CmoCh19G009070 (gene) Cucurbita moschata (Rifu)

NameCmoCh19G009070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTED3
LocationCmo_Chr19 : 8518673 .. 8519806 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATGGCCGCTTCAATTACGTTCAAGCATCTCCCCTTCATTTTTCTCATCCTCTCCTCTGTTCAAATCGAAGCCAGAGTCAATAAATTCTTCAGCAAATTTATCCACACTGATCGCGATGTTGTTCTTCCCGTAGCCTTTTCCCCGGCGCCGGTCTCTGTTCCGCCTGAGATATCTCCATCTCTGGCGCCAACGCCAGCTCCCGCACCGTTTTTCGACGAATCGCAGAATGCTTACGGTCTGTACGGCAGTGATGCAGACAACAGCGAAGGTAGCCGGACGATCACCGACGTGGAAGAGGAGATTCTCGCGGAGGACGGTGAGGACGAGGAGAGCCACAAATCTGGCTATCAGACGAATTTACACACTGACAATTTCGAAAGCCCTAAAAGATCTGAGAGCAATAACGACGGGAACAGTGGATATAGAAATTCCGAGTACGAGAGCAACAATGATCACAGAAATTCCGAGTACGAGAACAACAATGAACACAGAAATTCCGAGTACGAGAACAACAACGAATACAGAAATTCCGAGTACGAGAACAACAACGAACACAGAACTTCCGAGGACGAGAACAACAACGAACACAGAAATTCCGAGTACGAGAACAATAACGAACACAGAACTTCCGAGGACGAGAACAACAATGAACACAGAAATTCCGAGTACGAGAACAACAACGAACACAGAACTTCCGAGGACGAGAACAACAATGAACACAGAAATTCCGAGTACGAGAACAACAATGAACACAAAAATTCTGAGTACGAGAACAACAACGAACACAGAAATTCCGAGTACGAGAACAACAATGAGTACAGAAATTCCGAGTACGAGAACAACAATAATGAATACAGAAATACCGAATACAAGAGCGATTTCGAGAACAATGGCGTCAGAAATTACCAGTACCAGAGCAATGTCGAGGGCGATGGCTACAGAAAGAGGCGATACGAACCGACGGAGCAGCAAGGGATGAGCGACACCAGATTCATGGAGAACGGAAGGTACTATCACGAAATTAACTCAGGAATCGGAGAAGAAAACAAATCGTACGGAAGTAAGAAGTATCCGAACGAGTTCGATTCCATGGAGGAGTACGAGAAGAGTGAGGGATTTCTTCCTTGA

mRNA sequence

ATGGCTATGGCCGCTTCAATTACGTTCAAGCATCTCCCCTTCATTTTTCTCATCCTCTCCTCTGTTCAAATCGAAGCCAGAGTCAATAAATTCTTCAGCAAATTTATCCACACTGATCGCGATGTTGTTCTTCCCGTAGCCTTTTCCCCGGCGCCGGTCTCTGTTCCGCCTGAGATATCTCCATCTCTGGCGCCAACGCCAGCTCCCGCACCGTTTTTCGACGAATCGCAGAATGCTTACGGTCTGTACGGCAGTGATGCAGACAACAGCGAAGGTAGCCGGACGATCACCGACGTGGAAGAGGAGATTCTCGCGGAGGACGGTGAGGACGAGGAGAGCCACAAATCTGGCTATCAGACGAATTTACACACTGACAATTTCGAAAGCCCTAAAAGATCTGAGAGCAATAACGACGGGAACAGTGGATATAGAAATTCCGAGTACGAGAGCAACAATGATCACAGAAATTCCGAGTACGAGAACAACAATGAACACAGAAATTCCGAGTACGAGAACAACAACGAATACAGAAATTCCGAGTACGAGAACAACAACGAACACAGAACTTCCGAGGACGAGAACAACAACGAACACAGAAATTCCGAGTACGAGAACAATAACGAACACAGAACTTCCGAGGACGAGAACAACAATGAACACAGAAATTCCGAGTACGAGAACAACAACGAACACAGAACTTCCGAGGACGAGAACAACAATGAACACAGAAATTCCGAGTACGAGAACAACAATGAACACAAAAATTCTGAGTACGAGAACAACAACGAACACAGAAATTCCGAGTACGAGAACAACAATGAGTACAGAAATTCCGAGTACGAGAACAACAATAATGAATACAGAAATACCGAATACAAGAGCGATTTCGAGAACAATGGCGTCAGAAATTACCAGTACCAGAGCAATGTCGAGGGCGATGGCTACAGAAAGAGGCGATACGAACCGACGGAGCAGCAAGGGATGAGCGACACCAGATTCATGGAGAACGGAAGGTACTATCACGAAATTAACTCAGGAATCGGAGAAGAAAACAAATCGTACGGAAGTAAGAAGTATCCGAACGAGTTCGATTCCATGGAGGAGTACGAGAAGAGTGAGGGATTTCTTCCTTGA

