CmoCh19G000620 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G000620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Histone H1 subtype 5
Location	Cmo_Chr19 : 357406 .. 363753 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTCATATAGCTCTCTCGTTTCTCTAGATCCCAATTTTTGTTCCGATCATCTTTCCATTTCTGAATTCTACTTCTGGTTTGTGGAATTTGATCTTGTTTCTACATCAATGGCTACTGAGGAGCCAGTTTTGGCGGTGGAGTCTGCGGCAGAGCCGGCCAACGCCGAACCAGCCGGAGAAAGTCCTGTGAAAAAGGCCGCGAAGTCGAAGAAATCCAAAGAATCGAAAGAGAAGAAGCCTGCTGCGCCTAAAAGATCTAGAAATCCCCCAACTCATCCTCCATATGAAGAGGTGTGTTGCTGAATTGGGTTTGGAGTTTAAAACATAATTTTCTTTCGGATTCATGTTTGGTGTAATGGATCTGTTTTGTTGATTTGGTTTGATGTTTTGATTTCAGATGATTAAGGATGCGATTGTCACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATTACGAAATTCATTGAGGAGAAGCAGAAGCAACTTCCTCCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTTGCTTCCGGGAAGCTGGTGAAGGTTAAGAGCTCGTTCAAGCTTCTCCCAGCGAAATTGGCAGCTTCGAAGCCTGCTTCTCCTGCGAAGAAGAAGCCTGTTGCTGCCAAGCCGAAACCTAAAGCGGCGGTGAAGACCAAGGCTGTGGCTAAACCGGCAGCAAAGCCGAAACCGGCAGCGAAGCCGAAGCCCAAGACGGCTGCTAAACCCAAGGCTGCTCCTAAGCCTAAACCTAAACCTGCTCCCGCCAAGGCAAAGAGCAGTGCGGTTGCGAAGCCGAAAGCTGCAGCGAAGACTAAAGCTGCTCCCAAGCCGAAAGCCAAGGAGAATCCCGCCAAGGTTGCTAGGACATCCACGAGGTCCTCACCAGGGAATAAGGCACCTGTTCCCAAACCGGTGGTGAAGAAAGCACCGGTGGCCAAGAAGGCTCCGGCGAAAAGTGTTAAGTCTAAGAAAGTGAAATCGCCGGCGAGAAAGGCTCCGGCAAGAAGAGGAAGGAAGTAAATGAGATAGAAGGAAAACTAGCGGCGGTCCTGTAAATCCGTTATCCTTGTGTGGGTGTACAGAGCCTTACATCCCATGCTATAGAGGAGTTTACTTCAGACTTTTCGAGTTTCTTTTACTTGTTTACTTGTAGACCTTTTTCCCAAGTTGATGTATCACTCAGCTTAGTTTTTAATGGAAATTCTGTGATCAATTAGGAGCGTCAATTTCAGTTTTCAACCCATGATTTCTACGGCCAGTCCGACTGCATCAATTATCTGGAAACGTTCCGTATCTCTTACGCTAGAAATGGATATGGATTGCTTAATCGAAGTTTGAAGCTTGGTTGCTAAGCTTGGTAAATCTCGATCTTTCTTGTACTTCTCGCCCTCATATCTGTCTACGATGATTTCAAAGCGTATTTAATTCATTAGCTAGCTGTATTTGGTCATTGCTTAGATAGGTTGATTGGTTGATAGAGTTTGATCATACCCGTTCATCCCTTTTGCGATATGATTTATCATCTTTCTCATTATGTTTGGTATAATCTTACTGATGTTTGCATTATTTCTCCCTTACAGATTGTTAGGTTTTTCGTGCTTGGATAGGTCACTGAGTGAGAAGCTATCATTATCGTATAAAATCATGAAGGTTATAAGACTGCTTAATAAATCTATTTGGGTATTTGATTTGGGTATTTGTTGAGGATGGTTGGGAGGGAGTCACACGAGTTTAGAAGTAAGGAAGGAATGTCTCTATTGGTCTGAGGTCTTTTGGGAAAACCAAAAGCAAAGCCAAAGCCATGGGAGTTTATGCTCAAAGTGGACAATATCATACTATTGTGGAAAATCGTTATTCCTAACATGGTATCGATTTTGGTCTTATTCAACATAGTCTAACACCCACGAGAGTTTATGCTCAGAGTGGACAATATTATATTGTGGAGAGTCGTTATTTCTAACCTGGTATAGAGTCATGCCCTTAACTTAGCCATGTCAAAAGAATCCTCAAATGTCGAACAAAGAAGTTGTGAGCCTCGAAAGTATAGTTAAAAGTGACTTAAGTGTTGAACAAATGGTGTACTTTGTTCGAGGACTCCAGAGGAGTCGAGCCTCGATTAAGGGGAGGTTGTTCGAGGGCTCCATAGTCTTAGGGAAGGTTCTGTAATGTACTTTGTTCGAGGAGAGGATTGTTGGAAGAGAATCCCAGCTAATTTAGGGAATGATCATGAGTGGTTTTCTAATTCTACACTTGATTTTTGTTTGGATGGACCAATTTTCATGTAACTCAATAGACAAACATCTCTTGCTGCTTGCTTGATTGTATAGGTAGATGTCACTATGGCTTGAATTCATTCCTTCCTAAACTTCATATTTATTAGAATTTTCAGGATAATCTGTCAAGTATATGTGTTTTTTCCTCTAGGACTTTCTGTTAGGATATTTGTCGGGTCAAGTTGACTACATATCGTAGTCTTTTTGCTCGGAGTAGTAACAAATTAGGAGAGGGAACTTATCATTTAGTAACGAATTTCCTGCATACAGTAAAGGGGGAAATTCTAGGGAGTCAGTGGCTTACATGTATAAGGAAGGTATTTAGGAGAACGAATGTACTAATGAATCAGAAGGCATTGTTAATGGGTGGAGAATTCTGCTGTACATTCTACCTCGAATCTCTTCAATTCATGTGTGAGAACAAATTTGGGTAGAAAGATTTTTATATGAAAACCAATTTGGTATATAGGAGGAGAATCCATTAACCAGAACTTTTGCCATCTTTTCTGTTATCTATTCCAAATGGATGTTCGGTGTAGGTTAGCAAGGTCGATTCGTTCTATAACTACTCATGCAGGTCACCTACTAGGATATCTATGGATTACTAGGATTCAATAACTTAGCTGCTATCAATGTTATTACTCCTGAGTTGTTCTGAAGGCTCAAAGAAGATTAATTAAGTCTTCTGTACTTTCTCATTGGCCTTAGTACATGTGATTGAATTGAAAAGAAGATCCGTCTTGCTTTCTCTCTCTCTTTCTCCCTCTGGGTTGGATTTGTGTGTGCAGAGATGTCGAGGATTCAGATCGTTTTATTTTGTTTTGGTGCCATTTTGATATCCTTAGTCTGAGGAAGCTCCATATTAAGTTTATGATATGGCTCTTTGGAACCGTACTTTTGGCGATGTTTCTGGATATAGCAGCGCCATCCTGTAAGATTAGGAGATTTCCTATCAGGTTGTGATATATGAGATTAATTTGTTAAATCATGGTCACTCTTTTAAGAGGATATTATGAATTGGTGGATTTGCTGCTGTTTGAAGAGCATGGTTGAGAGATGTGCTTTATTTTTGGCTAAATCACTAGGAATGCTCATGTAAGATCGTTCTTTGCTGTGTTGAGCAAGTCCTTCGGGCTTTAAGACCTCGGTTCGATTTGGTGCAATCATCTGTAACTATTAGGTTCTAACGTTCAACTAGGATGATTTAAAGTTACATAATCGTATTAGCTTGCATCATCCTTCTTTAGTCTACTGTTAGGAATCATGAACCTTCATAATGATATGATATTGTCCACGTTGAGCATAACCTCTTATGGCTTTGTTTTTGGTTTCCTCAAAAGGACTCGTACTAATGGAGATGTATTCCTTACTTATAAACTTGTGATCAACCTCCCAACAATCCTCAACAATTCTCCCCTCGAACAAAATACAACATAGAGACTTCCCTGAGGCGTATGGAGCTCTCGAATAGTCTCTCCTTAATCGAGGTTCGACTCCTTCTCTGGAGCCCTCTAACAAAGTACACTCTCTGTTCGACACTTGAGTCACTTTTGACTACACATTTGAGTTTCACAATTTCTTTGTTCGACACTTGAGGATTCTATTGATATGACTAAGTTAAGGGCATGACTCTGATACCATATTAGGAATCACGAATCTCACAATGGTATGATATTGTCCACTTTGAGCTTAAGCTCATGACGTGTGCTTTTGGTTTCTCTAAAAGGCTTCATACCAATAGAGATGTATTCCTTACTTATAAACCCATGATCAACCTTTAATTAGTCAAGGTGGGACCCCTCTCCCGACGATCCTCAATAACTGCTTCCTCCCTCCATCATTTCGCCGTCTCCCGTCCCCTTCAAGTGATGTGCAGACATGTGTAGCTGCAATATTTTGTACGTGTTCGTGATTTGTACAAAGCAATAATTGAACAGATTGACCATTTCTTATTTGGCACAATTCAGTAAATAATAAAAGTTTATTTATTCATTTTTTGTTTTGAATCCCTTTTAACTTCCTACAGGCGTTTAGCATTGTTATAATTTCTGCTGCCACCGTGAGAGCATCAAAATGGTAAATAACTCATGCTTGTTCACAGTGTCATATAATGTACGCCGGCATGTTTGCTTTTGCTATCTGTACGTTTATGACAATCTTGCATCCTCTTTGTTGGCATCTGTGTGTGTCTATTTCTCTTGTACGGCACGGCGTTCAGCCCCTTTGATTTCCTTAATTGTGTTGTGGTTTTTATATCCCACCTCTGCAAACTGTTTTATCCTTGAGAAGCATCGGTAATTATATTTGAATTGATTACACAATTTTCCTCTTTCCTTCAGAGCGATAAATTGAAGCCAGAATTTCTCCATCGAAATATTACATTTTCCATGTGGCCAAACCCCAGAATGTTTGAGGAGAGCCTATCATCCTACAACCTTGGCAGGGAGCTGCTTCATATTCCCCATGGAATAACCTGGAAAATTTCTCCCTAATATCCCCACGCGAGATGGTTTGTTGTAAGTCCATATTCTCATTTATTTTGGTGATTAACTCTTATTTAGTTCATAACCATTTTGGTTCATATTTTATATTTTTTTATTCATGTATGTGCATTAATATTGGTATGCCTATATAAAAGTTTGTCTAGCATTGTTTTGAGACATGGACCCATTACCATTTTGTATTTGCTTAGAGATAATTGGGAGAAACTTTGTTGAGAGACTTTTCCGTGTGAGAGATACACTTGTAAACACTTTGTTATAATGACTGGCTTAACTTAGGGATGTAGGAGAATTTTCTCTCTGAACCATGTAAATCTTTGTACCTTTGTTTAATTTCTGTTTGTAGGTGTGTGAGTGCGATCGATCTTGCTTCTGCTTTCGCTACAACAATCGGATATTGGAGCATTGAAGGTTGTGGCATTAGGATATTTCTCAATGGGTTAATAGGAGGAAAATGTTTTCTTTAGCCATTGAATTCTCTATTTGCTTTGCGGATGGTTTTCATATGAGCCATCATGACAAATAATAGGCTTCACATGAGGGTAATGGTTTGAATTGTTATCTAGTTATTACCAATGTTCAATAGTTTCAAGTGGTACACGCATCACCTATGGTCACCCGATGTTACGGGTTGTCTAGGTAGACTGCAAGCTGCCATATGGATTGCTTAGAGATTGTGTTATTTACTACCTCATCATTGTAACCAGTTGGTAGTTAAGGTCTCATGGGTACATGGGTAGGATTTGGTGACTTAACGGCGAGCCTCAAAAGTTTGCTAGCTTCTTGTGATTGGTTTAGTCGGTATTTTATTAGGTTTATCTTTAGTCGGTATTTCTCTTTACATATTCTCTCTTTTGTTCTTCACGTTTTTCATTTAGATTGAGCGTGTAAGTTATACGATCCTTGGTCCTAACAATTTTGGAATGATTTTAGTATTTTTAAAACCACTTCAAACAATAATATTTTTCAGATCTCTATTCTTGTTCGAGGATGCCTAAAATGATGAATATGGAGGGGACAAGAAGTTTGATGTTCATGGTAACATTTCATGATTTTCATCCCTCTGTTGCTCTCAATCATTAATTTTGAATCTGTTCTCTAGAGAAAAAACATGAACATGAAGCATTTTGTCTTCTGCAGAAAGAAAAAGAAAAAAAAAAAAAAAATTCTGTATTGTTTTGTTGTAGGAAAATGGAGAAGAAACTGTTATTTTCAGATGGGATGATGTCAAACTTGAAATGATGAAAAAGTTTGGTTCACAAAATGCCATGAATTCTGTTAGGGTTCGTAGATTCGTGCAGTTGTATTCATTGATCTACGATAAACTAATTTGGTTATCCTATTCACAGCGACCTCATTTCTACACAAGTTGTATCACTGGATTTGTTCAGTCGAGTTGTCAAAGGGTGATTTGTTTTGTCGGGTTGTCAAAGGGTGATTTATGCTAACATGACCGGAACTGGAGTCTCAGATTTTGCAGTTTCATGGCTGCATATTCAGTCAAGCACATGAGACTGAGTCGACTATACTTGAGCTCGAGAAAGATTATTTATT

