAAAAAAATTCTCTTCACTCTGGCAGCTGCAACTAGCTCAAATTCTTCTCGCACCTTCAAATGGGTGTGGGATAATGGAGTGATATCTCTTGGTGTTTTGAGGAAGTCAAGATCATCATACATTTGGAGATTGTGTCGTGTTTTAGAGGGTCTGTCGCTTGATTATGGTTAA
Homology
[Close]
BLAST of CmoCh19G009800 vs. TrEMBL
Match: A0A0A0K3N3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045530 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-23
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 1 

Query: 22 SLLHVLVQ-VPLVGKKILFTLAAATSSNSSRTFKWVWDNGVISLGVLRKSRSSYIWRLCR 81
          SLLHV +  V LV KK  FTLAAATSS SSRTFKWVWDNGVISLGVLRKSRSS+IWRLCR
Sbjct: 11 SLLHVCIGLVSLVVKKTPFTLAAATSSKSSRTFKWVWDNGVISLGVLRKSRSSHIWRLCR 70

Query: 82 VLEGLSLDYG 91
          VLEGLSLDYG
Sbjct: 71 VLEGLSLDYG 80

[Close]
BLAST of CmoCh19G009800 vs. NCBI nr
Match: gi|700188331|gb|KGN43564.1| (hypothetical protein Csa_7G045530 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 8.0e-23
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 1 

Query: 22 SLLHVLVQ-VPLVGKKILFTLAAATSSNSSRTFKWVWDNGVISLGVLRKSRSSYIWRLCR 81
          SLLHV +  V LV KK  FTLAAATSS SSRTFKWVWDNGVISLGVLRKSRSS+IWRLCR
Sbjct: 11 SLLHVCIGLVSLVVKKTPFTLAAATSSKSSRTFKWVWDNGVISLGVLRKSRSSHIWRLCR 70

Query: 82 VLEGLSLDYG 91
          VLEGLSLDYG
Sbjct: 71 VLEGLSLDYG 80

The following BLAST results are available for this feature:
BLAST of CmoCh19G009800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh19G009800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3N3_CUCSA5.6e-2385.71Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045530 PE=4 SV=1[more]
BLAST of CmoCh19G009800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh19G009800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188331|gb|KGN43564.1|8.0e-2385.71hypothetical protein Csa_7G045530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G009800.1CmoCh19G009800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G009800CmaCh19G009490Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G009800Csa7G045530Cucumber (Chinese Long) v2cmocuB518
CmoCh19G009800CSPI07G04110Wild cucumber (PI 183967)cmocpiB524
CmoCh19G009800CsaV3_7G003970Cucumber (Chinese Long) v3cmocucB0622
CmoCh19G009800Cla97C02G027930Watermelon (97103) v2cmowmbB512
CmoCh19G009800CsGy7G003750Cucumber (Gy14) v2cgybcmoB927
CmoCh19G009800Carg19201Silver-seed gourdcarcmoB1183
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G009800Cucurbita moschata (Rifu)cmocmoB108
CmoCh19G009800Cucurbita moschata (Rifu)cmocmoB177
CmoCh19G009800Cucurbita moschata (Rifu)cmocmoB381
CmoCh19G009800Cucurbita moschata (Rifu)cmocmoB389
CmoCh19G009800Cucurbita moschata (Rifu)cmocmoB394
CmoCh19G009800Cucurbita moschata (Rifu)cmocmoB400
CmoCh19G009800Cucumber (Gy14) v1cgycmoB0036
CmoCh19G009800Cucumber (Gy14) v1cgycmoB0407
CmoCh19G009800Cucurbita maxima (Rimu)cmacmoB142
CmoCh19G009800Cucurbita maxima (Rimu)cmacmoB547
CmoCh19G009800Cucurbita maxima (Rimu)cmacmoB600
CmoCh19G009800Cucurbita maxima (Rimu)cmacmoB854
CmoCh19G009800Wild cucumber (PI 183967)cmocpiB498
CmoCh19G009800Wild cucumber (PI 183967)cmocpiB517
CmoCh19G009800Cucumber (Chinese Long) v2cmocuB491
CmoCh19G009800Melon (DHL92) v3.5.1cmomeB452
CmoCh19G009800Melon (DHL92) v3.5.1cmomeB476
CmoCh19G009800Watermelon (Charleston Gray)cmowcgB456
CmoCh19G009800Watermelon (Charleston Gray)cmowcgB459
CmoCh19G009800Watermelon (97103) v1cmowmB491
CmoCh19G009800Watermelon (97103) v1cmowmB492
CmoCh19G009800Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G009800Cucurbita pepo (Zucchini)cmocpeB483
CmoCh19G009800Cucurbita pepo (Zucchini)cmocpeB492
CmoCh19G009800Cucurbita pepo (Zucchini)cmocpeB500
CmoCh19G009800Bottle gourd (USVL1VR-Ls)cmolsiB453
CmoCh19G009800Bottle gourd (USVL1VR-Ls)cmolsiB457
CmoCh19G009800Bottle gourd (USVL1VR-Ls)cmolsiB462
CmoCh19G009800Melon (DHL92) v3.6.1cmomedB521
CmoCh19G009800Melon (DHL92) v3.6.1cmomedB552
CmoCh19G009800Silver-seed gourdcarcmoB0040
CmoCh19G009800Silver-seed gourdcarcmoB0884
CmoCh19G009800Silver-seed gourdcarcmoB0981
CmoCh19G009800Cucumber (Chinese Long) v3cmocucB0588
CmoCh19G009800Cucumber (Chinese Long) v3cmocucB0614
CmoCh19G009800Watermelon (97103) v2cmowmbB501
CmoCh19G009800Watermelon (97103) v2cmowmbB510
CmoCh19G009800Watermelon (97103) v2cmowmbB513
CmoCh19G009800Wax gourdcmowgoB0643
CmoCh19G009800Wax gourdcmowgoB0664
CmoCh19G009800Wax gourdcmowgoB0667