CmoCh19G000600 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G000600
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr19 : 327567 .. 330174 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTATAGTCTCTATTTACTATTTATTTAGTTAATCTTCTCGTCTTGCTTTTTTCAGAATCGATTATTAAAGTTCTGGAGTAAATTTACCAATGCCGTCCCTTTTTTTTTTCCTTTTTAATTTTGGCATGCAGTTTGATTGTAATACATGATTTTTCTTCAATATTGATAAACATTTTCACAAGTTCCACCACGGTACACTCATTTGCTCCTATGCTCTGTTCACATCTTGTGCCAATACTTTAATTTAGCTCAAAGTAGTTTAAGAAACTAACCATTATGGATTGACCTAATGGTTAATGGTTATTGGTGCAAGTAAAAAAGGTATAACACTTTGAAAGAACGGTTCAGATTTCATGGAGGTCACTTATGACATCACCTACCTAGGATATTAAAATTCTACCAGGTTCCTGACAACCAAATGTTTCAAGGTTAGGCAGTTGTCTTCTGAGATTACTCAAAGTATGGGTGAACTAGTTTGGAAAGCCTCTGAACTATTATTAGATAATTTACGAAATGCATATAAGAGTACTGGTTAATCCATTAAAGAATACATAATATGGAATGGTCCTATGATATAAATTAACGATAATACAAGATTTGAAGATTTTGTCAAAGCTTTTTATTTGAGTGTTCTCCTGCTGCCATGTAAACATGGAGAGGATTCTCTACTCTATTTCAAATATCTAGAGCTTTCTAATTGTTCATATCTTTCATTGTAGACTTCGATATAAACACAATCTTTTCGGTAGTGTATCCATTATTGTTGAGTGTAAGGTAATTGTATTCTATTTTATTATTTAACTTCTACTAGAAAATCAACTGTGACCAAGTATTTATTTGGTAGATTGTTAGAAGAAGTTGGCTAAGTCTGCTATCTCGTGCCTCCTGATTTCAGATTTAAGATCATGCCTTGCACATTGAACCATTAGATATTCCACTAATACTACTTGAGTGAATGCATATCAAGATTTTTCTTTAGCAATGCTTTAGTCTTTTACCAAGATGCTCCAACCATCACTATGTTAGCTCTATCTTCAACTCTGCATGGAAGGCCCCTTCTTTAGTTGCTTTTGGGATGTTTTTCTGGGATTTGTTTCAGTTATTGGAATTTCACCCATCAAAACTCAAGTCTTTTCTTGATGGAGCTGAACACTGCTTGTTATAGCAAGAGTGTGTTCGAGATTGCTCTAGGTGAATAGTTTTTCTTTTTCAACAAATATTTTTGGGAAAAAAAAAAGGTTAAATACTATGGATTCCATTTCGTTCCAGTGCTTGTACTCTTAATTGTCCAATTTAGTTTTTGTAGTTTTAATTATTCATTTAGTGTTTTTACTTTCAATAAATCTTAAATTTAGTCCTTCAATAATTGGTTAAATAATAATAGTAAAAAGACACCATGTGAATATATTTTCAAAATTTATACCGACTGAACTTTTCTTTTTGAAAAAATCAACTATGAACTAATAGCAAGGACTAAACTTAAGATTTATTAACAGTGCTAGGACTAAATTTGGATATGTGATAGTACAAAAACTAAAATAGAACAAAACCAGAACCAGAAGTGGAAGGTTAAAAAGGATATTGGGAGGAAGTAGCTAATTCTATGAGCATTTGAAAATGCATTGAGGTATCTTTAAAATTTTCGAAGTGACTTTTTGACCTTTAGTGAAGGATGATTGAAAATAATTTTTAATTAGTTAAAAGCATTTTTCTAGCCCGTTGCTAATGTTCTAAAGTGGGTCAAATTGATTGGAAAAAAATACTGAAGAATCAGAGTGCCTCATCCTGCTCCAAAAGATGAGTTGGAAAACATTTCTCAACACTATAAATAGTCCTATTCCCTTCATAGAATCAACACTAGGTCTACCTGATGCCTCTATCTCATCTTTTTCATTGATAACAAAATGTATTGGTTTGGTTTAAAGTCCAACCATATATGAGGTTGAAGATTCAATCCTCGAACCTTTTGTTCGATGTATCATGGATTAACTAGTTGAGTCGTGATCGGTTTAGTTCAAGAGTTTAAATTGTTGTAGTTGTCTATTAAGATGTTAAATATCTGTTGGTTGAAGGGTGCGGAAGTCGGTATGGATACTTTTGATTATCAAAACAATATTATAAAGAACCCAAATTCAAAAATCATAAAAGCCAAACTCATCCCTGTAGTCTTGAGCCAGCCAGAAATACCACACGCTTTCAACTTTATTGCTTTCACCTTTGGTTCATATCTAGGAATCTGTTCCCTAAGAGTACACATCTTTTTCTTTTTTAGCATGTGATTGTGTCAAGATTGAAGAAAGCTGTGCCAGTCACTGTCAAATGCAATCTTCTTGGCTGTACTGGCCAAGCAAAAACACTACCACACTTTGTTCTTTAGGGAGATAAAGTCCCCTTACTATGTTGAATTTGTTATCCATGTAGGGCTACTGGCTACTACTGTGTATGAATTGCAGGCTGAAGATTCCTTTCTAACAGATGATTATGAACATGTTATTGTTGATATTTCAGAGTTGCCCACTTTCCAAGGCTGTATTTTAATGCCCCTTGGTCCCATTATCAAGAACAAAACTCTGGTATCAGATTCTCAGAATATTGCATTATAA

