CmoCh19G004490 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G004490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Allyl alcohol dehydrogenase-like protein
Location	Cmo_Chr19 : 5471773 .. 5472069 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTCTCTCATGGTGGAAAGGTGGTTCTGCGCCATCGGAGTCCAATTCGAAGCCGCAGCCTCCTCCGAAGAACGTCTCTCAGCCGGCGGAAGTCCCTGGCCTTAACGGTGCCGTCGAAGTCCCCCGACCGGCCGCCACTGTGACCGTCTTCGAGTTCGGCTCCGTTTCCGCTTCATCCGATAGTGTCACCCTCACCGGTTACTGCCCCGTCTCCGACGACCTCGAGCCCTGCCGCTGGGAGATTCTGCCTGCAAGCGGCTCCGACGCGCCTCTTTTTCGCGTCGTCTTCTGA

mRNA sequence

ATGGGTCTTCTCTCATGGTGGAAAGGTGGTTCTGCGCCATCGGAGTCCAATTCGAAGCCGCAGCCTCCTCCGAAGAACGTCTCTCAGCCGGCGGAAGTCCCTGGCCTTAACGGTGCCGTCGAAGTCCCCCGACCGGCCGCCACTGTGACCGTCTTCGAGTTCGGCTCCGTTTCCGCTTCATCCGATAGTGTCACCCTCACCGGTTACTGCCCCGTCTCCGACGACCTCGAGCCCTGCCGCTGGGAGATTCTGCCTGCAAGCGGCTCCGACGCGCCTCTTTTTCGCGTCGTCTTCTGA

Coding sequence (CDS)

ATGGGTCTTCTCTCATGGTGGAAAGGTGGTTCTGCGCCATCGGAGTCCAATTCGAAGCCGCAGCCTCCTCCGAAGAACGTCTCTCAGCCGGCGGAAGTCCCTGGCCTTAACGGTGCCGTCGAAGTCCCCCGACCGGCCGCCACTGTGACCGTCTTCGAGTTCGGCTCCGTTTCCGCTTCATCCGATAGTGTCACCCTCACCGGTTACTGCCCCGTCTCCGACGACCTCGAGCCCTGCCGCTGGGAGATTCTGCCTGCAAGCGGCTCCGACGCGCCTCTTTTTCGCGTCGTCTTCTGA

Homology

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BLAST of CmoCh19G004490 vs. TrEMBL
Match: A0A0A0LF75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G910650 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.0e-38
Identity = 80/99 (80.81%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 1  MGLLSWWKGGSAPSESNSKP-QPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSA 60
          MGLLSWWKG S PS+S SKP QPPPKN+SQPAEVPGLNGA++VPR   +VT+FEFGSVS+
Sbjct: 1  MGLLSWWKGQSPPSDSTSKPPQPPPKNLSQPAEVPGLNGALQVPRLDTSVTIFEFGSVSS 60

Query: 61 SSDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          SSD VTLTGYCPVSD+ EPCRWEILPAS S+APLFRVVF
Sbjct: 61 SSDKVTLTGYCPVSDEFEPCRWEILPASDSNAPLFRVVF 99

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BLAST of CmoCh19G004490 vs. TrEMBL
Match: A5BJC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00610 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 6.4e-33
Identity = 74/100 (74.00%), Postives = 78/100 (78.00%), Query Frame = 1


Query: 1  MGLLSWWKGGSAPSESNSKPQPPPKNVSQPAEVPGLNGAVEVPRPAAT--VTVFEFGSVS 60
          MGLLSWWK    P+    KP P P     P E+PG+NGAVEVPRP AT  VTVFEFGSV+
Sbjct: 1  MGLLSWWKPSQKPTSETKKPDPKP---GSPPEIPGMNGAVEVPRPQATPDVTVFEFGSVA 60

Query: 61 ASSDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          ASSD VTL GYCPVSDDLEPCRWEILPASGSDAP FRVVF
Sbjct: 61 ASSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPQFRVVF 97

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BLAST of CmoCh19G004490 vs. TrEMBL
Match: M5WEJ1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020908mg PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.0e-31
Identity = 72/98 (73.47%), Postives = 79/98 (80.61%), Query Frame = 1


Query: 1  MGLLSWWKGGSAPSESNSKPQPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSAS 60
          MGLLSWWKG     E+  KP P PK    P E PG+NGAVEVPRPA  +TVFEFGSV+AS
Sbjct: 1  MGLLSWWKGKDPKPET--KPNPAPK----PVEAPGMNGAVEVPRPA-NITVFEFGSVAAS 60

Query: 61 SDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          +D+VTL GYCPVS+DLEPCRWEILPASGSDAP FRVVF
Sbjct: 61 ADNVTLAGYCPVSEDLEPCRWEILPASGSDAPQFRVVF 91

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BLAST of CmoCh19G004490 vs. TrEMBL
Match: W9S5F9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023332 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30
Identity = 70/103 (67.96%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 1  MGLLSWWKGGS-----APSESNSKPQPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFG 60
          MG+LSWWKG       +    NSK  P PK    P+EVPG+NGAVEVPRP   +TVFEFG
Sbjct: 1  MGVLSWWKGSDNNKKQSQQSENSKSSPNPK----PSEVPGMNGAVEVPRPPPNITVFEFG 60