Coding sequence (CDS)

ATGGCTATGGCCGCTTCAATTACGTTCAAGCATCTCCCCTTCATTTTTCTCATCCTCTCCTCTGTTCAAATCGAAGCCAGAGTCAATAAATTCTTCAGCAAATTTATCCACACTGATCGCGATGTTGTTCTTCCCGTAGCCTTTTCCCCGGCGCCGGTCTCTGTTCCGCCTGAGATATCTCCATCTCTGGCGCCAACGCCAGCTCCCGCACCGTTTTTCGACGAATCGCAGAATGCTTACGGTCTGTACGGCAGTGATGCAGACAACAGCGAAGGTAGCCGGACGATCACCGACGTGGAAGAGGAGATTCTCGCGGAGGACGGTGAGGACGAGGAGAGCCACAAATCTGGCTATCAGACGAATTTACACACTGACAATTTCGAAAGCCCTAAAAGATCTGAGAGCAATAACGACGGGAACAGTGGATATAGAAATTCCGAGTACGAGAGCAACAATGATCACAGAAATTCCGAGTACGAGAACAACAATGAACACAGAAATTCCGAGTACGAGAACAACAACGAATACAGAAATTCCGAGTACGAGAACAACAACGAACACAGAACTTCCGAGGACGAGAACAACAACGAACACAGAAATTCCGAGTACGAGAACAATAACGAACACAGAACTTCCGAGGACGAGAACAACAATGAACACAGAAATTCCGAGTACGAGAACAACAACGAACACAGAACTTCCGAGGACGAGAACAACAATGAACACAGAAATTCCGAGTACGAGAACAACAATGAACACAAAAATTCTGAGTACGAGAACAACAACGAACACAGAAATTCCGAGTACGAGAACAACAATGAGTACAGAAATTCCGAGTACGAGAACAACAATAATGAATACAGAAATACCGAATACAAGAGCGATTTCGAGAACAATGGCGTCAGAAATTACCAGTACCAGAGCAATGTCGAGGGCGATGGCTACAGAAAGAGGCGATACGAACCGACGGAGCAGCAAGGGATGAGCGACACCAGATTCATGGAGAACGGAAGGTACTATCACGAAATTAACTCAGGAATCGGAGAAGAAAACAAATCGTACGGAAGTAAGAAGTATCCGAACGAGTTCGATTCCATGGAGGAGTACGAGAAGAGTGAGGGATTTCTTCCTTGA
BLAST of CmoCh19G009070 vs. TrEMBL
Match: A0A0A0K1D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G038700 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 138/278 (49.64%), Postives = 169/278 (60.79%), Query Frame = 1

Query: 2   AMAASITFK--HLPFIF-----LILSSVQIEARVNKFFSKFIHTDRDVVLPVAFSPAPVS 61
           A +AS TFK  HL F F     L++SSVQIEARVNKFFSKFIHTD +VV P   SPAP+S
Sbjct: 3   AASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVV-PNTLSPAPLS 62

Query: 62  VPPEISPSLAPTPAPAPFFDESQNAYGLYGSDADNSEGSRTITDVEEEILAEDG-EDEES 121
           VPPE SPSLAPTPAPAPFFDESQNAYGLYGSD D  E +RTITDVEEEIL  +G +DE +
Sbjct: 63  VPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEGN 122

Query: 122 HKSGYQTNLHTDNFESPKRSESNNDGNSGYRNSEYESNNDHRNSEYENNNEHRNSEYENN 181
            KSG+  N    NF   +  E        Y+N  YE+NN  RNSEY+N NE+RNSEYEN 
Sbjct: 123 DKSGFPMN----NFVETRNEEEQ------YQNKNYENNNGFRNSEYDNRNEYRNSEYEN- 182

Query: 182 NEYRNSEYENNNEHRTSEDENNNE---HRNSEYENNNEHRTSEDENNNEHRNSEYENNNE 241
                    NNNE R  ED+ N E   +R S +E       +E E  ++ R  E    N 
Sbjct: 183 ---------NNNEGRNYEDQRNFEEGGYRRSRFE------PTEQEGMSDTRFME----NG 242

