Carg16861 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16861
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	histone H1-like
Location	Cucurbita_argyrosperma_scaffold_105 : 363016 .. 364837 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAACATGACAAGCCGACTATTTAAGCCTAAACATTTTAGCCAAACCCACTCAACGAAATTACCAGTAACATTTCATATAGCTCTCTCGTTTCTCTAGATCCCAATTTTTGTTCCGATCATCTTTCCATTTCTGAATTCTACTTCTGGTTTGTGGAATTTGATCTTGTTTCTACATCAATGGCTACTGAGGAGCCAGTTTTGGCGGTGGAGTCTGCGGCAGAGCCGGCCAACGCCGAACCAGCCGGAGAAAGTCCTGTGAAAAAGGCCGCGAAGTCGAAGAAATCCAAAGAATCGAAAGAGAAGAAGCCTGCTGCGCCTAAAAGATCTAGAAATCCCCCAACTCATCCTCCATATGAAGAGGTGTGTTGCTGAATTGAGTTTGGAGTTTAGAACATAGTTTTCTTTCGGATTCATGTTTGGTGTAATGGATCTGTTTTGTTGATTTGGTTTGATGTTTTGATTTCAGATGATTAAGGATGCGATTGTCACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATTACGAAATTCATTGAGGAGAAGCAGAAGCAACTTCCTCCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTTGCTTCCGGGAAGCTGGTGAAGGTTAAGAGCTCGTTCAAGCTTCTCCCAGCGAAATTGGCAGCTTCGAAGCCTGCTTCTCCTGCGAAGAAGAAGCCTGTTGCTGCCAAGCCGAAACCTAAAGCGGCGGTGAAGACCAAGGCTGTGGCTAAGCCGGCAGCAAAGCCGAAACCGGCAGCGAAGCCGAAGCCCAAGACGGCTGCTAAACCCAAGGCTGCTCCTAAACCTAAACCGAAACCTGCTCCCGCCAAGGCAAAGAGCAGTGCGGTTGCGAAGCCGAAAGCTGCAGCGAAGACTAAAGCTGCTCCCAAGCCGAAAGCCAAGGAGAATCCCGCCAAGGTTGCTAGGACATCCACGAGATCCTCACCAGGGAATAAGGCACCTGTTCCCAAACCGGTGGTGAAGAAAGCACCGGTGGCCAAGAAGGCTCCGGCGAAAAGTGTTAAGTCTAAGAAAGTGAAATCGCCGGCGAGAAAGGCTCCGGCAAGAAGAGGAAGGAAGTAAATGAGATAGAAGGAAAACTAGCGGCGGTCCTGTAAATCCGTTATCCTTGTGTGGGTGTACAGAGCCTTACATCCCATGCTATAGAGGAGTTTACTTCAGACTTTTCGAGTTTCTTTTACTTGTTTACTTGTAGACCTTTTTCCCAAGTTGATGTATCACTCAGCTTAGTTTTTAATGGAAATTCTGTGATCAATTAGGAGCGTCAATTTCAGTTTTCAACCCATGATTTCTACGGCCAGTCCGACTGCATCAATTATCTGGAAACGTTCCGTATCTCTTACGCTAGAAATGGATATGGATTGCTTAATCGAAGTTTGAAGCTTGGTTGCTAAGCTTGGTAAATCTCGATCTTTCTTGTACTTCTCGCCCTCATATCTGTCTACGATGATTTCAAAGCGTATTTAATTCATTAGCTAGCTGTATTTGGTCATTGCTTAGATAGGTTGATTGGTTGATAGAGTTTGATCATACCCGTTCATCCCTTTTGCGATATGATTTATCATCTTTCTCATTATGTTTGGTATAATCTACTGATGTTTGCATTATTTCTCCCTTACAGATTGTTAGGTTTTTCGTGCTTGGATAGGTCACTGAGTGAGAAGCTATCATTATCGTATAAAATCATGAAGGTTATAAGACTGCTTAATAAATCTATTTGGGTATTTGTTGAGGATGGTTGGGAGGGAGTCACACGAATTTAGAAGTAAGGAA

