CmoCh19G007640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G007640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chaperone DnaJ
Location	Cmo_Chr19 : 7742209 .. 7742655 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGCCGCTCTTTCCGTCCGCCTCAACCGTCTTTCCGCCGGCGCAGCCTCTCCGACATCACCGGGTCACCGGCTCGGTTCGAACTTCATCGGAAAATTGAATCAATGGAAAGGCGTTGGCATTTCACAAATCTTTCGAACATTTGCGATGAGGGGAATGCTGGTGCAAGCTGGTTCGTGAGCCGATGACTCTGCGCCGTTCGAGATATCCGTGGAAAATGCTCTCGATGTTCTTGGAGTCTCCGATGAGGCCTCGTTCGGTGATATTCTTCGTGCTAGGAAGTCGATTATGGCCGCTTGCAAGGACGACCAAGAAACAGTCGCGCAGGTAGAAGGAGTTCGATTTTTTTACTTCGTTTGGGGAATTTTGGTATTTTAGGGATTTAAATATTGCGTTCCCTTTGATTTGAGTATTGGCATTCGGAATTGGGAAGTCCGATTGATT

mRNA sequence

ATGACGGCCGCTCTTTCCGTCCGCCTCAACCGTCTTTCCGCCGGCGCAGCCTCTCCGACATCACCGGGTCACCGGCTCGGTTCGAACTTCATCGGAAAATTGAATCAATGGAAAGGCGTTGGCATTTCACAAATCTTTCGAACATTTGCGATGAGGGGAATGCTGGTGCAAGCTGCCGATGACTCTGCGCCGTTCGAGATATCCGTGGAAAATGCTCTCGATGTTCTTGGAGTCTCCGATGAGGCCTCGTTCGGTGATATTCTTCGTGCTAGGAAGTCGATTATGGCCGCTTGCAAGGACGACCAAGAAACAGTCGCGCAGGGATTTAAATATTGCGTTCCCTTTGATTTGAGTATTGGCATTCGGAATTGGGAAGTCCGATTGATT

Coding sequence (CDS)

ATGACGGCCGCTCTTTCCGTCCGCCTCAACCGTCTTTCCGCCGGCGCAGCCTCTCCGACATCACCGGGTCACCGGCTCGGTTCGAACTTCATCGGAAAATTGAATCAATGGAAAGGCGTTGGCATTTCACAAATCTTTCGAACATTTGCGATGAGGGGAATGCTGGTGCAAGCTGCCGATGACTCTGCGCCGTTCGAGATATCCGTGGAAAATGCTCTCGATGTTCTTGGAGTCTCCGATGAGGCCTCGTTCGGTGATATTCTTCGTGCTAGGAAGTCGATTATGGCCGCTTGCAAGGACGACCAAGAAACAGTCGCGCAGGGATTTAAATATTGCGTTCCCTTTGATTTGAGTATTGGCATTCGGAATTGGGAAGTCCGATTGATT

Homology

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BLAST of CmoCh19G007640 vs. TrEMBL
Match: M5VKK7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008938mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18
Identity = 62/114 (54.39%), Postives = 74/114 (64.91%), Query Frame = 1


Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGK----LNQWKGVGISQIFRTFAMRGMLV 60
           M A LSVR NRLSAG++ P  P  R G   + K     + W+G  I    RT A    LV
Sbjct: 23  MAATLSVRPNRLSAGSSFPRPPVRRPGPARLRKSDVQFDPWRG-SIVPSNRTLAWAATLV 82

Query: 61  QA---ADDSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
            A   ADDSAPFE+SVE+AL +LGVSD ASF +ILRA+ SI+ ACKDDQE +AQ
Sbjct: 83  HAGSRADDSAPFEMSVESALKLLGVSDGASFDEILRAKNSIVDACKDDQEAIAQ 135

[Close]

BLAST of CmoCh19G007640 vs. TrEMBL
Match: A0A067KAQ4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13083 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-17
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 3   AALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQ--WKGVGISQIFRTFAMRGMLVQAAD 62
           A LSVR NRLS+G+  P  P     ++ I  L    W+ V I  + R+F         AD
Sbjct: 4   ATLSVRPNRLSSGSPFPRPPSSATTTSQIKSLKNDPWR-VTIVPLRRSFVGSARAGSRAD 63

Query: 63  DSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
           DSAPFE+SVENAL +LGVS+ ASF DILRA+KSI+A CKDDQ+ +AQ
Sbjct: 64  DSAPFEMSVENALKLLGVSENASFDDILRAKKSILATCKDDQDAIAQ 109

