CmoCh18G013790 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G013790
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionHeavy metal transport/detoxification superfamily protein
LocationCmo_Chr18 : 12854805 .. 12855318 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAATTTGCAAATAGTTCCGGCTCACACCCCATTTCATGTGGAGCCTCAGCTGGTGGAGATGATGGTTCCCCTTTATTCTCATGGTTGCGCCAACAAAATCCACAAGGCTCTCTCCCATCTCAAAGGTCTTATTTTGATTTTTAGTACAACACCCATCTATATATTCTCCAAAACCTCACACTAACAACATGCATGGTATGATTGCAGGGATATATTCAGTTAACGTAGATTACGAGGAGCAGAAAGTGACGGTGTGGGGAATATGCAACAAAAACCAAGTGTTGAGCACTGTGAGAAGCAAGAGAAAAGCAGCTCGTTTTTGGAACAATGATGATGATGATAACAATAATAATGATCCACAAGCAGAAGAAGAAGGTCTAAACTCAAGAAGGCCTTCTTTTGGTGTTAACAAGCTTCGTTCCCTCAGTTTCAAATTAGCCTGCAAGAAGGTTTTCACCACTACAAGATCATATTCCTTGCGTATCTTTGGGGCTCCTACTGTTTCCTAA

mRNA sequence

ATGGCTAATTTGCAAATAGTTCCGGCTCACACCCCATTTCATGTGGAGCCTCAGCTGGTGGAGATGATGGTTCCCCTTTATTCTCATGGTTGCGCCAACAAAATCCACAAGGCTCTCTCCCATCTCAAAGTACAACACCCATCTATATATTCTCCAAAACCTCACACTAACAACATGCATGGTATGATTGCAGGGATATATTCAGTTAACGTAGATTACGAGGAGCAGAAAGTGACGGTGTGGGGAATATGCAACAAAAACCAAGTGTTGAGCACTGTGAGAAGCAAGAGAAAAGCAGCTCGTTTTTGGAACAATGATGATGATGATAACAATAATAATGATCCACAAGCAGAAGAAGAAGGTCTAAACTCAAGAAGGCCTTCTTTTGGTGTTAACAAGCTTCGTTCCCTCAGTTTCAAATTAGCCTGCAAGAAGGTTTTCACCACTACAAGATCATATTCCTTGCGTATCTTTGGGGCTCCTACTGTTTCCTAA

Coding sequence (CDS)

ATGGCTAATTTGCAAATAGTTCCGGCTCACACCCCATTTCATGTGGAGCCTCAGCTGGTGGAGATGATGGTTCCCCTTTATTCTCATGGTTGCGCCAACAAAATCCACAAGGCTCTCTCCCATCTCAAAGTACAACACCCATCTATATATTCTCCAAAACCTCACACTAACAACATGCATGGTATGATTGCAGGGATATATTCAGTTAACGTAGATTACGAGGAGCAGAAAGTGACGGTGTGGGGAATATGCAACAAAAACCAAGTGTTGAGCACTGTGAGAAGCAAGAGAAAAGCAGCTCGTTTTTGGAACAATGATGATGATGATAACAATAATAATGATCCACAAGCAGAAGAAGAAGGTCTAAACTCAAGAAGGCCTTCTTTTGGTGTTAACAAGCTTCGTTCCCTCAGTTTCAAATTAGCCTGCAAGAAGGTTTTCACCACTACAAGATCATATTCCTTGCGTATCTTTGGGGCTCCTACTGTTTCCTAA
Homology
[Close]
BLAST of CmoCh18G013790 vs. TrEMBL
Match: M0ZIL1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000557 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.5e-31
Identity = 83/154 (53.90%), Postives = 99/154 (64.29%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           MAN+QIVPA    +VEPQ VEMMVPLYS+GC  KI+ ALSH+K                 
Sbjct: 1   MANMQIVPAGRNVNVEPQYVEMMVPLYSYGCERKINNALSHIK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDDDDNNNNDPQAEEE 120
               GIYSVNVD+E+QKVTVWGICNK  VL+TVRSKRKAARFWN +D+    ++  +   
Sbjct: 61  ----GIYSVNVDFEQQKVTVWGICNKYDVLATVRSKRKAARFWNTEDNMEEYSETDSSAT 120