mRNA sequence

GATGAACATGACAAGCCGACTATTTAAGCCTAAACATTTTAGCCAAACCCACTCAACGAAATTACCAGTAACATTTCATATAGCTCTCTCGTTTCTCTAGATCCCAATTTTTGTTCCGATCATCTTTCCATTTCTGAATTCTACTTCTGGTTTGTGGAATTTGATCTTGTTTCTACATCAATGGCTACTGAGGAGCCAGTTTTGGCGGTGGAGTCTGCGGCAGAGCCGGCCAACGCCGAACCAGCCGGAGAAAGTCCTGTGAAAAAGGCCGCGAAGTCGAAGAAATCCAAAGAATCGAAAGAGAAGAAGCCTGCTGCGCCTAAAAGATCTAGAAATCCCCCAACTCATCCTCCATATGAAGAGATGATTAAGGATGCGATTGTCACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATTACGAAATTCATTGAGGAGAAGCAGAAGCAACTTCCTCCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTTGCTTCCGGGAAGCTGGTGAAGGTTAAGAGCTCGTTCAAGCTTCTCCCAGCGAAATTGGCAGCTTCGAAGCCTGCTTCTCCTGCGAAGAAGAAGCCTGTTGCTGCCAAGCCGAAACCTAAAGCGGCGGTGAAGACCAAGGCTGTGGCTAAGCCGGCAGCAAAGCCGAAACCGGCAGCGAAGCCGAAGCCCAAGACGGCTGCTAAACCCAAGGCTGCTCCTAAACCTAAACCGAAACCTGCTCCCGCCAAGGCAAAGAGCAGTGCGGTTGCGAAGCCGAAAGCTGCAGCGAAGACTAAAGCTGCTCCCAAGCCGAAAGCCAAGGAGAATCCCGCCAAGGTTGCTAGGACATCCACGAGATCCTCACCAGGGAATAAGGCACCTGTTCCCAAACCGGTGGTGAAGAAAGCACCGGTGGCCAAGAAGGCTCCGGCGAAAAGTGTTAAGTCTAAGAAAGTGAAATCGCCGGCGAGAAAGGCTCCGGCAAGAAGAGGAAGGAAGTAAATGAGATAGAAGGAAAACTAGCGGCGGTCCTGTAAATCCGTTATCCTTGTGTGGGTGTACAGAGCCTTACATCCCATGCTATAGAGGAGTTTACTTCAGACTTTTCGAGTTTCTTTTACTTGTTTACTTGTAGACCTTTTTCCCAAGTTGATGTATCACTCAGCTTAGTTTTTAATGGAAATTCTGTGATCAATTAGGAGCGTCAATTTCAGTTTTCAACCCATGATTTCTACGGCCAGTCCGACTGCATCAATTATCTGGAAACGTTCCGTATCTCTTACGCTAGAAATGGATATGGATTGCTTAATCGAAGTTTGAAGCTTGGTTGCTAAGCTTGGTAAATCTCGATCTTTCTTGTACTTCTCGCCCTCATATCTGTCTACGATGATTTCAAAGCGTATTTAATTCATTAGCTAGCTGTATTTGGTCATTGCTTAGATAGGTTGATTGGTTGATAGAGTTTGATCATACCCGTTCATCCCTTTTGCGATATGATTTATCATCTTTCTCATTATGTTTGGTATAATCTACTGATGTTTGCATTATTTCTCCCTTACAGATTGTTAGGTTTTTCGTGCTTGGATAGGTCACTGAGTGAGAAGCTATCATTATCGTATAAAATCATGAAGGTTATAAGACTGCTTAATAAATCTATTTGGGTATTTGTTGAGGATGGTTGGGAGGGAGTCACACGAATTTAGAAGTAAGGAA

Coding sequence (CDS)