[Close]

BLAST of CmoCh19G007640 vs. TrEMBL
Match: I3SNF3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-16
Identity = 58/114 (50.88%), Postives = 74/114 (64.91%), Query Frame = 1


Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGK---LNQWKGVGI-SQIFRTFAMRGMLV 60
           M A LSVR +RLSAG++ P  P   L +   GK   +  W+G  + +   R F      V
Sbjct: 1   MAATLSVRPDRLSAGSSFPRPPPRLLDAARRGKPAVIEPWRGAPLQTHCRRAFTRIVPPV 60

Query: 61  QAA---DDSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
           QAA   DDSAPFE+SVENAL +LGVS+ ASF DILRA+ +I+A CKDDQ+ +AQ
Sbjct: 61  QAASRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNAILANCKDDQQAIAQ 114

[Close]

BLAST of CmoCh19G007640 vs. TrEMBL
Match: W9QWT4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006058 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.5e-16
Identity = 58/114 (50.88%), Postives = 70/114 (61.40%), Query Frame = 1


Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFI----GKLNQWKG-VGISQIF--RTFAMRG 60
           M A LSVR NRLS G + P+ P  R G         K   W G +  S++   +T     
Sbjct: 1   MAATLSVRPNRLSGGYSLPSPPHRRTGPVHFRRPADKFEPWTGSIAPSRLALAKTTPAPV 60

Query: 61  MLVQAADDSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
                ADDSAPFE+SVENAL +LGVS+ ASF DILRA+ SI+AACKDDQE +AQ
Sbjct: 61  RAGSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNSIVAACKDDQEAIAQ 114

[Close]

BLAST of CmoCh19G007640 vs. TrEMBL
Match: F6I0Y6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g02670 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.0e-15
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 1   MTAALSVRLNRL----SAGAASPTSPGHRLGSNFIGKLNQWK--GVGISQIFRTFAMRGM 60
           M A L +R NR     +AG++ P  P  R GS  +  L + +  G G+S   R    R  
Sbjct: 1   MAATLFLRPNRAVASAAAGSSRPRPPARRSGSAHVATLIRTRRFGWGVSSPSRRALFRTR 60

Query: 61  LVQAADDSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
               ADDSAPFE+SVE+AL +LGVS+ ASF DILRA+ SI+ ACKD+QE +AQ
Sbjct: 61  AGSRADDSAPFEMSVESALKLLGVSEGASFDDILRAKNSIVKACKDNQEAIAQ 113

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BLAST of CmoCh19G007640 vs. TAIR10
Match: AT2G20920.1 (AT2G20920.1 Protein of unknown function (DUF3353))

HSP 1 Score: 67.4 bits (163), Expect = 7.4e-12
Identity = 51/112 (45.54%), Postives = 63/112 (56.25%), Query Frame = 1


Query: 2   TAALSV-RLNRLSAGAASPTSPGHRL----GSNFIGKLNQ-WKGVGISQIFRTFAMRGML 61
           TAALS  R NRLS+  AS   P H L       F  +  Q W+   I    R        
Sbjct: 3   TAALSAARPNRLSS--ASSDVPLHPLYLPTKLQFPSRKTQLWRSAAILLPTRRRCAPPRA 62

Query: 62  VQAADDSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
              ADDS PF++SVE AL VLGVS+ ASF +ILRA+KSI+A+ KDD   ++Q
Sbjct: 63  SSRADDSPPFDMSVETALKVLGVSEGASFDEILRAKKSILASRKDDPNAISQ 112

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BLAST of CmoCh19G007640 vs. NCBI nr
Match: gi|659094185|ref|XP_008447928.1| (PREDICTED: uncharacterized protein LOC103490266 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-28
Identity = 74/110 (67.27%), Postives = 82/110 (74.55%), Query Frame = 1


Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQA-- 60
           M A LSVR N LS GAA PT P HRL S F+GK    KGV ISQ+F+T AM   LVQA  
Sbjct: 1   MAATLSVRPNPLSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

Query: 61  -ADDSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
            ADDS PFE+SV+NAL VLGVSD ASF DILRAR SI+A CKD++ETVAQ
Sbjct: 61  RADDSTPFEMSVDNALKVLGVSDAASFDDILRARNSILADCKDEEETVAQ 110

[Close]

BLAST of CmoCh19G007640 vs. NCBI nr
Match: gi|657971865|ref|XP_008377720.1| (PREDICTED: uncharacterized protein LOC103440790 [Malus domestica])