Query: 61 SVSASSDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          SV+AS+D VTL GYCPVSDDLEPCRWEILPAS SDAP FRV F
Sbjct: 61 SVAASADKVTLAGYCPVSDDLEPCRWEILPASSSDAPQFRVAF 99

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BLAST of CmoCh19G004490 vs. TrEMBL
Match: A0A059C046_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00313 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-28
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 1


Query: 1  MGLLSWWKGGSAPSESNSKPQPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSAS 60
          MGLLSW+KG   P +S  KP       S P+E PG+NGAVEVPR AA VTVFEFGSV+A+
Sbjct: 1  MGLLSWFKGSPKP-QSEPKPSSALTAASSPSEAPGMNGAVEVPR-AANVTVFEFGSVAAT 60

Query: 61 SDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          +D VTL G+CPVSDDL+PCRWE+LPA+GSDAP FRVVF
Sbjct: 61 ADKVTLAGFCPVSDDLKPCRWEVLPAAGSDAPQFRVVF 96

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BLAST of CmoCh19G004490 vs. TAIR10
Match: AT3G59840.1 (AT3G59840.1 unknown protein)

HSP 1 Score: 121.3 bits (303), Expect = 3.3e-28
Identity = 60/98 (61.22%), Postives = 69/98 (70.41%), Query Frame = 1


Query: 1  MGLLSWWKGGSAPSESNSKPQPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSAS 60
          MG+LSW+ G   PS+S +      +        PG+NGA+EVPRP    TVFEFGSV+A+
Sbjct: 1  MGILSWFTGSPKPSQSETSKPEMIQMPKSETPAPGMNGAIEVPRPDRA-TVFEFGSVAAT 60

Query: 61 SDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
           D VTL GYCPVSDDLEPCRWEILPA G DAP FRVVF
Sbjct: 61 GDRVTLAGYCPVSDDLEPCRWEILPADGKDAPQFRVVF 97

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BLAST of CmoCh19G004490 vs. NCBI nr
Match: gi|659131927|ref|XP_008465928.1| (PREDICTED: uncharacterized protein LOC103503504 [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 7.1e-41
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 1


Query: 1  MGLLSWWKGGSAPSESNSKP-QPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSA 60
          MGLLSWWKG S PS+S SKP QPP KN+SQPAEVPGLNGA+EVPRPAA+VTVFEFGSV+A
Sbjct: 1  MGLLSWWKGQSPPSDSTSKPPQPPSKNLSQPAEVPGLNGALEVPRPAASVTVFEFGSVTA 60

Query: 61 SSDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          SSD VTL GYCPVSDD EPCRWEI+PASGSDAPLFR+VF
Sbjct: 61 SSDKVTLAGYCPVSDDFEPCRWEIMPASGSDAPLFRIVF 99

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BLAST of CmoCh19G004490 vs. NCBI nr
Match: gi|778688071|ref|XP_011652671.1| (PREDICTED: uncharacterized protein LOC101203507 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 4.3e-38
Identity = 80/99 (80.81%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 1  MGLLSWWKGGSAPSESNSKP-QPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSA 60
          MGLLSWWKG S PS+S SKP QPPPKN+SQPAEVPGLNGA++VPR   +VT+FEFGSVS+
Sbjct: 1  MGLLSWWKGQSPPSDSTSKPPQPPPKNLSQPAEVPGLNGALQVPRLDTSVTIFEFGSVSS 60

Query: 61 SSDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          SSD VTLTGYCPVSD+ EPCRWEILPAS S+APLFRVVF
Sbjct: 61 SSDKVTLTGYCPVSDEFEPCRWEILPASDSNAPLFRVVF 99

[Close]

BLAST of CmoCh19G004490 vs. NCBI nr
Match: gi|225427308|ref|XP_002282023.1| (PREDICTED: uncharacterized protein LOC100253981 [Vitis vinifera])

HSP 1 Score: 147.9 bits (372), Expect = 9.3e-33
Identity = 74/100 (74.00%), Postives = 78/100 (78.00%), Query Frame = 1


Query: 1  MGLLSWWKGGSAPSESNSKPQPPPKNVSQPAEVPGLNGAVEVPRPAAT--VTVFEFGSVS 60
          MGLLSWWK    P+    KP P P     P E+PG+NGAVEVPRP AT  VTVFEFGSV+
Sbjct: 1  MGLLSWWKPSQKPTSETKKPDPKP---GSPPEIPGMNGAVEVPRPQATPDVTVFEFGSVA 60

Query: 61 ASSDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          ASSD VTL GYCPVSDDLEPCRWEILPASGSDAP FRVVF
Sbjct: 61 ASSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPQFRVVF 97

[Close]

BLAST of CmoCh19G004490 vs. NCBI nr
Match: gi|645246840|ref|XP_008229540.1| (PREDICTED: uncharacterized protein LOC103328906 [Prunus mume])

