Cla016143 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016143
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Allyl alcohol dehydrogenase-like protein (AHRD V1 ***- Q9M1Z0_ARATH)
Location	Chr9 : 13237321 .. 13237617 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCCTCTCATGGTGGAAAGGCCAACCTCCGCCATCGGACTCCAATCCGAAGTCGCAGCCTCCTCCGAAGAATGTCTCTCAGCCTGCCGAAGTCCCCGGCCTGAATGGCGCCGTCGAAGTTCCCCGGCCGGCCGCCTCTGTGACGGTCTTCGAGTTCGGCTCCGTCTCCTCTTCCTCCGATAAGGTCACTCTCGCCGGATACTGCCCCGTCTCCGACGACCTTGAGCCCTGCCGCTGGGAGATTCTGCCGGCAAGCGGCTCTGATGCGCCTCTTTTTCGCGTCGTCTTCTGA

mRNA sequence

ATGGGTCTCCTCTCATGGTGGAAAGGCCAACCTCCGCCATCGGACTCCAATCCGAAGTCGCAGCCTCCTCCGAAGAATGTCTCTCAGCCTGCCGAAGTCCCCGGCCTGAATGGCGCCGTCGAAGTTCCCCGGCCGGCCGCCTCTGTGACGGTCTTCGAGTTCGGCTCCGTCTCCTCTTCCTCCGATAAGGTCACTCTCGCCGGATACTGCCCCGTCTCCGACGACCTTGAGCCCTGCCGCTGGGAGATTCTGCCGGCAAGCGGCTCTGATGCGCCTCTTTTTCGCGTCGTCTTCTGA

Coding sequence (CDS)

ATGGGTCTCCTCTCATGGTGGAAAGGCCAACCTCCGCCATCGGACTCCAATCCGAAGTCGCAGCCTCCTCCGAAGAATGTCTCTCAGCCTGCCGAAGTCCCCGGCCTGAATGGCGCCGTCGAAGTTCCCCGGCCGGCCGCCTCTGTGACGGTCTTCGAGTTCGGCTCCGTCTCCTCTTCCTCCGATAAGGTCACTCTCGCCGGATACTGCCCCGTCTCCGACGACCTTGAGCCCTGCCGCTGGGAGATTCTGCCGGCAAGCGGCTCTGATGCGCCTCTTTTTCGCGTCGTCTTCTGA

Protein sequence

MGLLSWWKGQPPPSDSNPKSQPPPKNVSQPAEVPGLNGAVEVPRPAASVTVFEFGSVSSSSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF

Homology

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BLAST of Cla016143 vs. TrEMBL
Match: A0A0A0LF75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G910650 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-40
Identity = 82/99 (82.83%), Postives = 88/99 (88.89%), Query Frame = 1


Query: 1  MGLLSWWKGQPPPSDSNPKS-QPPPKNVSQPAEVPGLNGAVEVPRPAASVTVFEFGSVSS 60
          MGLLSWWKGQ PPSDS  K  QPPPKN+SQPAEVPGLNGA++VPR   SVT+FEFGSVSS
Sbjct: 1  MGLLSWWKGQSPPSDSTSKPPQPPPKNLSQPAEVPGLNGALQVPRLDTSVTIFEFGSVSS 60

Query: 61 SSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          SSDKVTL GYCPVSD+ EPCRWEILPAS S+APLFRVVF
Sbjct: 61 SSDKVTLTGYCPVSDEFEPCRWEILPASDSNAPLFRVVF 99

[Close]

BLAST of Cla016143 vs. TrEMBL
Match: A5BJC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00610 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.8e-33
Identity = 73/100 (73.00%), Postives = 79/100 (79.00%), Query Frame = 1


Query: 1  MGLLSWWKGQPPPSDSNPKSQPPPKNVSQPAEVPGLNGAVEVPRPAAS--VTVFEFGSVS 60
          MGLLSWWK    P+    K  P P     P E+PG+NGAVEVPRP A+  VTVFEFGSV+
Sbjct: 1  MGLLSWWKPSQKPTSETKKPDPKP---GSPPEIPGMNGAVEVPRPQATPDVTVFEFGSVA 60

Query: 61 SSSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          +SSDKVTLAGYCPVSDDLEPCRWEILPASGSDAP FRVVF
Sbjct: 61 ASSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPQFRVVF 97