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 60/111 (54.05%), Postives = 71/111 (63.96%), Query Frame = 1


Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGK----LNQWKGVGISQIFRTFAMRGMLV 60
           M A LSVR NRLSAG++ P  P  R G   I K       W+G  I+   RT        
Sbjct: 1   MAATLSVRPNRLSAGSSFPRPPLRRPGPTGIRKPAMQFEPWRG-SIAPSRRTLTWAATAA 60

Query: 61  QAADDSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
             ADD+APFE+SVENAL +LGVSD ASF +ILRA+ SI+AACKDDQE +AQ
Sbjct: 61  SRADDNAPFEMSVENALKLLGVSDGASFDEILRAKNSIVAACKDDQEAIAQ 110

[Close]

BLAST of CmoCh19G007640 vs. NCBI nr
Match: gi|694329829|ref|XP_009355639.1| (PREDICTED: uncharacterized protein LOC103946615 [Pyrus x bretschneideri])

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18
Identity = 60/111 (54.05%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGK----LNQWKGVGISQIFRTFAMRGMLV 60
           M A LSVR NRLSAG++ P  P  R G   I K       W+G  I    RT        
Sbjct: 1   MAATLSVRPNRLSAGSSFPRPPLRRPGPTGIRKPATQFEPWRG-SIVPSRRTLTWAATAA 60

Query: 61  QAADDSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
             ADD+APFE+SVENAL +LGVSD ASF +ILRA+ SI+AACKDDQE +AQ
Sbjct: 61  SRADDNAPFEMSVENALKLLGVSDGASFDEILRAKNSIVAACKDDQEAIAQ 110

[Close]

BLAST of CmoCh19G007640 vs. NCBI nr
Match: gi|645260931|ref|XP_008236051.1| (PREDICTED: uncharacterized protein LOC103334854 [Prunus mume])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 63/114 (55.26%), Postives = 73/114 (64.04%), Query Frame = 1


Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGK----LNQWKGVGISQIFRTFAMRGMLV 60
           M A LSVR NRLSAG++ P  P  R     + K       W+G  I    RT A    LV
Sbjct: 23  MAATLSVRPNRLSAGSSFPRPPVRRPVPARLRKPDVQFEPWRG-SIVPSNRTLAWAATLV 82

Query: 61  QA---ADDSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
           QA   ADDSAPFE+SVENAL +LGVSD ASF +ILRA+ SI+ ACKDDQE +AQ
Sbjct: 83  QAGSRADDSAPFEMSVENALKLLGVSDGASFDEILRAKNSIVDACKDDQEAIAQ 135

[Close]

BLAST of CmoCh19G007640 vs. NCBI nr
Match: gi|595793399|ref|XP_007200448.1| (hypothetical protein PRUPE_ppa008938mg [Prunus persica])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 62/114 (54.39%), Postives = 74/114 (64.91%), Query Frame = 1


Query: 1   MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGK----LNQWKGVGISQIFRTFAMRGMLV 60
           M A LSVR NRLSAG++ P  P  R G   + K     + W+G  I    RT A    LV
Sbjct: 23  MAATLSVRPNRLSAGSSFPRPPVRRPGPARLRKSDVQFDPWRG-SIVPSNRTLAWAATLV 82

Query: 61  QA---ADDSAPFEISVENALDVLGVSDEASFGDILRARKSIMAACKDDQETVAQ 108
            A   ADDSAPFE+SVE+AL +LGVSD ASF +ILRA+ SI+ ACKDDQE +AQ
Sbjct: 83  HAGSRADDSAPFEMSVESALKLLGVSDGASFDEILRAKNSIVDACKDDQEAIAQ 135

The following BLAST results are available for this feature:

BLAST of CmoCh19G007640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G007640 vs. TrEMBL


Match Name	E-value	Identity	Description
M5VKK7_PRUPE	7.7e-18	54.39	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008938mg PE=4 SV=1	[more]
A0A067KAQ4_JATCU	3.8e-17	52.34	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13083 PE=4 SV=1	[more]
I3SNF3_LOTJA	3.2e-16	50.88	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
W9QWT4_9ROSA	5.5e-16	50.88	Uncharacterized protein OS=Morus notabilis GN=L484_006058 PE=4 SV=1	[more]
F6I0Y6_VITVI	8.0e-15	47.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g02670 PE=4 SV=...	[more]

BLAST of CmoCh19G007640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20920.1	7.4e-12	45.54	Protein of unknown function (DUF3353)	[more]

