CmoCh19G005470 (gene) Cucurbita moschata (Rifu)

NameCmoCh19G005470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCAP, cysteine-rich secretory protein, antigen 5
LocationCmo_Chr19 : 6314754 .. 6315064 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCAACATAAACATAACTGTAAGTTGGTGCACGCACGCGAACGATATGGAGAAAATCTTGCATGGAGCAGCTAAAACTTATGGGGCATTGCTGCAGTTTGGATGTGGGTCATCGAGAAGTAATATTACCATCCTCGCACCAATATTTGTGCGGCTGGTAAGGTGTGTGGCCATTACACTCAAGTGGTGCGGAAAAAGTCGGTGAGAATTGGATGTGCCAAAGTGAGATGCACAAACAATCGTGGTACGTTCATCACTTGCAACTATGATCCACCGGGCAATGTCAGAGGTCAAAGGCCATTCTAA

mRNA sequence

ATGCCAACCAACATAAACATAACTGTAAGTTGGTGCACGCACGCGAACGATATGGAGAAAATCTTGCATGGAGCAGCTAAAACTTATGGGGCATTGCTGCAGTTTGGATGTGGGTCATCGAGAAGTAATATTACCATCCTCGCACCAATATTTGTGCGGCTGGTGTGTGGCCATTACACTCAAGTGGTGCGGAAAAAGTCGGTGAGAATTGGATGTGCCAAAGTGAGATGCACAAACAATCGTGGTACGTTCATCACTTGCAACTATGATCCACCGGGCAATGTCAGAGGTCAAAGGCCATTCTAA

Coding sequence (CDS)

ATGCCAACCAACATAAACATAACTGTAAGTTGGTGCACGCACGCGAACGATATGGAGAAAATCTTGCATGGAGCAGCTAAAACTTATGGGGCATTGCTGCAGTTTGGATGTGGGTCATCGAGAAGTAATATTACCATCCTCGCACCAATATTTGTGCGGCTGGTGTGTGGCCATTACACTCAAGTGGTGCGGAAAAAGTCGGTGAGAATTGGATGTGCCAAAGTGAGATGCACAAACAATCGTGGTACGTTCATCACTTGCAACTATGATCCACCGGGCAATGTCAGAGGTCAAAGGCCATTCTAA
BLAST of CmoCh19G005470 vs. Swiss-Prot
Match: PRB1_ARATH (Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=PRB1 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-14
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + SVR+GCAKVRC NN GT I+CNYDPPGN   Q+P+
Sbjct: 116 VCGHYTQVVWRNSVRLGCAKVRC-NNGGTIISCNYDPPGNYANQKPY 161

BLAST of CmoCh19G005470 vs. Swiss-Prot
Match: PR1_SAMNI (Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.4e-14
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + SVRIGCA+VRC NN   FITCNY PPGN  GQRP+
Sbjct: 122 VCGHYTQVVWRNSVRIGCARVRC-NNGAWFITCNYSPPGNYAGQRPY 167

BLAST of CmoCh19G005470 vs. Swiss-Prot
Match: PR12_HORVU (Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.4e-14
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + S  IGCA+V C NNRG FITCNY+P GN+ GQ+P+
Sbjct: 118 VCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPRGNIVGQKPY 164

BLAST of CmoCh19G005470 vs. Swiss-Prot
Match: PR13_HORVU (Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.4e-14
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + S  IGCA+V C NNRG FITCNY+P GN+ GQ+P+
Sbjct: 118 VCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPRGNIVGQKPY 164

BLAST of CmoCh19G005470 vs. Swiss-Prot
Match: PR1_HORVU (Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.4e-14
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + S  IGCA+V C NNRG FITCNY+P GN+ GQ+P+
Sbjct: 118 VCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPRGNIIGQKPY 164

BLAST of CmoCh19G005470 vs. TrEMBL
Match: A0A0A0K6A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070253 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-15
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + SVRIGCAKV CTNN GTFITCNYDPPGN  GQRP+
Sbjct: 118 VCGHYTQVVWRNSVRIGCAKVICTNNGGTFITCNYDPPGNFVGQRPY 164

BLAST of CmoCh19G005470 vs. TrEMBL
Match: G7ILE4_MEDTR (CAP, cysteine-rich secretory protein, antigen 5 OS=Medicago truncatula GN=MTR_2g012370 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-15
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + S R+GCAKVRC NNRGTFITCNYDPPGN  G++P+
Sbjct: 116 VCGHYTQVVWRNSQRVGCAKVRCDNNRGTFITCNYDPPGNYVGEKPY 162