[Close]

BLAST of Cla016143 vs. TrEMBL
Match: M5WEJ1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020908mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.2e-32
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1  MGLLSWWKGQPPPSDSNPKSQPPPKNVSQPAEVPGLNGAVEVPRPAASVTVFEFGSVSSS 60
          MGLLSWWKG+ P  ++ P   P PK    P E PG+NGAVEVPRPA ++TVFEFGSV++S
Sbjct: 1  MGLLSWWKGKDPKPETKPN--PAPK----PVEAPGMNGAVEVPRPA-NITVFEFGSVAAS 60

Query: 61 SDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          +D VTLAGYCPVS+DLEPCRWEILPASGSDAP FRVVF
Sbjct: 61 ADNVTLAGYCPVSEDLEPCRWEILPASGSDAPQFRVVF 91

[Close]

BLAST of Cla016143 vs. TrEMBL
Match: W9S5F9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023332 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.2e-32
Identity = 71/103 (68.93%), Postives = 80/103 (77.67%), Query Frame = 1


Query: 1  MGLLSWWKG-----QPPPSDSNPKSQPPPKNVSQPAEVPGLNGAVEVPRPAASVTVFEFG 60
          MG+LSWWKG     +      N KS P PK    P+EVPG+NGAVEVPRP  ++TVFEFG
Sbjct: 1  MGVLSWWKGSDNNKKQSQQSENSKSSPNPK----PSEVPGMNGAVEVPRPPPNITVFEFG 60

Query: 61 SVSSSSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          SV++S+DKVTLAGYCPVSDDLEPCRWEILPAS SDAP FRV F
Sbjct: 61 SVAASADKVTLAGYCPVSDDLEPCRWEILPASSSDAPQFRVAF 99

[Close]

BLAST of Cla016143 vs. TrEMBL
Match: A0A059C046_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00313 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.6e-31
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1  MGLLSWWKGQPPPSDSNPKSQPPPKNVSQPAEVPGLNGAVEVPRPAASVTVFEFGSVSSS 60
          MGLLSW+KG P P  S PK        S P+E PG+NGAVEVPR AA+VTVFEFGSV+++
Sbjct: 1  MGLLSWFKGSPKPQ-SEPKPSSALTAASSPSEAPGMNGAVEVPR-AANVTVFEFGSVAAT 60

Query: 61 SDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          +DKVTLAG+CPVSDDL+PCRWE+LPA+GSDAP FRVVF
Sbjct: 61 ADKVTLAGFCPVSDDLKPCRWEVLPAAGSDAPQFRVVF 96

[Close]

BLAST of Cla016143 vs. NCBI nr
Match: gi|659131927|ref|XP_008465928.1| (PREDICTED: uncharacterized protein LOC103503504 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 4.4e-43
Identity = 86/99 (86.87%), Postives = 92/99 (92.93%), Query Frame = 1


Query: 1  MGLLSWWKGQPPPSDSNPKS-QPPPKNVSQPAEVPGLNGAVEVPRPAASVTVFEFGSVSS 60
          MGLLSWWKGQ PPSDS  K  QPP KN+SQPAEVPGLNGA+EVPRPAASVTVFEFGSV++
Sbjct: 1  MGLLSWWKGQSPPSDSTSKPPQPPSKNLSQPAEVPGLNGALEVPRPAASVTVFEFGSVTA 60

Query: 61 SSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          SSDKVTLAGYCPVSDD EPCRWEI+PASGSDAPLFR+VF
Sbjct: 61 SSDKVTLAGYCPVSDDFEPCRWEIMPASGSDAPLFRIVF 99

[Close]

BLAST of Cla016143 vs. NCBI nr
Match: gi|778688071|ref|XP_011652671.1| (PREDICTED: uncharacterized protein LOC101203507 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 6.0e-40
Identity = 82/99 (82.83%), Postives = 88/99 (88.89%), Query Frame = 1


Query: 1  MGLLSWWKGQPPPSDSNPKS-QPPPKNVSQPAEVPGLNGAVEVPRPAASVTVFEFGSVSS 60
          MGLLSWWKGQ PPSDS  K  QPPPKN+SQPAEVPGLNGA++VPR   SVT+FEFGSVSS
Sbjct: 1  MGLLSWWKGQSPPSDSTSKPPQPPPKNLSQPAEVPGLNGALQVPRLDTSVTIFEFGSVSS 60