mRNA sequence

CATTTCATATAGCTCTCTCGTTTCTCTAGATCCCAATTTTTGTTCCGATCATCTTTCCATTTCTGAATTCTACTTCTGGTTTGTGGAATTTGATCTTGTTTCTACATCAATGGCTACTGAGGAGCCAGTTTTGGCGGTGGAGTCTGCGGCAGAGCCGGCCAACGCCGAACCAGCCGGAGAAAGTCCTGTGAAAAAGGCCGCGAAGTCGAAGAAATCCAAAGAATCGAAAGAGAAGAAGCCTGCTGCGCCTAAAAGATCTAGAAATCCCCCAACTCATCCTCCATATGAAGAGATGATTAAGGATGCGATTGTCACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATTACGAAATTCATTGAGGAGAAGCAGAAGCAACTTCCTCCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTTGCTTCCGGGAAGCTGGTGAAGGTTAAGAGCTCGTTCAAGCTTCTCCCAGCGAAATTGGCAGCTTCGAAGCCTGCTTCTCCTGCGAAGAAGAAGCCTGTTGCTGCCAAGCCGAAACCTAAAGCGGCGGTGAAGACCAAGGCTGTGGCTAAACCGGCAGCAAAGCCGAAACCGGCAGCGAAGCCGAAGCCCAAGACGGCTGCTAAACCCAAGGCTGCTCCTAAGCCTAAACCTAAACCTGCTCCCGCCAAGGCAAAGAGCAGTGCGGTTGCGAAGCCGAAAGCTGCAGCGAAGACTAAAGCTGCTCCCAAGCCGAAAGCCAAGGAGAATCCCGCCAAGGTTGCTAGGACATCCACGAGGTCCTCACCAGGGAATAAGGCACCTGTTCCCAAACCGGTGGTGAAGAAAGCACCGGTGGCCAAGAAGGCTCCGGCGAAAAGTGTTAAGTCTAAGAAAGTGAAATCGCCGGCGAGAAAGGCTCCGGCAAGAAGAGGAAGGAAGTAAATGAGATAGAAGGAAAACTAGCGGCGGTCCTGTAAATCCGTTATCCTTGTGTGGGTGTACAGAGCCTTACATCCCATGCTATAGAGGAGTTTACTTCAGACTTTTCGAGTTTCTTTTACTTGTTTACTTGTAGACCTTTTTCCCAAGTTGATGTATCACTCAGCTTAGTTTTTAATGGAAATTCTGTGATCAATTAGGAGCGTCAATTTCAGTTTTCAACCCATGATTTCTACGGCCAGTCCGACTGCATCAATTATCTGGAAACGTTCCGTATCTCTTACGCTAGAAATGGATATGGATTGCTTAATCGAAGTTTGAAGCTTGGTTGCTAAGCTTGGTAAATCTCGATCTTTCTTGTACTTCTCGCCCTCATATCTGTCTACGATGATTTCAAAGCGTATTTAATTCATTAGCTAGCTGTATTTGGTCATTGCTTAGATAGGTTGATTGGTTGATAGAGTTTGATCATACCCGTTCATCCCTTTTGCGATATGATTTATCATCTTTCTCATTATGTTTGGTATAATCTTACTGATGTTTGCATTATTTCTCCCTTACAGATTGTTAGGTTTTTCGTGCTTGGATAGGTCACTGAGTGAGAAGCTATCATTATCGTATAAAATCATGAAGGTTATAAGACTGCTTAATAAATCTATTTGGGTATTTGATTTGGGTATTTGTTGAGGATGGTTGGGAGGGAGTCACACGAGTTTAGAAGTAAGGAAGGAATGTCTCTATTGGTCTGAGGTCTTTTGGGAAAACCAAAAGCAAAGCCAAAGCCATGGGAGTTTATGCTCAAAGTGGACAATATCATACTATTGTGGAAAATCGTTATTCCTAACATGGTATCGATTTTGGTCTTATTCAACATAGTCTAACACCCACGAGAGTTTATGCTCAGAGTGGACAATATTATATTGTGGAGAGTCGTTATTTCTAACCTGGTATAGAGTCATGCCCTTAACTTAGCCATGTCAAAAGAATCCTCAAATGTCGAACAAAGAAGTTGTGAGCCTCGAAAGTATAGTTAAAAGTGACTTAAGTGTTGAACAAATGGTGTACTTTGTTCGAGGACTCCAGAGGAGTCGAGCCTCGATTAAGGGGAGGTTGTTCGAGGGCTCCATAGTCTTAGGGAAGGTTCTGTAATGTACTTTGTTCGAGGAGAGGATTGTTGGAAGAGAATCCCAGCTAATTTAGGGAATGATCATGAGTGGTTTTCTAATTCTACACTTGATTTTTGTTTGGATGGACCAATTTTCATGTAACTCAATAGACAAACATCTCTTGCTGCTTGCTTGATTGTATAGGTAGATGTCACTATGGCTTGAATTCATTCCTTCCTAAACTTCATATTTATTAGAATTTTCAGGATAATCTGTCAAGTATATGTGTTTTTTCCTCTAGGACTTTCTGTTAGGATATTTGTCGGGTCAAGTTGACTACATATCGTAGTCTTTTTGCTCGGAGTAGTAACAAATTAGGAGAGGGAACTTATCATTTAGTAACGAATTTCCTGCATACAGTAAAGGGGGAAATTCTAGGGAGTCAGTGGCTTACATGTATAAGGAAGGTATTTAGGAGAACGAATGTACTAATGAATCAGAAGGCATTGTTAATGGGTGGAGAATTCTGCTGTACATTCTACCTCGAATCTCTTCAATTCATGTGTGAGAACAAATTTGGGTAGAAAGATTTTTATATGAAAACCAATTTGGTATATAGGAGGAGAATCCATTAACCAGAACTTTTGCCATCTTTTCTGTTATCTATTCCAAATGGATGTTCGGTGTAGGTTAGCAAGGTCGATTCGTTCTATAACTACTCATGCAGGTCACCTACTAGGATATCTATGGATTACTAGGATTCAATAACTTAGCTGCTATCAATGTTATTACTCCTGAGTTGTTCTGAAGGCTCAAAGAAGATTAATTAAGTCTTCTGTACTTTCTCATTGGCCTTAGTACATGTGATTGAATTGAAAAGAAGATCCGTCTTGCTTTCTCTCTCTCTTTCTCCCTCTGGGTTGGATTTGTGTGTGCAGAGATGTCGAGGATTCAGATCGTTTTATTTTGTTTTGGTGCCATTTTGATATCCTTAGTCTGAGGAAGCTCCATATTAAGTTTATGATATGGCTCTTTGGAACCGTACTTTTGGCGATGTTTCTGGATATAGCAGCGCCATCCTGTAAGATTAGGAGATTTCCTATCAGGTTGTGATATATGAGATTAATTTGTTAAATCATGGTCACTCTTTTAAGAGGATATTATGAATTGGTGGATTTGCTGCTGTTTGAAGAGCATGGTTGAGAGATGTGCTTTATTTTTGGCTAAATCACTAGGAATGCTCATGTAAGATCGTTCTTTGCTGTGTTGAGCAAGTCCTTCGGGCTTTAAGACCTCGGTTCGATTTGGTGCAATCATCTGTAACTATTAGGTTCTAACGTTCAACTAGGATGATTTAAAGTTACATAATCGTATTAGCTTGCATCATCCTTCTTTAGTCTACTGTTAGGAATCATGAACCTTCATAATGATATGATATTGTCCACGTTGAGCATAACCTCTTATGGCTTTGTTTTTGGTTTCCTCAAAAGGACTCGTACTAATGGAGATGTATTCCTTACTTATAAACTTGTGATCAACCTCCCAACAATCCTCAACAATTCTCCCCTCGAACAAAATACAACATAGAGACTTCCCTGAGGCGTATGGAGCTCTCGAATAGTCTCTCCTTAATCGAGGTTCGACTCCTTCTCTGGAGCCCTCTAACAAAGTACACTCTCTGTTCGACACTTGAGTCACTTTTGACTACACATTTGAGTTTCACAATTTCTTTGTTCGACACTTGAGGATTCTATTGATATGACTAAGTTAAGGGCATGACTCTGATACCATATTAGGAATCACGAATCTCACAATGGTATGATATTGTCCACTTTGAGCTTAAGCTCATGACGTGTGCTTTTGGTTTCTCTAAAAGGCTTCATACCAATAGAGATGTATTCCTTACTTATAAACCCATGATCAACCTTTAATTAGTCAAGGTGGGACCCCTCTCCCGACGATCCTCAATAACTGCTTCCTCCCTCCATCATTTCGCCGTCTCCCGTCCCCTTCAAGTGATGTGCAGACATGTGTAGCTGCAATATTTTGCGTTTAGCATTGTTATAATTTCTGCTGCCACCGTGAGAGCATCAAAATGAGCGATAAATTGAAGCCAGAATTTCTCCATCGAAATATTACATTTTCCATGTGGCCAAACCCCAGAATGTTTGAGGAGAGCCTATCATCCTACAACCTTGGCAGGGAGCTGCTTCATATTCCCCATGGAATAACCTGGAAAATTTCTCCCTAATATCCCCACGCGAGATGGTTTGTTGTGTGTGAGTGCGATCGATCTTGCTTCTGCTTTCGCTACAACAATCGGATATTGGAGCATTGAAGGTTGTGGCATTAGGATATTTCTCAATGGGTTAATAGGAGGAAAATGTTTTCTTTAGCCATTGAATTCTCTATTTGCTTTGCGGATGGTTTTCATATGAGCCATCATGACAAATAATAGGCTTCACATGAGGGTAATGGTTTGAATTGTTATCTAGTTATTACCAATGTTCAATAGTTTCAAGTGGTACACGCATCACCTATGGTCACCCGATGTTACGGGTTGTCTAGGTAGACTGCAAGCTGCCATATGGATTGCTTAGAGATTGTGTTATTTACTACCTCATCATTGTAACCAGTTGGTAGTTAAGGTCTCATGGGTACATGGGTAGGATTTGGTGACTTAACGGCGAGCCTCAAAAGTTTGCTAGCTTCTTGTGATTGGTTTAGTCGGTATTTTATTAGGTTTATCTTTAGTCGGTATTTCTCTTTACATATTCTCTCTTTTGTTCTTCACGTTTTTCATTTAGATTGAGCGTGTAAGTTATACGATCCTTGGTCCTAACAATTTTGGAATGATTTTAGTATTTTTAAAACCACTTCAAACAATAATATTTTTCAGATCTCTATTCTTGTTCGAGGATGCCTAAAATGATGAATATGGAGGGGACAAGAAGTTTGATGTTCATGCGACCTCATTTCTACACAAGTTGTATCACTGGATTTGTTCAGTCGAGTTGTCAAAGGGTGATTTGTTTTGTCGGGTTGTCAAAGGGTGATTTATGCTAACATGACCGGAACTGGAGTCTCAGATTTTGCAGTTTCATGGCTGCATATTCAGTCAAGCACATGAGACTGAGTCGACTATACTTGAGCTCGAGAAAGATTATTTATT

