Carg16859 (gene) Silver-seed gourd

Overview
NameCarg16859
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_105 : 333763 .. 336367 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTATAGTCTCTATTTACTATTTATTTAGTTAATCTTCTCGTCTTGCTTTTTTCAGAATCGATTATTAAAGTTCTGGAGTAAATTTACCAATGCCGTCCCTTTTTTTTTTCCTTTTTAATTTTGGCATGCAGTTTGATTGTAATACATGATTTTTCTTCAATATTGATAAACATTTTCACAAGTTCCACCACGGTACACTCATTTGCTCCTATGCTCTGTTCACATCTTGTGCCAATACTTTAATTTAGCTCAAAGTAGTTTAAGAAACTAACCATTATGGATTGACCTAATGGTTAATGGTTATTGGTGCAAGTAAAAAAGGTATAACACTTTGAAAGAACGGTTCAGATTTCATGGAGGTCACTTATGACATCACCTACCTAGGATATTAAAATTCTACCAGGTTCCTGCCAACCAAATGTTTCAAGGTTAGGCAGTTGTCTTCTGAGATTACTCAAAGTATGGGTGAACTAGTTTGGAAAGCCTCTGAACTATTATTAGATGATTTACGAAATGCATATAAGAGTACAGGTTAATCCATTAAAGAATACATAATATGGAATGGTCCTATGATATAAATTAACGATAATACAAGATTTGAAGATTTTGTCAAAGCTTTTTATTTGAGTGTTCTCCTGCTGCCATGTAAACATGGAGAGGATTCTCTACTCTATTTCAAATATCTAGAGCTTTCTAATTGTTCATATCTTTCATTGTAGACTTCGATATAACACAATCTTTTCGGTAGTGTATCCATTATTGTTGAGTGTAAGGTAATTGTATTCTATTTTATTATTTAACTTCTACTAGAAAATCAACTGTGACCAAGTATTTATTTGGTAGATTGTTAGAAGAAGTTGGCTAAGTCTGCTATCTCGTGCCTCCTGATTTCAGATTTAAGATCATGCCTTGCACATTGAACCATTAGATATCCCACTAATACTACTTGAGTGAATGCATATCAAGATTTTTCTTTAGCAATGCTTTAGTCTTTTACCAAGATGCTCCAACCATCACTATGTTAGCTCTATCTTCAACTCTGCATGGAAGGCCCCTTCTTTAGTTGCTTTTGGGATGTTTTTCTGGGATTTGTTTCAGTTATTAGAATTTCACCCATCAAAACTCAAGTCTTTTCTTGATGGAGCTGAACACTGCTTGTTATAGCAAGAGTGTGTTCGAGATTGCTCTAGGTGAATAGTTTTTCTTTTTCAACAAATATTTTTGGGAAAAAAAAAAGTTAAATACTATGGATTCCATTTCGTTCCAGTGCTTGTACTCTTAATTGTCCAATTTAGTTTTTGTAGTTTTAATTATTCATTTAGTGTTTTTACTTTCAATAAATCTTAAATTTAGTCCTTCAATAATTGGTTAAATAATAATAGTAAAAAGACACCATGTGAATATATTTTCAAAATTTATACCGACTGAACTTTTCTTTTTGAAAAAATCAACTATGAACTAATAGCAAGGACTAAACTTAAGATTTATCAACAGTGCTAGGACTAAATTTGGATATGTGATAGTACAAAAACTAAAATAGAACAAAACCAGAACCAGAAGTGGAAGGTTAAAAAGGATATTGGGAGGAAGTAGCTAATTCTATGAGCATTTGAAAATGCTTTGAGGTATCTTTAAAATTTTCGAAGTGACTTTTTGACCTTTAGTGAAGGATGATTGAAAATAATTTTTAATTAGTTAAAAGCATTTTTCTAGCCCGTTGCTAATGTTCTAAAGTGGGTCAAATTGATTGGAAAAAAATACTGAAGAATCAGAGTGCCTCATCCTGCTCCAAAAGATGAGTTGGAAAACATTTCTCAACACTATAAATAGTCCTATTCCCTTCATAGAATCAACATTAGGTCTACCTGATGCCTCTATCTCATCTTTTTCATTGATAACAAAATGTATTGGTTTGGTTTAAAGGCCAACCATATATGAGGTTGAAGATTCAATCCTCGAACCTTTTGTTCGATGTATCATGGATTAACTAGTTGAGTCGTGCTCGGTTTAGTTCAAGAGTTTAAATTGTTGTAGTCGTCTATTAAGATGTTAAATATCCGTTGGTTGAAGGGTGCGGAAGTCGGTAGGGATACTTTTGATTATCAAAACAATATTATAAAGAACCCAAATTCAAAAATCATAAAAGCCAAAGTCATCCCTGTAGTCTTGAGCCAGCCAGAAATACCACACGCTTTCAACTTTATTGCTTTCACCTTTGGTTCATATCTAGGAATCTGTTCCCTAAGAGTACACATCTTTTTCTTTTTTAGCATGTGATTGTGTCAAGATTGAAGAAAGCTGTGCCAGTCACTGTCAAATGCAATCTTCTTGGCTGTACTGGCCAAGCAAAAACACTACCACACTTTGTTCTTTAGGGAGATAAAGCCCCTTGCTATGTTGAATTTGTTATCCATGTAGGGCTACTGGCTACTACTGTGTATGAATTGCAGGCTGAAGATTCCTTTCTAACAGATGATTATGAACATGTTATTGTTGATATTTCAGAGTTGCCCACTTTCCAAGGCTGTATTTTAATGCCCCTTGGTCTCATTATCAAGAACAAAACTCTGGTATCAGATTCTCAGAATATTGCATTATAA