Query: 61 SSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          SSDKVTL GYCPVSD+ EPCRWEILPAS S+APLFRVVF
Sbjct: 61 SSDKVTLTGYCPVSDEFEPCRWEILPASDSNAPLFRVVF 99

[Close]

BLAST of Cla016143 vs. NCBI nr
Match: gi|1009157419|ref|XP_015896751.1| (PREDICTED: uncharacterized protein LOC107430432 [Ziziphus jujuba])

HSP 1 Score: 149.1 bits (375), Expect = 4.2e-33
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 1


Query: 1  MGLLSWWKGQPPPSDSNPKSQPPPKNVSQPAEVPGLNGAVEVPRP--AASVTVFEFGSVS 60
          MGL SWW+G+ P  D+ P   P      +P EVPG+NGA+EVPRP  AA++TVFEFGSV+
Sbjct: 1  MGLFSWWRGKQPQPDNKPAPNP------KPTEVPGMNGALEVPRPPAAANITVFEFGSVA 60

Query: 61 SSSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          +SSDKVTLAGYCPVSDDLEPCRWEILPA+GSDAP FRVVF
Sbjct: 61 ASSDKVTLAGYCPVSDDLEPCRWEILPATGSDAPQFRVVF 94

[Close]

BLAST of Cla016143 vs. NCBI nr
Match: gi|225427308|ref|XP_002282023.1| (PREDICTED: uncharacterized protein LOC100253981 [Vitis vinifera])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 73/100 (73.00%), Postives = 79/100 (79.00%), Query Frame = 1


Query: 1  MGLLSWWKGQPPPSDSNPKSQPPPKNVSQPAEVPGLNGAVEVPRPAAS--VTVFEFGSVS 60
          MGLLSWWK    P+    K  P P     P E+PG+NGAVEVPRP A+  VTVFEFGSV+
Sbjct: 1  MGLLSWWKPSQKPTSETKKPDPKP---GSPPEIPGMNGAVEVPRPQATPDVTVFEFGSVA 60

Query: 61 SSSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          +SSDKVTLAGYCPVSDDLEPCRWEILPASGSDAP FRVVF
Sbjct: 61 ASSDKVTLAGYCPVSDDLEPCRWEILPASGSDAPQFRVVF 97

[Close]

BLAST of Cla016143 vs. NCBI nr
Match: gi|645246840|ref|XP_008229540.1| (PREDICTED: uncharacterized protein LOC103328906 [Prunus mume])

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-32
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 1


Query: 1  MGLLSWWKGQPPPSDSNPKSQPPPKNVSQPAEVPGLNGAVEVPRPAASVTVFEFGSVSSS 60
          MGLLSWWKG+ P  ++ P   P PK    P EVPG+NGAVEVPRPA ++TVFEFGSV++S
Sbjct: 1  MGLLSWWKGKDPKPETKPN--PAPK----PVEVPGMNGAVEVPRPA-NITVFEFGSVAAS 60

Query: 61 SDKVTLAGYCPVSDDLEPCRWEILPASGSDAPLFRVVF 99
          +D VTLAGYCPVS+DLEPCRWEILPASGSDAP FRVVF
Sbjct: 61 ADNVTLAGYCPVSEDLEPCRWEILPASGSDAPQFRVVF 91

The following BLAST results are available for this feature:

BLAST of Cla016143 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF75_CUCSA	4.2e-40	82.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G910650 PE=4 SV=1	[more]
A5BJC2_VITVI	3.8e-33	73.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00610 PE=4 SV=...	[more]
M5WEJ1_PRUPE	3.2e-32	72.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020908mg PE=4 SV=1	[more]
W9S5F9_9ROSA	3.2e-32	68.93	Uncharacterized protein OS=Morus notabilis GN=L484_023332 PE=4 SV=1	[more]
A0A059C046_EUCGR	4.6e-31	70.41	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00313 PE=4 SV=1	[more]