BLAST of CmoCh19G005470 vs. TrEMBL
Match: I3S5U8_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-15
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + S R+GCAKVRC NNRGTFITCNYDPPGN  G++P+
Sbjct: 121 VCGHYTQVVWRNSQRVGCAKVRCDNNRGTFITCNYDPPGNYVGEKPY 167

BLAST of CmoCh19G005470 vs. TrEMBL
Match: G7IFD1_MEDTR (CAP, cysteine-rich secretory protein, antigen 5 OS=Medicago truncatula GN=MTR_2g010600 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-15
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + S R+GCAKVRC NNRGTFITCNYDPPGN  G++P+
Sbjct: 116 VCGHYTQVVWRNSQRVGCAKVRCDNNRGTFITCNYDPPGNYVGEKPY 162

BLAST of CmoCh19G005470 vs. TrEMBL
Match: M0UNM7_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.2e-15
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV +KS+RIGCA+V C  NRG FITCNYDPPGN  G+RPF
Sbjct: 118 VCGHYTQVVWRKSIRIGCARVVCAGNRGVFITCNYDPPGNFNGERPF 164

BLAST of CmoCh19G005470 vs. TAIR10
Match: AT2G14580.1 (AT2G14580.1 basic pathogenesis-related protein 1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-15
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + SVR+GCAKVRC NN GT I+CNYDPPGN   Q+P+
Sbjct: 116 VCGHYTQVVWRNSVRLGCAKVRC-NNGGTIISCNYDPPGNYANQKPY 161

BLAST of CmoCh19G005470 vs. TAIR10
Match: AT2G14610.1 (AT2G14610.1 pathogenesis-related gene 1)

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-14
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV +KSVR+GCAKVRC NN GT I+CNYDP GN   ++P+
Sbjct: 116 VCGHYTQVVWRKSVRLGCAKVRC-NNGGTIISCNYDPRGNYVNEKPY 161

BLAST of CmoCh19G005470 vs. TAIR10
Match: AT4G33710.1 (AT4G33710.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 4.7e-14
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1

Query: 56  CGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           CGHYTQVV K S  +GCAKV+C N  GTF+TCNY  PGNVRG+RP+
Sbjct: 122 CGHYTQVVWKNSEWVGCAKVKCDNG-GTFVTCNYSHPGNVRGRRPY 166

BLAST of CmoCh19G005470 vs. TAIR10
Match: AT4G25790.1 (AT4G25790.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 4.7e-14
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           +CGHYTQ+V +++ R+GCA+V C N  G FITCNYDPPGN  G++P+
Sbjct: 164 MCGHYTQIVWRETRRLGCARVVCENGAGVFITCNYDPPGNYVGEKPY 210

BLAST of CmoCh19G005470 vs. TAIR10
Match: AT3G19690.1 (AT3G19690.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 6.2e-14
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1

Query: 56  CGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           C HYTQVV K +VR+GCAKV C N+ GTFITCNYDPPGN  G++PF
Sbjct: 117 CLHYTQVVWKNTVRLGCAKVVC-NSGGTFITCNYDPPGNYIGEKPF 161

BLAST of CmoCh19G005470 vs. NCBI nr
Match: gi|778724783|ref|XP_011658861.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-15
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + SVRIGCAKV CTNN GTFITCNYDPPGN  GQRP+
Sbjct: 118 VCGHYTQVVWRNSVRIGCAKVICTNNGGTFITCNYDPPGNFVGQRPY 164

BLAST of CmoCh19G005470 vs. NCBI nr
Match: gi|659110129|ref|XP_008455064.1| (PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 6.9e-15
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + SVRIGCAKVRCTNNRGTFI CNY+P GN+ GQ+P+
Sbjct: 118 VCGHYTQVVWRNSVRIGCAKVRCTNNRGTFIICNYEPRGNIIGQKPY 164

BLAST of CmoCh19G005470 vs. NCBI nr
Match: gi|357446351|ref|XP_003593453.1| (CAP, cysteine-rich secretory protein, antigen 5 [Medicago truncatula])