Coding sequence (CDS)

ATGGCTACTGAGGAGCCAGTTTTGGCGGTGGAGTCTGCGGCAGAGCCGGCCAACGCCGAACCAGCCGGAGAAAGTCCTGTGAAAAAGGCCGCGAAGTCGAAGAAATCCAAAGAATCGAAAGAGAAGAAGCCTGCTGCGCCTAAAAGATCTAGAAATCCCCCAACTCATCCTCCATATGAAGAGATGATTAAGGATGCGATTGTCACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATTACGAAATTCATTGAGGAGAAGCAGAAGCAACTTCCTCCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTTGCTTCCGGGAAGCTGGTGAAGGTTAAGAGCTCGTTCAAGCTTCTCCCAGCGAAATTGGCAGCTTCGAAGCCTGCTTCTCCTGCGAAGAAGAAGCCTGTTGCTGCCAAGCCGAAACCTAAAGCGGCGGTGAAGACCAAGGCTGTGGCTAAACCGGCAGCAAAGCCGAAACCGGCAGCGAAGCCGAAGCCCAAGACGGCTGCTAAACCCAAGGCTGCTCCTAAGCCTAAACCTAAACCTGCTCCCGCCAAGGCAAAGAGCAGTGCGGTTGCGAAGCCGAAAGCTGCAGCGAAGACTAAAGCTGCTCCCAAGCCGAAAGCCAAGGAGAATCCCGCCAAGGTTGCTAGGACATCCACGAGGTCCTCACCAGGGAATAAGGCACCTGTTCCCAAACCGGTGGTGAAGAAAGCACCGGTGGCCAAGAAGGCTCCGGCGAAAAGTGTTAAGTCTAAGAAAGTGAAATCGCCGGCGAGAAAGGCTCCGGCAAGAAGAGGAAGGAAGTAA

Homology

[Close]

BLAST of CmoCh19G000620 vs. Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.0e-49
Identity = 174/294 (59.18%), Postives = 193/294 (65.65%), Query Frame = 1


Query: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPV+  E   E A  E   +     A   K  KE+K KKPAAP++    PTHPPY 
Sbjct: 1   MATEEPVIVNEVVEEQAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYF 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQ+AITKFIEEKQK LP NFKKLLL  LKK VAS KLVKVK+S+
Sbjct: 61  EMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSY 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAK----PKPKAAVKTK----AVAKPAAKPKPAAKPKPK 180
           K LP+    +  A PAKKKP AAK     KPKAAVK K    A AKPAAK KPAAK KP 
Sbjct: 121 K-LPSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAKPA 180

Query: 181 TAAKP--KAAPKPKPKP-APAKAKSSAVAKPKAA-------AKTKAAPKP--KAKENPAK 240
             AKP  KA P  K KP A AK K++A AKPKAA       AKTKAA KP  KAK   AK
Sbjct: 181 AKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAK 240

Query: 241 VARTSTRSSPGNKAPVPKPVVKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           VA+T+TR++P  KA        KA  AKK P K   +K VKSPA+KA  +RGRK
Sbjct: 241 VAKTATRTTPSRKA------APKATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

[Close]

BLAST of CmoCh19G000620 vs. Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.8e-47
Identity = 158/282 (56.03%), Postives = 181/282 (64.18%), Query Frame = 1


Query: 1   MATEEPVLAVESAAEPANAEPAG---------ESPVKKAAKSKKSKESKEKKPAAPKRSR 60
           MATEEP++AVE+  EP   EP           E P  +  K+KK+K SK KK + P   R
Sbjct: 1   MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKP---R 60

Query: 61  NPPTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASG 120
           NP +HP YEEMIKDAIV+LKE+ GSSQYAI KFIEEKQKQLP NFKKLLL +LKK VASG
Sbjct: 61  NPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASG 120

Query: 121 KLVKVKSSFKLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAV-AKPAAKPKPAAKPK 180
           KL+KVK SFKL           S A KKP  AKPK K A K K+V AKPAAKPK  A  K
Sbjct: 121 KLIKVKGSFKL-----------SAAAKKPAVAKPKAKTAAKAKSVKAKPAAKPKAKAVVK 180

Query: 181 PKTAAKPKAAPKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSP 240
           PK A+K KA    KPK A AK K+ A      AAK KA  KPK+K  PAKVA+TS +++P
Sbjct: 181 PKVASKAKAV-AAKPKKAAAKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVAKTSVKTTP 240

Query: 241 GNKAPVPKPVVKKAPVAKKAPAKSVKSKKVKSPARKAPARRG 273
           G K    K V      AKK P KSVK+K VKSP +K   +RG
Sbjct: 241 GKKVAAVKKV-----AAKKVPVKSVKAKSVKSPVKKVSVKRG 262

[Close]

BLAST of CmoCh19G000620 vs. Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-41
Identity = 154/272 (56.62%), Postives = 178/272 (65.44%), Query Frame = 1


Query: 10  VESAAEPANAEPAGESPVKKAAKSKKSKESKE-KKP---AAPKRSRNPPTHPPYEEMIKD 69
           V+S A     +   + P  K  KSKK+  +K  KKP   AAP + +   +HP YEEMIKD
Sbjct: 12  VDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKD 71

Query: 70  AIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSFKLLPA 129
           AIVTLKERTGSSQYAI KFIEEK K LPP F+KLLL +LK+LVAS KLVKVK+SFK+  A
Sbjct: 72  AIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSA 131