ATGGCTACTGAGGAGCCAGTTTTGGCGGTGGAGTCTGCGGCAGAGCCGGCCAACGCCGAACCAGCCGGAGAAAGTCCTGTGAAAAAGGCCGCGAAGTCGAAGAAATCCAAAGAATCGAAAGAGAAGAAGCCTGCTGCGCCTAAAAGATCTAGAAATCCCCCAACTCATCCTCCATATGAAGAGATGATTAAGGATGCGATTGTCACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATTACGAAATTCATTGAGGAGAAGCAGAAGCAACTTCCTCCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTTGCTTCCGGGAAGCTGGTGAAGGTTAAGAGCTCGTTCAAGCTTCTCCCAGCGAAATTGGCAGCTTCGAAGCCTGCTTCTCCTGCGAAGAAGAAGCCTGTTGCTGCCAAGCCGAAACCTAAAGCGGCGGTGAAGACCAAGGCTGTGGCTAAGCCGGCAGCAAAGCCGAAACCGGCAGCGAAGCCGAAGCCCAAGACGGCTGCTAAACCCAAGGCTGCTCCTAAACCTAAACCGAAACCTGCTCCCGCCAAGGCAAAGAGCAGTGCGGTTGCGAAGCCGAAAGCTGCAGCGAAGACTAAAGCTGCTCCCAAGCCGAAAGCCAAGGAGAATCCCGCCAAGGTTGCTAGGACATCCACGAGATCCTCACCAGGGAATAAGGCACCTGTTCCCAAACCGGTGGTGAAGAAAGCACCGGTGGCCAAGAAGGCTCCGGCGAAAAGTGTTAAGTCTAAGAAAGTGAAATCGCCGGCGAGAAAGGCTCCGGCAAGAAGAGGAAGGAAGTAA

Protein sequence

MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSFKLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAAPKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPVVKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK

Homology

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BLAST of Carg16861 vs. NCBI nr
Match: XP_022963684.1 (histone H1-like [Cucurbita moschata])

HSP 1 Score: 184.9 bits (468), Expect = 3.7e-43
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60
           MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE
Sbjct: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPA 137
           KLLPAKLAASKPASPA
Sbjct: 121 KLLPAKLAASKPASPA 136

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BLAST of Carg16861 vs. NCBI nr
Match: XP_023554323.1 (histone H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 3.7e-43
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60
           MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE
Sbjct: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPA 137
           KLLPAKLAASKPASPA
Sbjct: 121 KLLPAKLAASKPASPA 136

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BLAST of Carg16861 vs. NCBI nr
Match: XP_022967411.1 (histone H1-like [Cucurbita maxima])

HSP 1 Score: 183.7 bits (465), Expect = 8.3e-43
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60
           MATEEPV+AVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE
Sbjct: 1   MATEEPVVAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPA 137
           KLLPAKLAASKPASPA
Sbjct: 121 KLLPAKLAASKPASPA 136

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BLAST of Carg16861 vs. NCBI nr
Match: XP_022930932.1 (histone H1 [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-31
Identity = 113/120 (94.17%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60
           MATEEPV+ VESAAEP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLP NFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

[Close]

BLAST of Carg16861 vs. NCBI nr
Match: XP_020233356.1 (histone H1-like [Cajanus cajan])

HSP 1 Score: 137.5 bits (345), Expect = 6.8e-29
Identity = 113/133 (84.96%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60
           MATEEP +AVE A EP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHP YE
Sbjct: 1   MATEEPTVAVEPAPEP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPSYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAI +LKE+TGSSQYAI KFIEEK KQLPPNFKKLLLFHLKK VA+GKLVKVK SF
Sbjct: 61  EMIKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLFHLKKQVAAGKLVKVKGSF 120

Query: 121 KLLPAKLAASKPA 134
           KL PAK +AS PA
Sbjct: 121 KLPPAKPSASSPA 132

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BLAST of Carg16861 vs. TAIR10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 109.8 bits (273), Expect = 2.8e-24
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 57  PPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKV 116
           P YEEMIKDAIVTLKERTGSSQYAI KFIEEK K LPP F+KLLL +LK+LVAS KLVKV
Sbjct: 63  PTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKV 122

Query: 117 KSSFKLLPAKLAAS-KPASP 136
           K+SFK+  A+ AA+ KPA+P
Sbjct: 123 KASFKIPSARSAATPKPAAP 142

[Close]

BLAST of Carg16861 vs. TAIR10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-22
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 55  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLV 114
           +HP YEEMIKDAIVTLKERTGSSQYAI KFIEEK+K+LPP F+KLLL +LK+LVASGKLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLV 120

Query: 115 K 116
           K
Sbjct: 121 K 121

[Close]

BLAST of Carg16861 vs. TAIR10
Match: AT2G18050.1 (histone H1-3)

HSP 1 Score: 78.2 bits (191), Expect = 8.9e-15
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 55  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQ-LPPNFKKLLLFHLKKLVASGKL 114
           THPPY +MIK+A++ LKE+ GSS YAI K IEEK K  LP +F+K L   LK  VA GKL
Sbjct: 23  THPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKL 82