Query: 121 GLNSRRPSFGVNKLRSLSFKLACKKVFTTTRSYS 155
                RP   + + RSLS+KLA KK F  TRSYS
Sbjct: 121 CRYRIRPPLALIRARSLSWKLALKKAF--TRSYS 131

[Close]
BLAST of CmoCh18G013790 vs. TrEMBL
Match: K4BHY7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.9e-31
Identity = 83/160 (51.88%), Postives = 101/160 (63.12%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           MAN+QIVPA    +VEPQ VEMMVPLYS+GC  KI+ ALSH+K                 
Sbjct: 1   MANMQIVPAGRNVNVEPQYVEMMVPLYSYGCERKINNALSHIK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDDD------DNNNND 120
               GIYSVNVD+E+QKVT+WGICNK  VL+ VRSKRKAARFWN +D+      D++++ 
Sbjct: 61  ----GIYSVNVDFEQQKVTIWGICNKYDVLARVRSKRKAARFWNEEDNMEESERDSSSSS 120

Query: 121 PQAEEEGLNSRRPSFGVNKLRSLSFKLACKKVFTTTRSYS 155
           P A    +  R     + + RSLS KLA KK F  TRSYS
Sbjct: 121 PAASRYRIRPRAQPLALIRARSLSLKLALKKAF--TRSYS 137

[Close]
BLAST of CmoCh18G013790 vs. TrEMBL
Match: V7B618_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G189400g PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.8e-27
Identity = 83/158 (52.53%), Postives = 99/158 (62.66%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           MAN+QIVPA+    VE Q VEMMVPLYS+GC  KI KA S+LK                 
Sbjct: 1   MANMQIVPAYKNI-VEAQYVEMMVPLYSYGCEKKIKKAFSNLK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDDDD--NNNNDPQAE 120
               GIYS+NVDY +QKVTVWGICNKN VL TVRSKRK ARFWN +D+   + +  P + 
Sbjct: 61  ----GIYSLNVDYYQQKVTVWGICNKNDVLETVRSKRKEARFWNQEDNVVLDKSQSPLSS 120

Query: 121 EEGLNSR--RPSFGVNKLRSLSFKLACKKVFTTTRSYS 155
               + +  +PS  + K+RSLS K A KKVF  TRSYS
Sbjct: 121 PSLFSQKDFKPSLALTKVRSLSLK-AWKKVF--TRSYS 133

[Close]
BLAST of CmoCh18G013790 vs. TrEMBL
Match: A0A061G9N4_THECC (Heavy metal transport/detoxification superfamily protein OS=Theobroma cacao GN=TCM_015528 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.7e-26
Identity = 82/158 (51.90%), Postives = 95/158 (60.13%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           MAN+QIV A    +VEPQ VEMMVPLYS+GC  K+ K LSHLK                 
Sbjct: 1   MANMQIVVASK--NVEPQYVEMMVPLYSYGCERKVKKTLSHLK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDD----DDNNNNDPQ 120
               GIYSV VDY +QKVTVWGICNK  VLST+RSKRK ARFW  +D    ++   + P 
Sbjct: 61  ----GIYSVTVDYNQQKVTVWGICNKFDVLSTMRSKRKEARFWKPEDNIEMEEAQPSSPP 120

Query: 121 AEEEGLNSRRPSFGVNKLRSLSFKLACKKVFTTTRSYS 155
                  S +PS  + K RSLS+K A KKVF  TRSYS
Sbjct: 121 PSLRPKGSSKPSLALMKARSLSWK-AWKKVF--TRSYS 132