Query: 130 KLAAS-KPASPAKKK-PVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAAPKP 189
           + AA+ KPA+P KKK  V AKPK K A    A AK  A  K   KP  K  AK K   KP
Sbjct: 132 RSAATPKPAAPVKKKATVVAKPKGKVAAAV-APAKAKAAAKGTKKPAAKVVAKAKVTAKP 191

Query: 190 KPKPAPAKAKSSAVAKPKAAAKTKA-APKPKAKENPAKVARTSTRSSPGNKAPVPKPVVK 249
           K K   AK KS +VA   A +KTKA A KPKAKE PAK +RTSTR+SPG K   P    K
Sbjct: 192 KAKVTAAKPKSKSVA---AVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAP---AK 251

Query: 250 KAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           K  V KKAPAKSV   KVKSPA++A  R+ +K
Sbjct: 252 KVAVTKKAPAKSV---KVKSPAKRASTRKAKK 273

[Close]

BLAST of CmoCh19G000620 vs. Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-32
Identity = 139/281 (49.47%), Postives = 163/281 (58.01%), Query Frame = 1


Query: 3   TEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYEEM 62
           TE P   V++A E     PA  +    AAK+KK+         APK+ R  PTH PY EM
Sbjct: 6   TETPAPLVDAAPEAPADAPAAPAADANAAKAKKA--------TAPKK-RASPTHLPYAEM 65

Query: 63  IKDAIVTLKERTGSSQYAITKFIEEKQK-QLPPNFKKLLLFHLKKLVASGKLVKVKSSFK 122
           + +AI +LKERTGSS YAI KF+E+K K +LPPNF+KLL   LKKLVA GKL KVK+S+K
Sbjct: 66  VSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYK 125

Query: 123 LLPA-------KLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTA 182
           L  A       K A  KP + AKK   AAKPK     KT A AKPA KPKPAA  KPK  
Sbjct: 126 LSSATKPNPKPKAAPKKPKTGAKKPKAAAKPK----AKTPAKAKPATKPKPAA--KPKAV 185

Query: 183 AKPKAAPKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKE-NPAKVARTSTRSSPGNK 242
            KPK   KPK KPA       A AKPK A    A PKP AK+   AK A+TS + +PG  
Sbjct: 186 VKPKTPAKPKAKPA-------AKAKPKTAG---AKPKPLAKKAGRAKAAKTSAKDTPG-- 245

Query: 243 APVPKPVVKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
                   KKAP  K AP     SKK  +P RKAP+R+ +K
Sbjct: 246 --------KKAPAKKAAP-----SKKAATPVRKAPSRKAKK 246

[Close]

BLAST of CmoCh19G000620 vs. Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.4e-32
Identity = 135/264 (51.14%), Postives = 155/264 (58.71%), Query Frame = 1


Query: 12  SAAEPANAEPAGESPVKKAAKSKKSKESKEKKP--AAPKRSRNPPTHPPYEEMIKDAIVT 71
           +A  P       + P  K  K+K  KE KEKK   AAPK+ R   +HP YEEMIKDAIVT
Sbjct: 17  AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKK-RTVSSHPTYEEMIKDAIVT 76

Query: 72  LKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSFKLLPAKLAA 131
           LKERTGSSQYAI KFIEEK+K+LPP F+KLLL +LK+LVASGKLVKVK+SFKL  A   A
Sbjct: 77  LKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSASAKA 136

Query: 132 SKPASPAKKK-PVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAAPKPKPKPA 191
           S P + A+K  P   KP   A  K K     A+K K     KPKTAA  K   K K KP 
Sbjct: 137 SSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKPV 196

Query: 192 PAKAKSSAVAKPKAAAKTKAA-PKPKAKENPAKVARTSTRSSPGNKAPVPKPVVKKAPVA 251
           P            AA K KA   KPKAK  PAK A+T+  +SP  KA      V      
Sbjct: 197 PRAT--------AAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATK 256

Query: 252 KKAPAKS-VKSKKVKSPARKAPAR 271
           KK P K  VK K VKSPA++A +R
Sbjct: 257 KKTPVKKVVKPKTVKSPAKRASSR 271

[Close]

BLAST of CmoCh19G000620 vs. TrEMBL
Match: A0A0A0KDR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G407650 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 5.7e-95
Identity = 225/274 (82.12%), Postives = 239/274 (87.23%), Query Frame = 1


Query: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPV+ VESAAEP NAE A E+P  K+ +SKKSKE K+KKPAAP++ RNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPANKSGRSKKSKEPKDKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLV SGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KL PAK A  KPASPAKKKPVAAKPK K   K KAVAK  AKPK AAKPKPK   KPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPV 240
             PKPK APAK+KSSAVAKPKAAAKTKAAPKPKAKE PAK ARTSTR+SPG KAP PKPV
Sbjct: 181 --PKPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPV 240

Query: 241 VKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           VKKAP AKKAP+KSVK+KKVKS A+K+PA+RG K
Sbjct: 241 VKKAPAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 272

[Close]

BLAST of CmoCh19G000620 vs. TrEMBL
Match: M5VP62_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009275mg PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.5e-66
Identity = 198/300 (66.00%), Postives = 217/300 (72.33%), Query Frame = 1


Query: 1   MATEEPVLAVESAAE-----PANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPT 60
           MA+EE + AV    E     P + EPA E P  K  K+ K+KE K KKPAAPK++R  PT
Sbjct: 1   MASEEAIAAVAETVENPPPEPTSTEPAEEKPAAKTGKASKAKEPKAKKPAAPKKARTTPT 60

Query: 61  HPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVK 120
           HPPYEEM+KDAIVTLKERTGSSQYAITKFIEEK KQLPPNFKKLLL+HLKKLV+S KLVK
Sbjct: 61  HPPYEEMVKDAIVTLKERTGSSQYAITKFIEEKHKQLPPNFKKLLLYHLKKLVSSDKLVK 120

Query: 121 VKSSFKLLPAKLAAS-KPASPAKKKPV-AAKPKPKAAVK------TKAVAKPAAKPKPAA 180
           VKSSFKL  A+ AA+ KPASP KKKPV AAKPK KAA K      TK  +K  AKPK AA
Sbjct: 121 VKSSFKLPSARSAAAPKPASPVKKKPVAAAKPKAKAAAKPKGGKTTKPASKAPAKPKAAA 180

Query: 181 ---KPKPKTAAKPK-AAPKPKPKPAPAKAKSSAVAKPK--------AAAKTK-AAPKPKA 240
              KPKPK AAKPK AAPKPK   AP K+K  A  KPK        AAAK K AAP+PK 
Sbjct: 181 AKPKPKPKPAAKPKAAAPKPK-AAAPVKSKPVATVKPKATAAKPKAAAAKPKAAAPRPKP 240

Query: 241 KENPAKVARTSTRSSPGNKAPVPKPVVKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           KE PAK ART TRSSPG KAP  KP  KKA   KKAP +SVK + VKSPA+KAPAR+GRK
Sbjct: 241 KERPAKAARTLTRSSPGRKAPAAKPAPKKAATPKKAPTRSVKPRSVKSPAKKAPARKGRK 299

[Close]

BLAST of CmoCh19G000620 vs. TrEMBL
Match: V4U4S0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021453mg PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.8e-64
Identity = 199/296 (67.23%), Postives = 214/296 (72.30%), Query Frame = 1


Query: 1   MATEEPVLAVESAAEPANAEPAGES-PVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPY 60
           MATE+PV+  E+  +P +AEP  E  P  KA K K SKE K KK AAP++ R+PP+HPPY
Sbjct: 1   MATEDPVVDTETLPQPESAEPVVEDKPSSKAGKGKTSKEPKAKKAAAPRKPRSPPSHPPY 60