mRNA sequence

ATGAAACTTCGATATAAACACAATCTTTTCGGTAGTGTATCCATTATTGTTGAGTGTAAGAAAATCAACTGTGACCAAAACCCAAATTCAAAAATCATAAAAGCCAAACTCATCCCTGTAGTCTTGAGCCAGCCAGAAATACCACACGCTTTCAACTTTATTGCTTTCACCTTTGGTTCATATCTAGGAATCTGTTCCCTAAGACATGTGATTGTGTCAAGATTGAAGAAAGCTGTGCCAGTCACTGTCAAATGCAATCTTCTTGGCTGTACTGGCCAAGCAAAAACACTACCACACTTTTCCCCTTACTATGTTGAATTTGTTATCCATGTAGGGCTACTGGCTACTACTGTGTATGAATTGCAGGCTGAAGATTCCTTTCTAACAGATGATTATGAACATGTTATTGTTGATATTTCAGAGTTGCCCACTTTCCAAGGCTGTATTTTAATGCCCCTTGGTCCCATTATCAAGAACAAAACTCTGGTATCAGATTCTCAGAATATTGCATTATAA

Coding sequence (CDS)

ATGAAACTTCGATATAAACACAATCTTTTCGGTAGTGTATCCATTATTGTTGAGTGTAAGAAAATCAACTGTGACCAAAACCCAAATTCAAAAATCATAAAAGCCAAACTCATCCCTGTAGTCTTGAGCCAGCCAGAAATACCACACGCTTTCAACTTTATTGCTTTCACCTTTGGTTCATATCTAGGAATCTGTTCCCTAAGACATGTGATTGTGTCAAGATTGAAGAAAGCTGTGCCAGTCACTGTCAAATGCAATCTTCTTGGCTGTACTGGCCAAGCAAAAACACTACCACACTTTTCCCCTTACTATGTTGAATTTGTTATCCATGTAGGGCTACTGGCTACTACTGTGTATGAATTGCAGGCTGAAGATTCCTTTCTAACAGATGATTATGAACATGTTATTGTTGATATTTCAGAGTTGCCCACTTTCCAAGGCTGTATTTTAATGCCCCTTGGTCCCATTATCAAGAACAAAACTCTGGTATCAGATTCTCAGAATATTGCATTATAA
Homology
[Close]
BLAST of CmoCh19G000600 vs. TrEMBL
Match: A0A0A0LLQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G224270 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.6e-17
Identity = 64/129 (49.61%), Postives = 75/129 (58.14%), Query Frame = 1 