HSP 1 Score: 88.2 bits (217), Expect = 9.0e-15
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + S R+GCAKVRC NNRGTFITCNYDPPGN  G++P+
Sbjct: 116 VCGHYTQVVWRNSQRVGCAKVRCDNNRGTFITCNYDPPGNYVGEKPY 162

BLAST of CmoCh19G005470 vs. NCBI nr
Match: gi|357446161|ref|XP_003593358.1| (CAP, cysteine-rich secretory protein, antigen 5 [Medicago truncatula])

HSP 1 Score: 88.2 bits (217), Expect = 9.0e-15
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + S R+GCAKVRC NNRGTFITCNYDPPGN  G++P+
Sbjct: 116 VCGHYTQVVWRNSQRVGCAKVRCDNNRGTFITCNYDPPGNYVGEKPY 162

BLAST of CmoCh19G005470 vs. NCBI nr
Match: gi|388495148|gb|AFK35640.1| (unknown [Medicago truncatula])

HSP 1 Score: 88.2 bits (217), Expect = 9.0e-15
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 55  VCGHYTQVVRKKSVRIGCAKVRCTNNRGTFITCNYDPPGNVRGQRPF 102
           VCGHYTQVV + S R+GCAKVRC NNRGTFITCNYDPPGN  G++P+
Sbjct: 121 VCGHYTQVVWRNSQRVGCAKVRCDNNRGTFITCNYDPPGNYVGEKPY 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PRB1_ARATH3.4e-1472.34Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=PRB1 PE=2 SV=1[more]
PR1_SAMNI4.4e-1474.47Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1[more]
PR12_HORVU4.4e-1468.09Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1[more]
PR13_HORVU4.4e-1468.09Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare PE=2 SV=1[more]
PR1_HORVU4.4e-1468.09Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K6A4_CUCSA2.1e-1582.98Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070253 PE=3 SV=1[more]
G7ILE4_MEDTR6.2e-1576.60CAP, cysteine-rich secretory protein, antigen 5 OS=Medicago truncatula GN=MTR_2g... [more]
I3S5U8_MEDTR6.2e-1576.60Uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
G7IFD1_MEDTR6.2e-1576.60CAP, cysteine-rich secretory protein, antigen 5 OS=Medicago truncatula GN=MTR_2g... [more]
M0UNM7_HORVD8.2e-1576.60Uncharacterized protein OS=Hordeum vulgare var. distichum PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G14580.11.9e-1572.34 basic pathogenesis-related protein 1[more]
AT2G14610.12.1e-1470.21 pathogenesis-related gene 1[more]
AT4G33710.14.7e-1469.57 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r... [more]
AT4G25790.14.7e-1459.57 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r... [more]
AT3G19690.16.2e-1471.74 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r... [more]
Match NameE-valueIdentityDescription
gi|778724783|ref|XP_011658861.1|3.1e-1582.98PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus][more]
gi|659110129|ref|XP_008455064.1|6.9e-1578.72PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo][more]
gi|357446351|ref|XP_003593453.1|9.0e-1576.60CAP, cysteine-rich secretory protein, antigen 5 [Medicago truncatula][more]
gi|357446161|ref|XP_003593358.1|9.0e-1576.60CAP, cysteine-rich secretory protein, antigen 5 [Medicago truncatula][more]
gi|388495148|gb|AFK35640.1|9.0e-1576.60unknown [Medicago truncatula][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001283Allrgn_V5/Tpx1
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0005576 extracellular region
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G005470.1CmoCh19G005470.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001283Cysteine-rich secretory protein, allergen V5/Tpx-1-relatedPRINTSPR00837V5TPXLIKEcoord: 84..97
score: 2.9E-8coord: 56..72
score: 2.
IPR001283Cysteine-rich secretory protein, allergen V5/Tpx-1-relatedPANTHERPTHR10334CYSTEINE-RICH SECRETORY PROTEIN-RELATEDcoord: 55..101
score: 4.2
IPR014044CAP domainGENE3DG3DSA:3.40.33.10coord: 54..101
score: 4.6
IPR014044CAP domainPFAMPF00188CAPcoord: 27..89
score: 3.
IPR014044CAP domainSMARTSM00198SCP_3coord: 6..97
score: 2.
IPR014044CAP domainunknownSSF55797PR-1-likecoord: 52..101
score: 4.71
IPR018244Allergen V5/Tpx-1-related, conserved sitePROSITEPS01010CRISP_2coord: 84..95
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None