Query: 61  EEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSS 120
           EEMIKDAIVTLKE+TGSSQYAI KFIEEK KQLPPNFKKLLLFHLKKLV SGKLVKVK S
Sbjct: 61  EEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLFHLKKLVGSGKLVKVKGS 120

Query: 121 FKLLPAKLAASKPA-----SPAKKK-PVAA-KPKPKAA---------VKTKAVAKPAAKP 180
           FKL  A+ A SKPA     SPAKKK PVAA K K KAA          K KA AK  AK 
Sbjct: 121 FKLPSARAAVSKPAASVPASPAKKKKPVAAGKAKTKAAPSKAKAPPKAKAKAPAKAPAKA 180

Query: 181 KPAAKPKPKTAAKPKAAPKPKPKPAPAKAKSSAVAKPKAAA-KTKAAPKPKAKENPAKVA 240
           KPAAKPK K AAK KA    K K APAKAK +A  KPKAA  KTK   KPK KE PAKVA
Sbjct: 181 KPAAKPKAKPAAKTKAVAA-KTKAAPAKAKPAA--KPKAATTKTKVTAKPKPKEKPAKVA 240

Query: 241 RTSTRSSPGNKAPVPKPVVKKAPVAKKAPAKSVKSKKVKSPARK----APARRGRK 275
           RTSTR+SPG +A  PKP  KKAP AKKAPAKSVK K VKSPA+     APARRGRK
Sbjct: 241 RTSTRTSPGKRAAAPKPAPKKAPAAKKAPAKSVKPKSVKSPAKSKKAAAPARRGRK 293

[Close]

BLAST of CmoCh19G000620 vs. TrEMBL
Match: F6GXM8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00730 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 4.0e-64
Identity = 186/282 (65.96%), Postives = 211/282 (74.82%), Query Frame = 1


Query: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MA+EEP +AVE  AEP  AEPA E+P  KAAK+KK+KE K KKPA  K+ R+PPTHPPY 
Sbjct: 1   MASEEPTVAVEPVAEPEAAEPAEENPAPKAAKTKKAKEPKAKKPAGAKKPRSPPTHPPYI 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMI +AIV LKE++GSSQYAI KFIEEK KQLPPNFKKLLL HLKK VA+GKLVKV+ S+
Sbjct: 61  EMITEAIVALKEKSGSSQYAIAKFIEEKHKQLPPNFKKLLLIHLKKFVAAGKLVKVRGSY 120

Query: 121 KLLPAKLAASKP--ASPAKKKPVAAKP----KPKAAVKTKAVAKPAAKPKPAAKPKPKTA 180
           KL P++ +A KP  A+PAKKK VA KP    KPK A  TKA   P AKPK A+ PKPK A
Sbjct: 121 KLPPSRPSAPKPTGAAPAKKKAVATKPKTAAKPKEAKNTKAKKAP-AKPK-ASVPKPKAA 180

Query: 181 AKPKAAPKPKPKPAPAKAKSSAVAKPKAAAKTKAA--PKPKAKENPAKVARTSTRSSPGN 240
           AK KAA KPK  P    AK    AKPKAAAKTK    PKPK KE PAK ARTSTR++PG 
Sbjct: 181 AKTKAAAKPKVAP----AKPKVPAKPKAAAKTKTVTKPKPKPKEKPAKAARTSTRTTPGK 240

Query: 241 KAPVPKPVVKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           KA  PKP +KK PV KKAPAKSVK K VKSPA+KA A++ +K
Sbjct: 241 KAAPPKPALKKTPV-KKAPAKSVKPKSVKSPAKKAAAKKAKK 275

[Close]

BLAST of CmoCh19G000620 vs. TrEMBL
Match: A0A067FM68_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022720mg PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 6.8e-64
Identity = 198/296 (66.89%), Postives = 213/296 (71.96%), Query Frame = 1


Query: 1   MATEEPVLAVESAAEPANAEPAGES-PVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPY 60
           MATE+PV+  E+  +P + EP  E  P  KA K K SKE K KK AAP++ R+PP+HPPY
Sbjct: 1   MATEDPVVDTETLPQPESPEPVVEDKPSSKAGKGKTSKEPKAKKAAAPRKPRSPPSHPPY 60

Query: 61  EEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSS 120
           EEMIKDAIVTLKE+TGSSQYAI KFIEEK KQLPPNFKKLLLFHLKKLV SGKLVKVK S
Sbjct: 61  EEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLFHLKKLVGSGKLVKVKGS 120

Query: 121 FKLLPAKLAASKPA-----SPAKKK-PVAA-KPKPKAA---------VKTKAVAKPAAKP 180
           FKL  A+ A SKPA     SPAKKK PVAA K K KAA          K KA AK  AK 
Sbjct: 121 FKLPSARAAVSKPAASVPASPAKKKKPVAAGKAKTKAAPSKAKAPPKAKAKAPAKAPAKA 180

Query: 181 KPAAKPKPKTAAKPKAAPKPKPKPAPAKAKSSAVAKPKAAA-KTKAAPKPKAKENPAKVA 240
           KPAAKPK K AAK KA    K K APAKAK +A  KPKAA  KTK   KPK KE PAKVA
Sbjct: 181 KPAAKPKAKPAAKTKAVAA-KTKAAPAKAKPAA--KPKAATTKTKVTAKPKPKEKPAKVA 240

Query: 241 RTSTRSSPGNKAPVPKPVVKKAPVAKKAPAKSVKSKKVKSPARK----APARRGRK 275
           RTSTR+SPG +A  PKP  KKAP AKKAPAKSVK K VKSPA+     APARRGRK
Sbjct: 241 RTSTRTSPGKRAAAPKPAPKKAPAAKKAPAKSVKPKSVKSPAKSKKAAAPARRGRK 293

[Close]

BLAST of CmoCh19G000620 vs. TAIR10
Match: AT2G30620.1 (AT2G30620.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-42
Identity = 154/272 (56.62%), Postives = 178/272 (65.44%), Query Frame = 1


Query: 10  VESAAEPANAEPAGESPVKKAAKSKKSKESKE-KKP---AAPKRSRNPPTHPPYEEMIKD 69
           V+S A     +   + P  K  KSKK+  +K  KKP   AAP + +   +HP YEEMIKD
Sbjct: 12  VDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKD 71

Query: 70  AIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSFKLLPA 129
           AIVTLKERTGSSQYAI KFIEEK K LPP F+KLLL +LK+LVAS KLVKVK+SFK+  A
Sbjct: 72  AIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSA 131

Query: 130 KLAAS-KPASPAKKK-PVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAAPKP 189
           + AA+ KPA+P KKK  V AKPK K A    A AK  A  K   KP  K  AK K   KP
Sbjct: 132 RSAATPKPAAPVKKKATVVAKPKGKVAAAV-APAKAKAAAKGTKKPAAKVVAKAKVTAKP 191

Query: 190 KPKPAPAKAKSSAVAKPKAAAKTKA-APKPKAKENPAKVARTSTRSSPGNKAPVPKPVVK 249
           K K   AK KS +VA   A +KTKA A KPKAKE PAK +RTSTR+SPG K   P    K
Sbjct: 192 KAKVTAAKPKSKSVA---AVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAP---AK 251

Query: 250 KAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           K  V KKAPAKSV   KVKSPA++A  R+ +K
Sbjct: 252 KVAVTKKAPAKSV---KVKSPAKRASTRKAKK 273

[Close]

BLAST of CmoCh19G000620 vs. TAIR10
Match: AT1G06760.1 (AT1G06760.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 139.8 bits (351), Expect = 2.5e-33
Identity = 135/264 (51.14%), Postives = 155/264 (58.71%), Query Frame = 1