[Close]
BLAST of CmoCh18G013790 vs. TrEMBL
Match: A0A0B2SPN3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_039931 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.8e-26
Identity = 82/159 (51.57%), Postives = 98/159 (61.64%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           MAN+QIVPA+    VE Q VEMMVPLYS+GC  KI K LS+LK                 
Sbjct: 1   MANMQIVPAYKTI-VEAQYVEMMVPLYSYGCEKKIKKTLSNLK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDDD---DNNNNDPQA 120
               GIYSVNVDY +QKVTVWGICNK  VL TVRSKRK A+FWN +D+   + + +   +
Sbjct: 61  ----GIYSVNVDYYQQKVTVWGICNKYDVLETVRSKRKEAQFWNQEDNVVLEKSQSPSSS 120

Query: 121 EEEGLNSR--RPSFGVNKLRSLSFKLACKKVFTTTRSYS 155
                  +  +PSF + K+RSLS K A KKVF  TRSYS
Sbjct: 121 PPPPFPHKDFKPSFALTKVRSLSLK-AWKKVF--TRSYS 134

[Close]
BLAST of CmoCh18G013790 vs. TAIR10
Match: AT4G27590.2 (AT4G27590.2 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-24
Identity = 60/112 (53.57%), Postives = 71/112 (63.39%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           M +LQIVP +    VE Q VEMMVPLYS+GC  K+ +ALSHLK                 
Sbjct: 1   MGDLQIVPVYNK--VEAQYVEMMVPLYSYGCEKKVKRALSHLK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDDDDNNN 113
               GIYSV VDY  QKVTVWGICNK  VL+ V+ KRK ARFWN ++++NNN
Sbjct: 61  ----GIYSVKVDYYNQKVTVWGICNKLDVLAMVKKKRKEARFWNVEEEENNN 89

[Close]
BLAST of CmoCh18G013790 vs. NCBI nr
Match: gi|565361569|ref|XP_006347528.1| (PREDICTED: uncharacterized protein LOC102593133 [Solanum tuberosum])

HSP 1 Score: 142.9 bits (359), Expect = 5.0e-31
Identity = 83/154 (53.90%), Postives = 99/154 (64.29%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           MAN+QIVPA    +VEPQ VEMMVPLYS+GC  KI+ ALSH+K                 
Sbjct: 1   MANMQIVPAGRNVNVEPQYVEMMVPLYSYGCERKINNALSHIK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDDDDNNNNDPQAEEE 120
               GIYSVNVD+E+QKVTVWGICNK  VL+TVRSKRKAARFWN +D+    ++  +   
Sbjct: 61  ----GIYSVNVDFEQQKVTVWGICNKYDVLATVRSKRKAARFWNTEDNMEEYSETDSSAT 120

Query: 121 GLNSRRPSFGVNKLRSLSFKLACKKVFTTTRSYS 155
                RP   + + RSLS+KLA KK F  TRSYS
Sbjct: 121 CRYRIRPPLALIRARSLSWKLALKKAF--TRSYS 131

[Close]
BLAST of CmoCh18G013790 vs. NCBI nr
Match: gi|460378549|ref|XP_004235033.1| (PREDICTED: uncharacterized protein LOC101252962 [Solanum lycopersicum])

HSP 1 Score: 142.1 bits (357), Expect = 8.5e-31
Identity = 83/160 (51.88%), Postives = 101/160 (63.12%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           MAN+QIVPA    +VEPQ VEMMVPLYS+GC  KI+ ALSH+K                 
Sbjct: 1   MANMQIVPAGRNVNVEPQYVEMMVPLYSYGCERKINNALSHIK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDDD------DNNNND 120
               GIYSVNVD+E+QKVT+WGICNK  VL+ VRSKRKAARFWN +D+      D++++ 
Sbjct: 61  ----GIYSVNVDFEQQKVTIWGICNKYDVLARVRSKRKAARFWNEEDNMEESERDSSSSS 120