BLAST of CmoCh19G007640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094185\|ref\|XP_008447928.1\|	3.1e-28	67.27	PREDICTED: uncharacterized protein LOC103490266 [Cucumis melo]	[more]
gi\|657971865\|ref\|XP_008377720.1\|	1.0e-18	54.05	PREDICTED: uncharacterized protein LOC103440790 [Malus domestica]	[more]
gi\|694329829\|ref\|XP_009355639.1\|	2.2e-18	54.05	PREDICTED: uncharacterized protein LOC103946615 [Pyrus x bretschneideri]	[more]
gi\|645260931\|ref\|XP_008236051.1\|	1.1e-17	55.26	PREDICTED: uncharacterized protein LOC103334854 [Prunus mume]	[more]
gi\|595793399\|ref\|XP_007200448.1\|	1.1e-17	54.39	hypothetical protein PRUPE_ppa008938mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G007640.1	CmoCh19G007640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33372	FAMILY NOT NAMED	coord: 1..107 score: 1.1
None	No IPR available	PANTHER	PTHR33372:SF5	SUBFAMILY NOT NAMED	coord: 1..107 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G007640	Cucsa.234120	Cucumber (Gy14) v1	cgycmoB0646
CmoCh19G007640	Cucsa.370370	Cucumber (Gy14) v1	cgycmoB1025
CmoCh19G007640	CmaCh02G002710	Cucurbita maxima (Rimu)	cmacmoB596
CmoCh19G007640	Cla015809	Watermelon (97103) v1	cmowmB496
CmoCh19G007640	Cla020263	Watermelon (97103) v1	cmowmB494
CmoCh19G007640	Csa2G271400	Cucumber (Chinese Long) v2	cmocuB492
CmoCh19G007640	Csa7G014570	Cucumber (Chinese Long) v2	cmocuB518
CmoCh19G007640	MELO3C020831	Melon (DHL92) v3.5.1	cmomeB445
CmoCh19G007640	MELO3C013335	Melon (DHL92) v3.5.1	cmomeB453
CmoCh19G007640	ClCG02G012070	Watermelon (Charleston Gray)	cmowcgB458
CmoCh19G007640	ClCG02G003930	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G007640	CSPI02G13710	Wild cucumber (PI 183967)	cmocpiB500
CmoCh19G007640	CSPI07G01150	Wild cucumber (PI 183967)	cmocpiB524
CmoCh19G007640	Lsi10G005080	Bottle gourd (USVL1VR-Ls)	cmolsiB451
CmoCh19G007640	Lsi11G012160	Bottle gourd (USVL1VR-Ls)	cmolsiB457
CmoCh19G007640	Cp4.1LG16g03240	Cucurbita pepo (Zucchini)	cmocpeB484
CmoCh19G007640	Cp4.1LG15g06140	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G007640	MELO3C020831.2	Melon (DHL92) v3.6.1	cmomedB512
CmoCh19G007640	MELO3C013335.2	Melon (DHL92) v3.6.1	cmomedB522
CmoCh19G007640	CsaV3_2G016230	Cucumber (Chinese Long) v3	cmocucB0591
CmoCh19G007640	Cla97C02G037730	Watermelon (97103) v2	cmowmbB509
CmoCh19G007640	Bhi10G001426	Wax gourd	cmowgoB0665
CmoCh19G007640	Bhi05G001455	Wax gourd	cmowgoB0653
CmoCh19G007640	CsGy2G013620	Cucumber (Gy14) v2	cgybcmoB202
CmoCh19G007640	Carg16160	Silver-seed gourd	carcmoB0472
CmoCh19G007640	Carg05190	Silver-seed gourd	carcmoB1090

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G007640	CmoCh20G007350	Cucurbita moschata (Rifu)	cmocmoB383
CmoCh19G007640	CmoCh02G002680	Cucurbita moschata (Rifu)	cmocmoB386

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G007640	Watermelon (97103) v2	cmowmbB512
CmoCh19G007640	Cucurbita moschata (Rifu)	cmocmoB108
CmoCh19G007640	Cucurbita maxima (Rimu)	cmacmoB145
CmoCh19G007640	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G007640	Cucurbita maxima (Rimu)	cmacmoB548
CmoCh19G007640	Cucurbita pepo (Zucchini)	cmocpeB492
CmoCh19G007640	Cucumber (Gy14) v2	cgybcmoB927
CmoCh19G007640	Silver-seed gourd	carcmoB1368
CmoCh19G007640	Silver-seed gourd	carcmoB1427
CmoCh19G007640	Cucumber (Chinese Long) v3	cmocucB0622