Query: 242 HRTSEDENNNEHRNSEYENNNEHKNSEYENNNEHRNSE 269
               +  + N+  N  Y +  ++   E+++  E+  SE
Sbjct: 243 RYFHDINSRNDEENGSYGSKKKYPKYEFDSMEEYERSE 249

BLAST of CmoCh19G009070 vs. NCBI nr
Match: gi|659110946|ref|XP_008455495.1| (PREDICTED: protein E6-like [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 2.5e-33
Identity = 124/244 (50.82%), Postives = 159/244 (65.16%), Query Frame = 1

Query: 2   AMAASITFK--HLPFIFLIL-SSVQIEARVNKFFSKFIHTDRDVVLPVAFSPAPVSVPPE 61
           A +AS TF   HL F FL+L SSVQ EARVNKFFSKFIHTD + V+P   SPAP+SVPPE
Sbjct: 3   AASASTTFNFNHLSFFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVPNTLSPAPLSVPPE 62

Query: 62  ISPSLAPTPAPAPFFDESQNAYGLYGSDADNSEGSRTITDVEEEILAEDGE-DEESHKSG 121
            SPSLAPTPAPAPFFDESQNAYGLYGSD D  E  RTITDVEEEIL  +G+ DE + KS 
Sbjct: 63  TSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDETNRKSE 122

Query: 122 YQTNLHTDNFESPKRSESNN-DGNSGYRNSEYESNNDHRNSEYE-NNNEHRNSEYENNNE 181
           +  N      +  ++ ++ N + N+G+RNSEYE++N++RNSEYE NNNE RN +Y++N E
Sbjct: 123 FPMNNFVQTRDDEEQYQNKNYEYNNGFRNSEYENHNEYRNSEYENNNNEGRNYQYQSNFE 182

Query: 182 ---YRNSEYENNNEHRTSED------------ENNNEHRNSEYENNNEHRTSEDENNNEH 225
              YR S +E   +   S+              + N+  N  Y +  ++   E ++  E+
Sbjct: 183 DGGYRRSRFEPTEQQGMSDTRFMENGRYFHDINSKNDEENGSYGSKKKYPKYEFDSMEEY 242

BLAST of CmoCh19G009070 vs. NCBI nr
Match: gi|778730106|ref|XP_011659700.1| (PREDICTED: protein E6-like [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 3.0e-31
Identity = 138/278 (49.64%), Postives = 169/278 (60.79%), Query Frame = 1

Query: 2   AMAASITFK--HLPFIF-----LILSSVQIEARVNKFFSKFIHTDRDVVLPVAFSPAPVS 61
           A +AS TFK  HL F F     L++SSVQIEARVNKFFSKFIHTD +VV P   SPAP+S
Sbjct: 3   AASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVV-PNTLSPAPLS 62

Query: 62  VPPEISPSLAPTPAPAPFFDESQNAYGLYGSDADNSEGSRTITDVEEEILAEDG-EDEES 121
           VPPE SPSLAPTPAPAPFFDESQNAYGLYGSD D  E +RTITDVEEEIL  +G +DE +
Sbjct: 63  VPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEGN 122

Query: 122 HKSGYQTNLHTDNFESPKRSESNNDGNSGYRNSEYESNNDHRNSEYENNNEHRNSEYENN 181
            KSG+  N    NF   +  E        Y+N  YE+NN  RNSEY+N NE+RNSEYEN 
Sbjct: 123 DKSGFPMN----NFVETRNEEEQ------YQNKNYENNNGFRNSEYDNRNEYRNSEYEN- 182

Query: 182 NEYRNSEYENNNEHRTSEDENNNE---HRNSEYENNNEHRTSEDENNNEHRNSEYENNNE 241
                    NNNE R  ED+ N E   +R S +E       +E E  ++ R  E    N 
Sbjct: 183 ---------NNNEGRNYEDQRNFEEGGYRRSRFE------PTEQEGMSDTRFME----NG 242

Query: 242 HRTSEDENNNEHRNSEYENNNEHKNSEYENNNEHRNSE 269
               +  + N+  N  Y +  ++   E+++  E+  SE
Sbjct: 243 RYFHDINSRNDEENGSYGSKKKYPKYEFDSMEEYERSE 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K1D4_CUCSA2.1e-3149.64Uncharacterized protein OS=Cucumis sativus GN=Csa_7G038700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659110946|ref|XP_008455495.1|2.5e-3350.82PREDICTED: protein E6-like [Cucumis melo][more]
gi|778730106|ref|XP_011659700.1|3.0e-3149.64PREDICTED: protein E6-like [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G009070.1CmoCh19G009070.1mRNA


The following gene(s) are paralogous to this gene:

None