Query: 115 VKVKSSFKL 123
           VK+++S+KL
Sbjct: 83  VKIRASYKL 91

[Close]

BLAST of Carg16861 vs. TAIR10
Match: AT1G48620.1 (high mobility group A5)

HSP 1 Score: 55.8 bits (133), Expect = 4.7e-08
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 55  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLV 114
           +HPPY +MI  AI  L E  GSS+ AI+++IE     +P     LL  HLK L  SG LV
Sbjct: 74  SHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILV 133

Query: 115 KVKSSFK 122
            VK S+K
Sbjct: 134 MVKKSYK 140

[Close]

BLAST of Carg16861 vs. TAIR10
Match: AT1G14900.1 (high mobility group A)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07
Identity = 25/64 (39.06%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 57  PPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKV 116
           PPY +MI +AI +L ++ G ++  I K IE  Q+ LPP+   LL +HL ++  +G+L+ V
Sbjct: 24  PPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMV 83

Query: 117 KSSF 121
           K+++
Sbjct: 84  KNNY 87

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BLAST of Carg16861 vs. Swiss-Prot
Match: sp|P08283|H1_PEA (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.5e-24
Identity = 105/139 (75.54%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEP------ANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPP 60
           MATEEP++AVE+  EP         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P 
Sbjct: 1   MATEEPIVAVETVPEPIVTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPA 60

Query: 61  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLV 120
           +HP YEEMIKDAIV+LKE+ GSSQYAI KFIEEKQKQLP NFKKLLL +LKK VASGKL+
Sbjct: 61  SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLI 120

Query: 121 KVKSSFKLLPAKLAASKPA 134
           KVK SFKL     AA KPA
Sbjct: 121 KVKGSFKL---SAAAKKPA 136

[Close]

BLAST of Carg16861 vs. Swiss-Prot
Match: sp|P26569|H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-23
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 57  PPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKV 116
           P YEEMIKDAIVTLKERTGSSQYAI KFIEEK K LPP F+KLLL +LK+LVAS KLVKV
Sbjct: 63  PTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKV 122

Query: 117 KSSFKLLPAKLAAS-KPASP 136
           K+SFK+  A+ AA+ KPA+P
Sbjct: 123 KASFKIPSARSAATPKPAAP 142

[Close]

BLAST of Carg16861 vs. Swiss-Prot
Match: sp|P26568|H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-20
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 55  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLV 114
           +HP YEEMIKDAIVTLKERTGSSQYAI KFIEEK+K+LPP F+KLLL +LK+LVASGKLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLV 120

Query: 115 K 116
           K
Sbjct: 121 K 121

[Close]

BLAST of Carg16861 vs. Swiss-Prot
Match: sp|P37218|H1_SOLLC (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-19
Identity = 66/110 (60.00%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60
           MATEEPV+  E   E A                    XXXXXX          PTHPPY 
Sbjct: 1   MATEEPVIVNEVVEEQAAPETVKDEANPPAKSGKAKKXXXXXXPAAPRKRSATPTHPPYF 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVAS 111
           EMIKDAIVTLKERTGSSQ+AITKFIEEKQK LP NFKKLLL  LKK VAS
Sbjct: 61  EMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVAS 110

[Close]

BLAST of Carg16861 vs. Swiss-Prot
Match: sp|Q9M5W4|H1_EUPES (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-17
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 55  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASG 112
           +HP + EMI DAI TLKERTGSSQYAI KF+E+K KQLP NF+KLLLFHLKKLVASG
Sbjct: 50  SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASG 106

[Close]

BLAST of Carg16861 vs. TrEMBL
Match: tr|Q76HY4|Q76HY4_MALDO (Histone 1 (Fragment) OS=Malus domestica OX=3750 GN=Md-H1 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 54  PTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKL 113
           P HPPYEEM+KDAIVTLKERTGSSQYAITKFIE+KQKQLPPNFKKLLLFHLKKLV+S K+
Sbjct: 56  PAHPPYEEMVKDAIVTLKERTGSSQYAITKFIEDKQKQLPPNFKKLLLFHLKKLVSSNKI 115

Query: 114 VKVKSSFKLLPAKLAASKPASP 136
           VKVK+SFKL P + +  KPASP
Sbjct: 116 VKVKNSFKLPPVRSSVPKPASP 137

[Close]