mRNA sequence

ATGAATTTGATTGTAATACATGATTTTTCTTCAATATTGATAAACATTTTCACAAGTTCCACCACGAAAATCAACTGTGACCAAAATTTCACCCATCAAAACTCAAGTCTTTTCTTGATGGAGCTGAACACTGCTTGTTATAGCAAGAGTGTGTTCGAGATTGCTCTAGGCCAACCATATATGAGGTTGAAGATTCAATCCTCGAACCTTTTGTTCGATTCGTCTATTAAGATGTTAAATATCCGTTGGTTGAAGGGTGCGGAAGTCGGTAGGGATACTTTTGATTATCAAAACAATATTATAAAGAACCCAAATTCAAAAATCATAAAAGCCAAAGTCATCCCTGTAGTCTTGAGCCAGCCAGAAATACCACACGCTTTCAACTTTATTGCTTTCACCTTTGGTTCATATCTAGGAATCTGTTCCCTAAGACATGTGATTGTGTCAAGATTGAAGAAAGCTGTGCCAGTCACTGTCAAATGCAATCTTCTTGGCTGTACTGGCCAAGCAAAAACACTACCACACTTTGGAGATAAAGCCCCTTGCTATGTTGAATTTGTTATCCATGTAGGGCTACTGGCTACTACTGTGTATGAATTGCAGGCTGAAGATTCCTTTCTAACAGATGATTATGAACATGTTATTGTTGATATTTCAGAGTTGCCCACTTTCCAAGGCTGTATTTTAATGCCCCTTGGTCTCATTATCAAGAACAAAACTCTGGTATCAGATTCTCAGAATATTGCATTATAA

Coding sequence (CDS)

ATGAATTTGATTGTAATACATGATTTTTCTTCAATATTGATAAACATTTTCACAAGTTCCACCACGAAAATCAACTGTGACCAAAATTTCACCCATCAAAACTCAAGTCTTTTCTTGATGGAGCTGAACACTGCTTGTTATAGCAAGAGTGTGTTCGAGATTGCTCTAGGCCAACCATATATGAGGTTGAAGATTCAATCCTCGAACCTTTTGTTCGATTCGTCTATTAAGATGTTAAATATCCGTTGGTTGAAGGGTGCGGAAGTCGGTAGGGATACTTTTGATTATCAAAACAATATTATAAAGAACCCAAATTCAAAAATCATAAAAGCCAAAGTCATCCCTGTAGTCTTGAGCCAGCCAGAAATACCACACGCTTTCAACTTTATTGCTTTCACCTTTGGTTCATATCTAGGAATCTGTTCCCTAAGACATGTGATTGTGTCAAGATTGAAGAAAGCTGTGCCAGTCACTGTCAAATGCAATCTTCTTGGCTGTACTGGCCAAGCAAAAACACTACCACACTTTGGAGATAAAGCCCCTTGCTATGTTGAATTTGTTATCCATGTAGGGCTACTGGCTACTACTGTGTATGAATTGCAGGCTGAAGATTCCTTTCTAACAGATGATTATGAACATGTTATTGTTGATATTTCAGAGTTGCCCACTTTCCAAGGCTGTATTTTAATGCCCCTTGGTCTCATTATCAAGAACAAAACTCTGGTATCAGATTCTCAGAATATTGCATTATAA

Protein sequence

MNLIVIHDFSSILINIFTSSTTKINCDQNFTHQNSSLFLMELNTACYSKSVFEIALGQPYMRLKIQSSNLLFDSSIKMLNIRWLKGAEVGRDTFDYQNNIIKNPNSKIIKAKVIPVVLSQPEIPHAFNFIAFTFGSYLGICSLRHVIVSRLKKAVPVTVKCNLLGCTGQAKTLPHFGDKAPCYVEFVIHVGLLATTVYELQAEDSFLTDDYEHVIVDISELPTFQGCILMPLGLIIKNKTLVSDSQNIAL
Homology
[Close]
BLAST of Carg16859 vs. NCBI nr
Match: KGN61687.1 (hypothetical protein Csa_2G224270 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-17
Identity = 74/170 (43.53%), Postives = 91/170 (53.53%), Query Frame = 0 