Query: 12  SAAEPANAEPAGESPVKKAAKSKKSKESKEKKP--AAPKRSRNPPTHPPYEEMIKDAIVT 71
           +A  P       + P  K  K+K  KE KEKK   AAPK+ R   +HP YEEMIKDAIVT
Sbjct: 17  AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKK-RTVSSHPTYEEMIKDAIVT 76

Query: 72  LKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSFKLLPAKLAA 131
           LKERTGSSQYAI KFIEEK+K+LPP F+KLLL +LK+LVASGKLVKVK+SFKL  A   A
Sbjct: 77  LKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSASAKA 136

Query: 132 SKPASPAKKK-PVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAAPKPKPKPA 191
           S P + A+K  P   KP   A  K K     A+K K     KPKTAA  K   K K KP 
Sbjct: 137 SSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKPV 196

Query: 192 PAKAKSSAVAKPKAAAKTKAA-PKPKAKENPAKVARTSTRSSPGNKAPVPKPVVKKAPVA 251
           P            AA K KA   KPKAK  PAK A+T+  +SP  KA      V      
Sbjct: 197 PRAT--------AAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATK 256

Query: 252 KKAPAKS-VKSKKVKSPARKAPAR 271
           KK P K  VK K VKSPA++A +R
Sbjct: 257 KKTPVKKVVKPKTVKSPAKRASSR 271

[Close]

BLAST of CmoCh19G000620 vs. TAIR10
Match: AT2G18050.1 (AT2G18050.1 histone H1-3)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-07
Identity = 68/171 (39.77%), Postives = 90/171 (52.63%), Query Frame = 1


Query: 42  KKPAAPKRSRNPPT--HPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQ-LPPNFKK 101
           KK  A K+ R P T  HPPY +MIK+A++ LKE+ GSS YAI K IEEK K  LP +F+K
Sbjct: 8   KKTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRK 67

Query: 102 LLLFHLKKLVASGKLVKVKSSFKLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAK 161
            L   LK  VA GKLVK+++S+KL       ++      KK +  + K      TK    
Sbjct: 68  TLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKE----ITKRTRS 127

Query: 162 PAAKPKPAAKPKPKTAAKPKAAPKPKPKPA-PAKAKSSAVAKPKAAAKTKA 209
            + +PK       KT +  K   K K K A   K+  S+V K KA   + A
Sbjct: 128 SSTRPK-------KTVSVNKQEKKRKVKKARQPKSIKSSVGKKKAMKASAA 167

[Close]

BLAST of CmoCh19G000620 vs. TAIR10
Match: AT1G17520.1 (AT1G17520.1 Homeodomain-like/winged-helix DNA-binding family protein)

HSP 1 Score: 48.9 bits (115), Expect = 5.8e-06
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 52  NPPTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASG 111
           +P   P Y+ MI +A+  L +  GS   AI  FIE+ ++++PPNF+++L   L++L A G
Sbjct: 123 DPKNAPRYDGMIFEALSNLTDANGSDVSAIFNFIEQ-RQEVPPNFRRMLSSRLRRLAAQG 182

Query: 112 KLVKV 117
           KL KV
Sbjct: 183 KLEKV 186

[Close]

BLAST of CmoCh19G000620 vs. NCBI nr
Match: gi|659096963|ref|XP_008449373.1| (PREDICTED: histone H1 [Cucumis melo])

HSP 1 Score: 362.1 bits (928), Expect = 8.7e-97
Identity = 231/274 (84.31%), Postives = 242/274 (88.32%), Query Frame = 1


Query: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPV+ VESAAEP NAE A E+P  KAAKSKKSKE KEKKPAAP++ RNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLP NFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KL PAK A  KPASPAKKKPVAAKPK KA  K KAVAK  AKPK AAKPKPKT AKPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPV 240
             PKPK AP K+KSSAVAKPKAAAKTKAAPKPKAKE PAK ARTSTR+SPG KAP PKPV
Sbjct: 181 --PKPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPV 240

Query: 241 VKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           VKKAP AKKAP+KSVK+KKVKS A+KAP++RG K
Sbjct: 241 VKKAPAAKKAPSKSVKAKKVKSLAKKAPSKRGSK 272

[Close]

BLAST of CmoCh19G000620 vs. NCBI nr
Match: gi|449444633|ref|XP_004140078.1| (PREDICTED: histone H1 [Cucumis sativus])

HSP 1 Score: 355.5 bits (911), Expect = 8.2e-95
Identity = 225/274 (82.12%), Postives = 239/274 (87.23%), Query Frame = 1


Query: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPV+ VESAAEP NAE A E+P  K+ +SKKSKE K+KKPAAP++ RNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPANKSGRSKKSKEPKDKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLV SGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KL PAK A  KPASPAKKKPVAAKPK K   K KAVAK  AKPK AAKPKPK   KPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPV 240
             PKPK APAK+KSSAVAKPKAAAKTKAAPKPKAKE PAK ARTSTR+SPG KAP PKPV
Sbjct: 181 --PKPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPV 240

Query: 241 VKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           VKKAP AKKAP+KSVK+KKVKS A+K+PA+RG K
Sbjct: 241 VKKAPAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 272

[Close]

BLAST of CmoCh19G000620 vs. NCBI nr
Match: gi|659092713|ref|XP_008447183.1| (PREDICTED: histone H1-like [Cucumis melo])

HSP 1 Score: 335.9 bits (860), Expect = 6.7e-89
Identity = 221/274 (80.66%), Postives = 237/274 (86.50%), Query Frame = 1


Query: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPV+ VE AAE  NAE A E+P  +AAKSKKS+E KEKKPAA ++ R+PPTHPPYE
Sbjct: 1   MATEEPVVPVEYAAELTNAEQAEENPANEAAKSKKSREPKEKKPAAHRKPRSPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIE KQKQLP NFKKLLLFHLKKL+ASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIETKQKQLPSNFKKLLLFHLKKLLASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KL P   A +KPASP  KKPVAAKP+ K   K KAVAK  AKPK AAKPKPKTAAKPKAA
Sbjct: 121 KLKP---AVAKPASPV-KKPVAAKPRSKTVAKPKAVAKSPAKPKAAAKPKPKTAAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPV 240
             PKPKPAPAK+KSSAVAKPKAA KTKAAPKPKAKE PAKVARTSTR+SPG KAP PKPV
Sbjct: 181 --PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPV 240

Query: 241 VKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           VKKAP AKKA A+SVKSKKV+SPA+ APA+RGRK
Sbjct: 241 VKKAPAAKKALARSVKSKKVESPAKTAPAKRGRK 268

[Close]

BLAST of CmoCh19G000620 vs. NCBI nr
Match: gi|1009147583|ref|XP_015891488.1| (PREDICTED: histone H1 [Ziziphus jujuba])

HSP 1 Score: 263.8 bits (673), Expect = 3.2e-67
Identity = 192/289 (66.44%), Postives = 219/289 (75.78%), Query Frame = 1


Query: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MA+EEP +A E+A EPA+ +P  ++P  K  K+KK KE+K KK  AP++ RNPP+HPPY 
Sbjct: 1   MASEEPTVAAETAPEPASTKPTEDNPPVKGGKTKKVKEAKPKKAPAPRKPRNPPSHPPYV 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMI+DAIVTLKE+TGSSQYAI KFIEEK KQLPPNFKKLLL+ LKKLVA+GKLVKVK SF
Sbjct: 61  EMIQDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYQLKKLVAAGKLVKVKGSF 120