BLAST of Carg16861 vs. TrEMBL
Match: tr|A0A151S378|A0A151S378_CAJCA (Histone H1.2 OS=Cajanus cajan OX=3821 GN=KK1_029070 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.8e-28
Identity = 111/131 (84.73%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60
           MATEEP +AVE A EP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHP YE
Sbjct: 1   MATEEPTVAVEPAPEP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPSYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAI +LKE+TGSSQYAI KFIEEK KQLPPNFKKLLLFHLKK VA+GKLVKVK SF
Sbjct: 61  EMIKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLFHLKKQVAAGKLVKVKGSF 120

Query: 121 KLLPAKLAASK 132
           KL PAK +A+K
Sbjct: 121 KLPPAKPSAAK 130

[Close]

BLAST of Carg16861 vs. TrEMBL
Match: tr|A0A1S3BGU4|A0A1S3BGU4_CUCME (histone H1-like OS=Cucumis melo OX=3656 GN=LOC103489696 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 114/135 (84.44%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60
           MATEEPV+ VE AAE  NAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       YE
Sbjct: 1   MATEEPVVPVEYAAELTNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIE KQKQLP NFKKLLLFHLKKL+ASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIETKQKQLPSNFKKLLLFHLKKLLASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASP 136
           KL P   A +KPASP
Sbjct: 121 KLKP---AVAKPASP 132

[Close]

BLAST of Carg16861 vs. TrEMBL
Match: tr|A0A067JC23|A0A067JC23_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21823 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 7.2e-27
Identity = 105/129 (81.40%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60
           MA+E+P + VE+  EPA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   THPPYE
Sbjct: 1   MASEDPTVDVEANPEPAITEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKE+TGSSQYAITKFIEEK KQLPPNFKKLLLFHLKKLVA+GK+VKVK SF
Sbjct: 61  EMIKDAIVTLKEKTGSSQYAITKFIEEKHKQLPPNFKKLLLFHLKKLVAAGKIVKVKGSF 120

Query: 121 KLLPAKLAA 130
           KL P K +A
Sbjct: 121 KLPPVKSSA 129

[Close]

BLAST of Carg16861 vs. TrEMBL
Match: tr|A0A1U8LA45|A0A1U8LA45_GOSHI (histone H1-like OS=Gossypium hirsutum OX=3635 GN=LOC107924194 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.4e-27
Identity = 110/132 (83.33%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 1   MATEEPVLAVESAAEPANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPPTHPPYE 60
           MATEEP +AVESA      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  P HPPYE
Sbjct: 1   MATEEPTVAVESAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EM+KDAIVTLKE+TGSSQYAITKFIEEKQK LP NFKKLLLFHLKKLVA+GKLVKVK+S+
Sbjct: 61  EMVKDAIVTLKEKTGSSQYAITKFIEEKQKNLPGNFKKLLLFHLKKLVAAGKLVKVKNSY 120

Query: 121 KLLPAKLAASKP 133
           KL  AK  ASKP
Sbjct: 121 KLPSAK--ASKP 130

The following BLAST results are available for this feature:

BLAST of Carg16861 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963684.1	3.7e-43	100.00	histone H1-like [Cucurbita moschata]	[more]
XP_023554323.1	3.7e-43	100.00	histone H1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967411.1	8.3e-43	99.26	histone H1-like [Cucurbita maxima]	[more]
XP_022930932.1	3.3e-31	94.17	histone H1 [Cucurbita moschata]	[more]
XP_020233356.1	6.8e-29	84.96	histone H1-like [Cajanus cajan]	[more]

BLAST of Carg16861 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30620.1	2.8e-24	76.25	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	7.5e-22	83.61	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	8.9e-15	59.42	histone H1-3	[more]
AT1G48620.1	4.7e-08	47.76	high mobility group A5	[more]
AT1G14900.1	1.4e-07	39.06	high mobility group A	[more]

BLAST of Carg16861 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P08283\|H1_PEA	4.5e-24	75.54	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
sp\|P26569\|H12_ARATH	5.0e-23	76.25	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
sp\|P26568\|H11_ARATH	1.4e-20	83.61	Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1	[more]
sp\|P37218\|H1_SOLLC	2.6e-19	60.00	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
sp\|Q9M5W4\|H1_EUPES	1.4e-17	78.95	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]