Query: 26  QNPNSKIIKAKLIPVVLSQPEIPHAFNFIAFTFGSYLGICSLRHVIVSRLKKAVPVTVKC 85
           ++ NS+  K K++        +    N   FT      + S  HVIVSRLKKAVP+TVKC
Sbjct: 77  KDKNSREPKFKILKTQTDLCRLDPDRNTTPFTL-----LLSPLHVIVSRLKKAVPITVKC 136

Query: 86  NLLGCTGQAKTLPHFSPYYVEFVIHVGLLATTVYELQAEDSFLTDDYEHVIVDIS-ELPT 145
           NLLG TG+AKT PHF           G LAT   EL  +DS  +DD EHVIVDIS   PT
Sbjct: 137 NLLGLTGKAKTPPHF-----------GYLATEC-ELPFKDSLQSDDCEHVIVDISGHFPT 188

Query: 146 FQGCILMPL 154
           FQGCILM L
Sbjct: 197 FQGCILMLL 188

[Close]
BLAST of CmoCh19G000600 vs. NCBI nr
Match: gi|700206568|gb|KGN61687.1| (hypothetical protein Csa_2G224270 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 9.5e-17
Identity = 64/129 (49.61%), Postives = 75/129 (58.14%), Query Frame = 1 

Query: 26  QNPNSKIIKAKLIPVVLSQPEIPHAFNFIAFTFGSYLGICSLRHVIVSRLKKAVPVTVKC 85
           ++ NS+  K K++        +    N   FT      + S  HVIVSRLKKAVP+TVKC
Sbjct: 77  KDKNSREPKFKILKTQTDLCRLDPDRNTTPFTL-----LLSPLHVIVSRLKKAVPITVKC 136

Query: 86  NLLGCTGQAKTLPHFSPYYVEFVIHVGLLATTVYELQAEDSFLTDDYEHVIVDIS-ELPT 145
           NLLG TG+AKT PHF           G LAT   EL  +DS  +DD EHVIVDIS   PT
Sbjct: 137 NLLGLTGKAKTPPHF-----------GYLATEC-ELPFKDSLQSDDCEHVIVDISGHFPT 188

Query: 146 FQGCILMPL 154
           FQGCILM L
Sbjct: 197 FQGCILMLL 188

The following BLAST results are available for this feature:
BLAST of CmoCh19G000600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh19G000600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLQ0_CUCSA6.6e-1749.61Uncharacterized protein OS=Cucumis sativus GN=Csa_2G224270 PE=4 SV=1[more]
BLAST of CmoCh19G000600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh19G000600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206568|gb|KGN61687.1|9.5e-1749.61hypothetical protein Csa_2G224270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G000600.1CmoCh19G000600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G000600Csa2G224270Cucumber (Chinese Long) v2cmocuB498
CmoCh19G000600Cp4.1LG15g00550Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G000600Carg16859Silver-seed gourdcarcmoB1021
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G000600Watermelon (97103) v2cmowmbB521
CmoCh19G000600Wax gourdcmowgoB0654
CmoCh19G000600Cucurbita moschata (Rifu)cmocmoB387
CmoCh19G000600Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G000600Cucurbita maxima (Rimu)cmacmoB598
CmoCh19G000600Wild cucumber (PI 183967)cmocpiB504
CmoCh19G000600Melon (DHL92) v3.5.1cmomeB464
CmoCh19G000600Watermelon (Charleston Gray)cmowcgB466
CmoCh19G000600Watermelon (97103) v1cmowmB485
CmoCh19G000600Cucurbita pepo (Zucchini)cmocpeB498
CmoCh19G000600Bottle gourd (USVL1VR-Ls)cmolsiB470
CmoCh19G000600Cucumber (Gy14) v2cgybcmoB207
CmoCh19G000600Cucumber (Gy14) v2cgybcmoB765
CmoCh19G000600Melon (DHL92) v3.6.1cmomedB537
CmoCh19G000600Melon (DHL92) v3.6.1cmomedB546
CmoCh19G000600Silver-seed gourdcarcmoB1055
CmoCh19G000600Cucumber (Chinese Long) v3cmocucB0596
CmoCh19G000600Cucumber (Chinese Long) v3cmocucB0606
CmoCh19G000600Cucumber (Chinese Long) v3cmocucB0620