HSP 1 Score: 142.9 bits (359), Expect = 3.0e-31
Identity = 73/98 (74.49%), Postives = 80/98 (81.63%), Query Frame = 1


Query: 1  MGLLSWWKGGSAPSESNSKPQPPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSAS 60
          MGLLSWWKG     E+  KP P PK    P EVPG+NGAVEVPRPA  +TVFEFGSV+AS
Sbjct: 1  MGLLSWWKGKDPKPET--KPNPAPK----PVEVPGMNGAVEVPRPA-NITVFEFGSVAAS 60

Query: 61 SDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          +D+VTL GYCPVS+DLEPCRWEILPASGSDAP FRVVF
Sbjct: 61 ADNVTLAGYCPVSEDLEPCRWEILPASGSDAPQFRVVF 91

[Close]

BLAST of CmoCh19G004490 vs. NCBI nr
Match: gi|470128707|ref|XP_004300277.1| (PREDICTED: uncharacterized protein LOC101295048 [Fragaria vesca subsp. vesca])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-31
Identity = 74/99 (74.75%), Postives = 80/99 (80.81%), Query Frame = 1


Query: 1  MGLLSWWKGGSAPSESNSKPQ-PPPKNVSQPAEVPGLNGAVEVPRPAATVTVFEFGSVSA 60
          MGLLSWWKGG      +SKP  P PK    P EVPG+NGAVEVPRPAA VTVFEFGSV+A
Sbjct: 1  MGLLSWWKGG------DSKPNNPDPK----PVEVPGMNGAVEVPRPAAKVTVFEFGSVAA 60

Query: 61 SSDSVTLTGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          S+D VTL GYCPVS++LEPCRWEIL ASGSDAP FRVVF
Sbjct: 61 SADKVTLAGYCPVSEELEPCRWEILSASGSDAPQFRVVF 89

The following BLAST results are available for this feature:

BLAST of CmoCh19G004490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G004490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF75_CUCSA	3.0e-38	80.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G910650 PE=4 SV=1	[more]
A5BJC2_VITVI	6.4e-33	74.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00610 PE=4 SV=...	[more]
M5WEJ1_PRUPE	6.0e-31	73.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020908mg PE=4 SV=1	[more]
W9S5F9_9ROSA	1.3e-30	67.96	Uncharacterized protein OS=Morus notabilis GN=L484_023332 PE=4 SV=1	[more]
A0A059C046_EUCGR	1.3e-28	68.37	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00313 PE=4 SV=1	[more]

BLAST of CmoCh19G004490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59840.1	3.3e-28	61.22	unknown protein	[more]

BLAST of CmoCh19G004490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131927\|ref\|XP_008465928.1\|	7.1e-41	84.85	PREDICTED: uncharacterized protein LOC103503504 [Cucumis melo]	[more]
gi\|778688071\|ref\|XP_011652671.1\|	4.3e-38	80.81	PREDICTED: uncharacterized protein LOC101203507 [Cucumis sativus]	[more]
gi\|225427308\|ref\|XP_002282023.1\|	9.3e-33	74.00	PREDICTED: uncharacterized protein LOC100253981 [Vitis vinifera]	[more]
gi\|645246840\|ref\|XP_008229540.1\|	3.0e-31	74.49	PREDICTED: uncharacterized protein LOC103328906 [Prunus mume]	[more]
gi\|470128707\|ref\|XP_004300277.1\|	5.1e-31	74.75	PREDICTED: uncharacterized protein LOC101295048 [Fragaria vesca subsp. vesca]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G004490.1	CmoCh19G004490.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G004490	Cucsa.313500	Cucumber (Gy14) v1	cgycmoB0868
CmoCh19G004490	CmaCh19G004410	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G004490	Cla016143	Watermelon (97103) v1	cmowmB469
CmoCh19G004490	Csa3G910650	Cucumber (Chinese Long) v2	cmocuB505
CmoCh19G004490	MELO3C003373	Melon (DHL92) v3.5.1	cmomeB458
CmoCh19G004490	CSPI03G47100	Wild cucumber (PI 183967)	cmocpiB511
CmoCh19G004490	Lsi05G000500	Bottle gourd (USVL1VR-Ls)	cmolsiB472
CmoCh19G004490	Cp4.1LG15g03380	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G004490	MELO3C003373.2	Melon (DHL92) v3.6.1	cmomedB529
CmoCh19G004490	CsaV3_3G049530	Cucumber (Chinese Long) v3	cmocucB0605
CmoCh19G004490	Cla97C09G175210	Watermelon (97103) v2	cmowmbB534
CmoCh19G004490	Bhi05G000361	Wax gourd	cmowgoB0647

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G004490	Cucurbita moschata (Rifu)	cmocmoB385
CmoCh19G004490	Cucurbita maxima (Rimu)	cmacmoB597
CmoCh19G004490	Watermelon (Charleston Gray)	cmowcgB446
CmoCh19G004490	Cucurbita pepo (Zucchini)	cmocpeB506
CmoCh19G004490	Cucumber (Gy14) v2	cgybcmoB354
CmoCh19G004490	Silver-seed gourd	carcmoB1054