BLAST of Carg16861 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q76HY4\|Q76HY4_MALDO	1.0e-28	82.93	Histone 1 (Fragment) OS=Malus domestica OX=3750 GN=Md-H1 PE=2 SV=1	[more]
tr\|A0A151S378\|A0A151S378_CAJCA	3.8e-28	84.73	Histone H1.2 OS=Cajanus cajan OX=3821 GN=KK1_029070 PE=3 SV=1	[more]
tr\|A0A1S3BGU4\|A0A1S3BGU4_CUCME	5.5e-27	84.44	histone H1-like OS=Cucumis melo OX=3656 GN=LOC103489696 PE=3 SV=1	[more]
tr\|A0A067JC23\|A0A067JC23_JATCU	7.2e-27	81.40	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21823 PE=3 SV=1	[more]
tr\|A0A1U8LA45\|A0A1U8LA45_GOSHI	9.4e-27	83.33	histone H1-like OS=Gossypium hirsutum OX=3635 GN=LOC107924194 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR036388	WH-like_DNA-bd_sf
IPR005818	Histone_H1/H5_H15
IPR005819	Histone_H5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16861-RA	Carg16861-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Histone H5	PRINTS	PR00624	HISTONEH5	coord: 198..217 score: 33.33 coord: 42..63 score: 42.42 coord: 176..193 score: 45.68 coord: 69..86 score: 43.21 coord: 142..156 score: 27.41
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 53..119 e-value: 1.6E-34 score: 130.7
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 56..122 e-value: 4.0E-19 score: 68.7
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 55..124 score: 30.348
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 53..133 e-value: 7.28163E-18 score: 74.9651
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 50..140 e-value: 2.9E-21 score: 77.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..274
None	No IPR available	PANTHER	PTHR11467:SF87	HISTONE H1.1-RELATED	coord: 3..274
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 3..274
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 52..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16861	Cla006014	Watermelon (97103) v1	carwmB0750
Carg16861	Csa6G407650	Cucumber (Chinese Long) v2	carcuB0771
Carg16861	ClCG07G000670	Watermelon (Charleston Gray)	carwcgB0730
Carg16861	CSPI06G21710	Wild cucumber (PI 183967)	carcpiB0789
Carg16861	CmaCh02G017690	Cucurbita maxima (Rimu)	carcmaB1051
Carg16861	CmaCh19G000630	Cucurbita maxima (Rimu)	carcmaB1049
Carg16861	CmoCh02G018130	Cucurbita moschata (Rifu)	carcmoB1023
Carg16861	CmoCh19G000620	Cucurbita moschata (Rifu)	carcmoB1021
Carg16861	Lsi05G009770	Bottle gourd (USVL1VR-Ls)	carlsiB689
Carg16861	Cp4.1LG05g01340	Cucurbita pepo (Zucchini)	carcpeB1062
Carg16861	Cp4.1LG15g00450	Cucurbita pepo (Zucchini)	carcpeB1057
Carg16861	CsGy6G020990	Cucumber (Gy14) v2	carcgybB0749
Carg16861	CsaV3_6G036780	Cucumber (Chinese Long) v3	carcucB0792
Carg16861	Cla97C07G128970	Watermelon (97103) v2	carwmbB0788
Carg16861	Bhi05G000192	Wax gourd	carwgoB0888

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16861	Carg08984	Silver-seed gourd	carcarB599

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16861	Silver-seed gourd	carcarB262
Carg16861	Cucumber (Gy14) v2	carcgybB0745
Carg16861	Cucurbita maxima (Rimu)	carcmaB1052
Carg16861	Cucurbita moschata (Rifu)	carcmoB1025
Carg16861	Cucurbita pepo (Zucchini)	carcpeB1058
Carg16861	Wild cucumber (PI 183967)	carcpiB0783
Carg16861	Cucumber (Chinese Long) v2	carcuB0766
Carg16861	Cucumber (Chinese Long) v3	carcucB0786
Carg16861	Cucumber (Chinese Long) v3	carcucB0790
Carg16861	Bottle gourd (USVL1VR-Ls)	carlsiB687
Carg16861	Melon (DHL92) v3.6.1	carmedB0760
Carg16861	Watermelon (Charleston Gray)	carwcgB0728
Carg16861	Watermelon (97103) v1	carwmB0753
Carg16861	Watermelon (97103) v2	carwmbB0787