Query: 121 PQAEEEGLNSRRPSFGVNKLRSLSFKLACKKVFTTTRSYS 155
           P A    +  R     + + RSLS KLA KK F  TRSYS
Sbjct: 121 PAASRYRIRPRAQPLALIRARSLSLKLALKKAF--TRSYS 137

[Close]
BLAST of CmoCh18G013790 vs. NCBI nr
Match: gi|970016696|ref|XP_015069457.1| (PREDICTED: uncharacterized protein LOC107014108 [Solanum pennellii])

HSP 1 Score: 139.4 bits (350), Expect = 5.5e-30
Identity = 82/157 (52.23%), Postives = 98/157 (62.42%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           MAN+QIVPA    +VEPQ VEMMVPLYS+GC  KI+ ALSH+K                 
Sbjct: 1   MANMQIVPAGRNVNVEPQYVEMMVPLYSYGCERKINNALSHIK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDD---DDNNNNDPQA 120
               GIYSVNVD+E+QKVT+WGICNK  VL+ VRSKRKAARFWN +D   +   ++   A
Sbjct: 61  ----GIYSVNVDFEQQKVTIWGICNKYDVLARVRSKRKAARFWNEEDNMEESERDSSSAA 120

Query: 121 EEEGLNSRRPSFGVNKLRSLSFKLACKKVFTTTRSYS 155
              G+  R     + + RSLS KLA KK F  TRSYS
Sbjct: 121 SLYGIRPRAQPLALIRARSLSLKLALKKAF--TRSYS 134

[Close]
BLAST of CmoCh18G013790 vs. NCBI nr
Match: gi|950990420|ref|XP_014504316.1| (PREDICTED: uncharacterized protein LOC106764563 [Vigna radiata var. radiata])

HSP 1 Score: 129.0 bits (323), Expect = 7.4e-27
Identity = 82/154 (53.25%), Postives = 93/154 (60.39%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           MAN+QIVPA+    VE Q VEMMVPLYS+GC  KI K  S+LK                 
Sbjct: 1   MANMQIVPAYNNI-VEAQYVEMMVPLYSYGCEKKIKKTFSNLK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDDDDNNNNDPQAEEE 120
               GIYSVNVDY +QKVTVWGICNK  VL TVRSKRK ARFWN +D     N    + E
Sbjct: 61  ----GIYSVNVDYYQQKVTVWGICNKYDVLETVRSKRKYARFWNEED-----NVVLEKSE 120

Query: 121 GLNSRRPSFGVNKLRSLSFKLACKKVFTTTRSYS 155
                +PS  + K+RSLS K A KK+F  TRSYS
Sbjct: 121 SSKDLKPSLALTKVRSLSLK-AWKKIF--TRSYS 124

[Close]
BLAST of CmoCh18G013790 vs. NCBI nr
Match: gi|593488991|ref|XP_007141363.1| (hypothetical protein PHAVU_008G189400g [Phaseolus vulgaris])

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 83/158 (52.53%), Postives = 99/158 (62.66%), Query Frame = 1 

Query: 1   MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKVQHPSIYSPKPHTNNMH 60
           MAN+QIVPA+    VE Q VEMMVPLYS+GC  KI KA S+LK                 
Sbjct: 1   MANMQIVPAYKNI-VEAQYVEMMVPLYSYGCEKKIKKAFSNLK----------------- 60

Query: 61  GMIAGIYSVNVDYEEQKVTVWGICNKNQVLSTVRSKRKAARFWNNDDDD--NNNNDPQAE 120
               GIYS+NVDY +QKVTVWGICNKN VL TVRSKRK ARFWN +D+   + +  P + 
Sbjct: 61  ----GIYSLNVDYYQQKVTVWGICNKNDVLETVRSKRKEARFWNQEDNVVLDKSQSPLSS 120