BLAST of Cla016143 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131927\|ref\|XP_008465928.1\|	4.4e-43	86.87	PREDICTED: uncharacterized protein LOC103503504 [Cucumis melo]	[more]
gi\|778688071\|ref\|XP_011652671.1\|	6.0e-40	82.83	PREDICTED: uncharacterized protein LOC101203507 [Cucumis sativus]	[more]
gi\|1009157419\|ref\|XP_015896751.1\|	4.2e-33	71.00	PREDICTED: uncharacterized protein LOC107430432 [Ziziphus jujuba]	[more]
gi\|225427308\|ref\|XP_002282023.1\|	5.4e-33	73.00	PREDICTED: uncharacterized protein LOC100253981 [Vitis vinifera]	[more]
gi\|645246840\|ref\|XP_008229540.1\|	1.6e-32	73.47	PREDICTED: uncharacterized protein LOC103328906 [Prunus mume]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016491	oxidoreductase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU15522	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU20713	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU30918	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU38729	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU75517	watermelon EST collection version 2.0	transcribed_cluster
WMU75733	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016143	Cla016143.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU15522	WMU15522	transcribed_cluster
WMU30918	WMU30918	transcribed_cluster
WMU75517	WMU75517	transcribed_cluster
WMU20713	WMU20713	transcribed_cluster
WMU38729	WMU38729	transcribed_cluster
WMU75733	WMU75733	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016143	Cla97C09G175210	Watermelon (97103) v2	wmwmbB041
Cla016143	Csa3G910650	Cucumber (Chinese Long) v2	cuwmB180
Cla016143	MELO3C003373	Melon (DHL92) v3.5.1	mewmB342
Cla016143	CSPI03G47100	Wild cucumber (PI 183967)	cpiwmB183
Cla016143	Cucsa.313500	Cucumber (Gy14) v1	cgywmB561
Cla016143	CmaCh19G004410	Cucurbita maxima (Rimu)	cmawmB476
Cla016143	CmoCh19G004490	Cucurbita moschata (Rifu)	cmowmB469
Cla016143	Lsi05G000500	Bottle gourd (USVL1VR-Ls)	lsiwmB347
Cla016143	Cp4.1LG15g03380	Cucurbita pepo (Zucchini)	cpewmB240
Cla016143	CsGy3G044490	Cucumber (Gy14) v2	cgybwmB170
Cla016143	MELO3C003373.2	Melon (DHL92) v3.6.1	medwmB340
Cla016143	CsaV3_3G049530	Cucumber (Chinese Long) v3	cucwmB192
Cla016143	Bhi05G000361	Wax gourd	wgowmB252

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016143	Silver-seed gourd	carwmB0560
Cla016143	Silver-seed gourd	carwmB0702
Cla016143	Silver-seed gourd	carwmB0776
Cla016143	Cucumber (Chinese Long) v3	cucwmB193
Cla016143	Cucumber (Chinese Long) v3	cucwmB199
Cla016143	Watermelon (97103) v2	wmwmbB009
Cla016143	Wax gourd	wgowmB004
Cla016143	Wax gourd	wgowmB168
Cla016143	Wax gourd	wgowmB242
Cla016143	Watermelon (97103) v1	wmwmB007
Cla016143	Watermelon (97103) v1	wmwmB020
Cla016143	Cucumber (Gy14) v1	cgywmB582
Cla016143	Cucurbita maxima (Rimu)	cmawmB290
Cla016143	Cucurbita maxima (Rimu)	cmawmB547
Cla016143	Cucurbita maxima (Rimu)	cmawmB779
Cla016143	Cucurbita moschata (Rifu)	cmowmB283
Cla016143	Cucurbita moschata (Rifu)	cmowmB537
Cla016143	Cucurbita moschata (Rifu)	cmowmB773
Cla016143	Wild cucumber (PI 183967)	cpiwmB184
Cla016143	Melon (DHL92) v3.5.1	mewmB444
Cla016143	Cucumber (Chinese Long) v2	cuwmB187
Cla016143	Watermelon (Charleston Gray)	wcgwmB007
Cla016143	Watermelon (Charleston Gray)	wcgwmB045
Cla016143	Cucumber (Chinese Long) v2	cuwmB181
Cla016143	Cucurbita pepo (Zucchini)	cpewmB200
Cla016143	Cucurbita pepo (Zucchini)	cpewmB684
Cla016143	Bottle gourd (USVL1VR-Ls)	lsiwmB424
Cla016143	Cucumber (Gy14) v2	cgybwmB176
Cla016143	Cucumber (Gy14) v2	cgybwmB171
Cla016143	Melon (DHL92) v3.6.1	medwmB430
Cla016143	Melon (DHL92) v3.6.1	medwmB431