Query: 121 KLLPAKLAASK---PASPAKKKP---VAAKPKPKAAVK------TKAVAKPAAKPKPAAK 180
           KL P + +A+K   PASPAKKK    VAAKPK KA+ K      TK+  K  AK K AAK
Sbjct: 121 KLPPVRSSATKSSAPASPAKKKSAVSVAAKPKAKASAKPKTGKTTKSTTKSPAKAKAAAK 180

Query: 181 PKPKTAA-KPKAAPKPKPKPA-PAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTST 240
            KPK AA KPKAA   KPK A PAK KS++ AKPKAAAKTK A KPK KE P K ARTST
Sbjct: 181 SKPKAAAAKPKAATAAKPKAAAPAKTKSASAAKPKAAAKTKTAAKPKPKEKPVKAARTST 240

Query: 241 RSSPGNKAPVPKPVVKKAP-VAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           R+SPG KA  PK   KKAP  AKKAPAKSVK K VKSPA+KAPA++GRK
Sbjct: 241 RTSPGKKAAPPKSTPKKAPAAAKKAPAKSVKPKSVKSPAKKAPAKKGRK 289

[Close]

BLAST of CmoCh19G000620 vs. NCBI nr
Match: gi|645259335|ref|XP_008235313.1| (PREDICTED: histone H1.2 [Prunus mume])

HSP 1 Score: 262.7 bits (670), Expect = 7.2e-67
Identity = 199/300 (66.33%), Postives = 219/300 (73.00%), Query Frame = 1


Query: 1   MATEEPVLAVESAAE-----PANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPT 60
           MA+EE + AV    E     PA+ EPA E P  K +K+ K+KE K KKPAAPK++R  PT
Sbjct: 1   MASEEAIAAVAETVENPPPEPASTEPAEEKPAAKTSKASKAKEPKAKKPAAPKKARTTPT 60

Query: 61  HPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVK 120
           HPPYEEM+KDAIVTLKERTGSSQYAITKFIEEK KQLPPNFKKLLL+HLKKLV+S KLVK
Sbjct: 61  HPPYEEMVKDAIVTLKERTGSSQYAITKFIEEKHKQLPPNFKKLLLYHLKKLVSSDKLVK 120

Query: 121 VKSSFKLLPAK-LAASKPASPAKKKPV-AAKPKPKAAVK------TKAVAKPAAKPKPAA 180
           VKSSFKL  A+  AA+KPASP KKKPV AAKPK KAA K      TK  +K  AKPK AA
Sbjct: 121 VKSSFKLPSARSAAATKPASPVKKKPVAAAKPKAKAAAKPKGGKTTKPASKAPAKPKAAA 180

Query: 181 ---KPKPKTAAKPK-AAPKPKPKPAPAKAKSSAVAKPK--------AAAKTK-AAPKPKA 240
              KPKPK AAKPK AAPKPK   AP K+K  A  KPK        AAAK K AAP+PK 
Sbjct: 181 AKPKPKPKPAAKPKAAAPKPK-AAAPVKSKPVATVKPKVTAAKPKAAAAKPKAAAPRPKP 240

Query: 241 KENPAKVARTSTRSSPGNKAPVPKPVVKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 275
           KE PAK ART TRSSPG KAP  KP  KKA   KKAP +SVK + VKSPA+KAPAR+GRK
Sbjct: 241 KERPAKAARTLTRSSPGRKAPAAKPAPKKAATPKKAPTRSVKPRSVKSPAKKAPARKGRK 299

The following BLAST results are available for this feature:

BLAST of CmoCh19G000620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H1_SOLLC	3.0e-49	59.18	Histone H1 OS=Solanum lycopersicum PE=3 SV=1	[more]
H1_PEA	2.8e-47	56.03	Histone H1 OS=Pisum sativum PE=2 SV=1	[more]
H12_ARATH	1.8e-41	56.62	Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1	[more]
H1_MAIZE	2.6e-32	49.47	Histone H1 OS=Zea mays PE=2 SV=2	[more]
H11_ARATH	4.4e-32	51.14	Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=1 SV=1	[more]

BLAST of CmoCh19G000620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDR2_CUCSA	5.7e-95	82.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G407650 PE=3 SV=1	[more]
M5VP62_PRUPE	2.5e-66	66.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009275mg PE=3 SV=1	[more]
V4U4S0_9ROSI	1.8e-64	67.23	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021453mg PE=3 SV=1	[more]
F6GXM8_VITVI	4.0e-64	65.96	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00730 PE=3 SV=...	[more]
A0A067FM68_CITSI	6.8e-64	66.89	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022720mg PE=3 SV=1	[more]

BLAST of CmoCh19G000620 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30620.1	1.0e-42	56.62	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	2.5e-33	51.14	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	1.8e-07	39.77	histone H1-3	[more]
AT1G17520.1	5.8e-06	41.54	Homeodomain-like/winged-helix DNA-binding family protein	[more]

BLAST of CmoCh19G000620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096963\|ref\|XP_008449373.1\|	8.7e-97	84.31	PREDICTED: histone H1 [Cucumis melo]	[more]
gi\|449444633\|ref\|XP_004140078.1\|	8.2e-95	82.12	PREDICTED: histone H1 [Cucumis sativus]	[more]
gi\|659092713\|ref\|XP_008447183.1\|	6.7e-89	80.66	PREDICTED: histone H1-like [Cucumis melo]	[more]
gi\|1009147583\|ref\|XP_015891488.1\|	3.2e-67	66.44	PREDICTED: histone H1 [Ziziphus jujuba]	[more]
gi\|645259335\|ref\|XP_008235313.1\|	7.2e-67	66.33	PREDICTED: histone H1.2 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005818	Histone_H1/H5_H15
IPR005819	Histone_H5
IPR011991	Winged helix-turn-helix DNA-binding domain

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G000620.1	CmoCh19G000620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 56..122 score: 2.4
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 53..119 score: 1.6
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 55..124 score: 30
IPR005819	Histone H5	PRINTS	PR00624	HISTONEH5	coord: 198..217 score: 2.9E-16coord: 42..63 score: 2.9E-16coord: 176..193 score: 2.9E-16coord: 69..86 score: 2.9E-16coord: 142..156 score: 2.9
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 52..125 score: 2.7
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 52..134 score: 4.24
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 1..274 score: 1.2
None	No IPR available	PANTHER	PTHR11467:SF54	SUBFAMILY NOT NAMED	coord: 1..274 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G000620	CmaCh02G017690	Cucurbita maxima (Rimu)	cmacmoB598
CmoCh19G000620	CmaCh19G000630	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G000620	Cla006014	Watermelon (97103) v1	cmowmB485
CmoCh19G000620	ClCG07G000670	Watermelon (Charleston Gray)	cmowcgB466
CmoCh19G000620	Lsi05G009770	Bottle gourd (USVL1VR-Ls)	cmolsiB470
CmoCh19G000620	Cp4.1LG05g01340	Cucurbita pepo (Zucchini)	cmocpeB498
CmoCh19G000620	Cp4.1LG15g00450	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G000620	CsaV3_6G036780	Cucumber (Chinese Long) v3	cmocucB0620
CmoCh19G000620	Cla97C07G128970	Watermelon (97103) v2	cmowmbB521
CmoCh19G000620	Bhi05G000192	Wax gourd	cmowgoB0654
CmoCh19G000620	CsGy6G020990	Cucumber (Gy14) v2	cgybcmoB765
CmoCh19G000620	Carg16861	Silver-seed gourd	carcmoB1021
CmoCh19G000620	Carg08984	Silver-seed gourd	carcmoB1055

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G000620	CmoCh02G018130	Cucurbita moschata (Rifu)	cmocmoB387

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G000620	Cucumber (Chinese Long) v3	cmocucB0606
CmoCh19G000620	Melon (DHL92) v3.6.1	cmomedB546