Query: 66  QSSNLLFDSSIKMLNIRWLKGAEVGRDT--FDYQNNIIKNPNSKIIKAKVIPVVLSQPEI 125
           + SN +F SS + L      G + GR     D+ ++  K+ NS+  K K++        +
Sbjct: 45  ERSNSVFLSSPEGL------GGKGGRRAAGVDFYDDEKKDKNSREPKFKILKTQTDLCRL 104

Query: 126 PHAFNFIAFTFGSYLGICSLRHVIVSRLKKAVPVTVKCNLLGCTGQAKTLPHFGDKAPCY 185
               N   FT      + S  HVIVSRLKKAVP+TVKCNLLG TG+AKT PHFG  A   
Sbjct: 105 DPDRNTTPFTL-----LLSPLHVIVSRLKKAVPITVKCNLLGLTGKAKTPPHFGYLA--- 164

Query: 186 VEFVIHVGLLATTVYELQAEDSFLTDDYEHVIVDIS-ELPTFQGCILMPL 233
                       T  EL  +DS  +DD EHVIVDIS   PTFQGCILM L
Sbjct: 165 ------------TECELPFKDSLQSDDCEHVIVDISGHFPTFQGCILMLL 188

[Close]
BLAST of Carg16859 vs. TrEMBL
Match: tr|A0A0A0LLQ0|A0A0A0LLQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G224270 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.5e-18
Identity = 74/170 (43.53%), Postives = 91/170 (53.53%), Query Frame = 0 

Query: 66  QSSNLLFDSSIKMLNIRWLKGAEVGRDT--FDYQNNIIKNPNSKIIKAKVIPVVLSQPEI 125
           + SN +F SS + L      G + GR     D+ ++  K+ NS+  K K++        +
Sbjct: 45  ERSNSVFLSSPEGL------GGKGGRRAAGVDFYDDEKKDKNSREPKFKILKTQTDLCRL 104

Query: 126 PHAFNFIAFTFGSYLGICSLRHVIVSRLKKAVPVTVKCNLLGCTGQAKTLPHFGDKAPCY 185
               N   FT      + S  HVIVSRLKKAVP+TVKCNLLG TG+AKT PHFG  A   
Sbjct: 105 DPDRNTTPFTL-----LLSPLHVIVSRLKKAVPITVKCNLLGLTGKAKTPPHFGYLA--- 164

Query: 186 VEFVIHVGLLATTVYELQAEDSFLTDDYEHVIVDIS-ELPTFQGCILMPL 233
                       T  EL  +DS  +DD EHVIVDIS   PTFQGCILM L
Sbjct: 165 ------------TECELPFKDSLQSDDCEHVIVDISGHFPTFQGCILMLL 188

The following BLAST results are available for this feature:
BLAST of Carg16859 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61687.11.4e-1743.53hypothetical protein Csa_2G224270 [Cucumis sativus][more]
BLAST of Carg16859 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg16859 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg16859 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LLQ0|A0A0A0LLQ0_CUCSA9.5e-1843.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G224270 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16859-RACarg16859-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16859CmoCh19G000600Cucurbita moschata (Rifu)carcmoB1021
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg16859Silver-seed gourdcarcarB262
Carg16859Silver-seed gourdcarcarB599
Carg16859Cucumber (Gy14) v2carcgybB0745
Carg16859Cucumber (Gy14) v2carcgybB0749
Carg16859Cucurbita maxima (Rimu)carcmaB1052
Carg16859Cucurbita maxima (Rimu)carcmaB1049
Carg16859Cucurbita maxima (Rimu)carcmaB1051
Carg16859Cucurbita moschata (Rifu)carcmoB1023
Carg16859Cucurbita moschata (Rifu)carcmoB1025
Carg16859Cucurbita pepo (Zucchini)carcpeB1057
Carg16859Cucurbita pepo (Zucchini)carcpeB1058
Carg16859Cucurbita pepo (Zucchini)carcpeB1062
Carg16859Wild cucumber (PI 183967)carcpiB0783
Carg16859Wild cucumber (PI 183967)carcpiB0789
Carg16859Cucumber (Chinese Long) v2carcuB0766
Carg16859Cucumber (Chinese Long) v2carcuB0771
Carg16859Cucumber (Chinese Long) v3carcucB0786
Carg16859Cucumber (Chinese Long) v3carcucB0790
Carg16859Cucumber (Chinese Long) v3carcucB0792
Carg16859Bottle gourd (USVL1VR-Ls)carlsiB687
Carg16859Bottle gourd (USVL1VR-Ls)carlsiB689
Carg16859Melon (DHL92) v3.5.1carmeB0746
Carg16859Melon (DHL92) v3.6.1carmedB0759
Carg16859Melon (DHL92) v3.6.1carmedB0760
Carg16859Watermelon (Charleston Gray)carwcgB0728
Carg16859Watermelon (Charleston Gray)carwcgB0730
Carg16859Watermelon (97103) v1carwmB0750
Carg16859Watermelon (97103) v1carwmB0753
Carg16859Watermelon (97103) v2carwmbB0787
Carg16859Watermelon (97103) v2carwmbB0788
Carg16859Wax gourdcarwgoB0888