Query: 121 EEGLNSR--RPSFGVNKLRSLSFKLACKKVFTTTRSYS 155
               + +  +PS  + K+RSLS K A KKVF  TRSYS
Sbjct: 121 PSLFSQKDFKPSLALTKVRSLSLK-AWKKVF--TRSYS 133

The following BLAST results are available for this feature:
BLAST of CmoCh18G013790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh18G013790 vs. TrEMBL
Match NameE-valueIdentityDescription
M0ZIL1_SOLTU3.5e-3153.90Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000557 PE=4 SV=1[more]
K4BHY7_SOLLC5.9e-3151.88Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
V7B618_PHAVU8.8e-2752.53Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G189400g PE=4 SV=1[more]
A0A061G9N4_THECC5.7e-2651.90Heavy metal transport/detoxification superfamily protein OS=Theobroma cacao GN=T... [more]
A0A0B2SPN3_GLYSO9.8e-2651.57Uncharacterized protein OS=Glycine soja GN=glysoja_039931 PE=4 SV=1[more]
BLAST of CmoCh18G013790 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G27590.22.2e-2453.57 Heavy metal transport/detoxification superfamily protein [more]
BLAST of CmoCh18G013790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|565361569|ref|XP_006347528.1|5.0e-3153.90PREDICTED: uncharacterized protein LOC102593133 [Solanum tuberosum][more]
gi|460378549|ref|XP_004235033.1|8.5e-3151.88PREDICTED: uncharacterized protein LOC101252962 [Solanum lycopersicum][more]
gi|970016696|ref|XP_015069457.1|5.5e-3052.23PREDICTED: uncharacterized protein LOC107014108 [Solanum pennellii][more]
gi|950990420|ref|XP_014504316.1|7.4e-2753.25PREDICTED: uncharacterized protein LOC106764563 [Vigna radiata var. radiata][more]
gi|593488991|ref|XP_007141363.1|1.3e-2652.53hypothetical protein PHAVU_008G189400g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006121HMA_dom
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G013790.1CmoCh18G013790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006121Heavy metal-associated domain, HMAunknownSSF55008HMA, heavy metal-associated domaincoord: 20..104
score: 8.4
NoneNo IPR availableGENE3DG3DSA:3.30.70.100coord: 16..104
score: 5.
NoneNo IPR availablePANTHERPTHR22814COPPER TRANSPORT PROTEIN ATOX1-RELATEDcoord: 65..120
score: 1.8E-46coord: 3..43
score: 1.8
NoneNo IPR availablePANTHERPTHR22814:SF49HEAVY METAL ASSOCIATED DOMAIN-CONTAINING PROTEINcoord: 65..120
score: 1.8E-46coord: 3..43
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh18G013790CmaCh18G013450Cucurbita maxima (Rimu)cmacmoB406
CmoCh18G013790Cla002399Watermelon (97103) v1cmowmB363
CmoCh18G013790ClCG07G009640Watermelon (Charleston Gray)cmowcgB367
CmoCh18G013790Lsi07G003240Bottle gourd (USVL1VR-Ls)cmolsiB378
CmoCh18G013790Cp4.1LG09g00020Cucurbita pepo (Zucchini)cmocpeB376
CmoCh18G013790Cla97C07G136440Watermelon (97103) v2cmowmbB414
CmoCh18G013790Carg20312Silver-seed gourdcarcmoB0732
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G013790Silver-seed gourdcarcmoB1328
CmoCh18G013790Cucumber (Chinese Long) v3cmocucB0482
CmoCh18G013790Cucurbita moschata (Rifu)cmocmoB275
CmoCh18G013790Cucurbita maxima (Rimu)cmacmoB327
CmoCh18G013790Wild cucumber (PI 183967)cmocpiB406
CmoCh18G013790Cucurbita pepo (Zucchini)cmocpeB386