CmoCh18G012530 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G012530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mediator of RNA polymerase II transcription subunit 9
Location	Cmo_Chr18 : 12295884 .. 12299031 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATCAGAACCCCCGGCAGTTCTCGTCATTCAGGCTTATTTATCTGTGTGCATTTCCGATTGGCCGCTCCGTGTCCGGCGAGAATTCACCGGAGCTTCATAAGCTTCCCAAAACTCAATCAATCGAAAGCGCTAATTTCCTGGAACCTGAAATTCCGAAGAAGAAAGCAAATCGGCGATATGGATTTCTCTGGAGGAAACTGGAGCATGATCCCCAACATCCCTAATCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAACAATTTTCCCTTCAACAACAACAACAACAACAACAACAGCAGCAGCAGCAATCCTTTCACCACCAGCAACAGCAATTCCAGCCCCAAATTCAATCCCAGCAGCAATTTCAGCAGCAACAGCTTTCTCCCCAATTTCAACAGCAACAACCCTCGCCTCAAACCCAGCCCCAGCAACAACCCTCGCCCCAATTCCAGCAACAATTGCAGCCCCAACATTTTCCCCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAATATCATTTTCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAACAGCAACAACAGCAATATCATCAACACCAATCTCTGGCTTCCCATTTTCATCTATTTCATGTAAATGCGTACAGAAAACCTGAATTTCTAGTTTTCTCTAATGTCTGTGTTTCATGTTTGTTGACATTTTTGGATGCTTCGTGTGCTGTAGCTAGTGGAGAAATTAGCGGATACTATTGAGAATGGAGCTAGAGATCAGCAATCGGATGCATTGGTATAAATGTTGCTTGTTTTTCAAAATTTCCTTGAAGATTGATTGTAACGTTGTTTGCACCAATAATTTGTGCTTGTAACGTTTTGGAAGGTTAATGATCTTAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGGTATGTTGGAACTCTATTTTGCTTTTAAATGTATGCGCTGGCTGAAGTCTACTCTGTTTAACTGTGTTCTTCATGTGCTTGGCATAACAAATCCATCGCTGCTAACGAGACATACCACAATTGTTTGAAGTATAAATGTTCATGTTTTGAAACTTTTGTTTTATTAGTGTCTAAATGTTGGTTTAGGGCTTTTAGTCTTTCTTTTTTTATTTTTGCATTGGTGAACTTTCTTATGTGAGTTGGGAGTGATTTTACTCCTTTTTTTCATTAGAGGGGATGGAGAAAGTGGACTAAACAATCTTGCATTTCTCAGTCAAGCAGGCAAGTTCCGTTTTGTCTACATTTCTCATCAAACAAATATGGAAAAATAATCACATTGTCAACGTTCCTAACGTAACCAAGCCCTTCCACCATAGAGTCATTGTATTGTAAGTAATCCGAACCTATCCGGAGCAAGCCTGCCATATAGGCAAGTGAAGTTGGTAAACCGTTTGATGCGCAACAATCTCCTACAGTATGTTTCCTCCTAAAAATGTCTAATTGTTAGTGATGATGGTTTCAAAGACCAAAGGTTTTAGTAGGAAGTAGTACAGTTCTTTTATGCAAAGAAACGAAATAGGATATAATCTGTAGCCCGTTAACTCTTTACAATATCATGCGCACACCATTGAACTATGGACTGCTTTTGTATAGGCTCAACAGGCCTCTAAGAAATGTCCTATTTCCCTCTTCTTGTGCGACATTTATATACATGTATGCGTGTGTGTATATATGCGCCTACACACACACACACGCATTATTGTTTTGTATGTGGTTAATGATGCGTTTTCTTGTAAAGAAAAAAAATAAAATAAAAGGATGTTTATTTTTTTGGTTGCAGACAGTCGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGTATGGTGGTAGCAATTTTCTGCCTGTGGTTTGCATTAATTTGTCTTTTCCATCAAGGATACTGTTAATGATTCTCTATTATAATAGGGAATTGATTGGCAAGTATAAGAACTCTGTTGAAGAACTTGTCAAGGGCGAGTCTTAGCTACTTCTCACTCATTCGTTATTAGGTAATACTTTAACTTACTTCTCACTCATTCTCACTCATTCGTTATGGAAGAGCATAATGGGTTTTACAGTCTGATGTCGATTCTGTGCTATAAATTCTTGTTCCCTTTCAATGTAAACCCACCACTAGCAAATATTGTCCGCTTTGACTCGATACGTATCGTTGTCAGCCTCACAGTTTTAAAACGCGTCTGTTAGAGAGAGGTTTCCATACCCTTATAAGGAATGCTTCATTCTCCTCTCCAACTGATGTGAGATCTCACATTTTTGGTCAAAAAGAGGGTCCAAAGTTGCATACTATTGAACGTTGATCAATTATTCGTTGTTCTCGAATTTTGAAGGCGTTACTTGTAATTGCTGCACTAATAGCTCACTCTTTGTCAAAAGATTTTCGTTTCTTAGATAACATCTCAAAGAAAAGAAAAGGTTGCATTTCTAAGAGAGCTTTTCCCTGATAAATGAATCTGGCTTTTATATGGTTGGAGATGACTTCTGGTTTTGAAAATCTGCTATGAATTCAACGCCATGTGTGCTTAGAGATTCAATTATGGATCAGTCTCATTTTTACTGATACTCGCCTTTACAATATGCTTCACCATCTCAGACGTAGCTAGCATCATTTACCTGTTTTGGAAGGAACGCCAAAAGAGCTTTCCACCGAGTCTTGCAATTCCATGAAGGGCCTTTTTCATCTGCCTCCTGCATTTCTTAACATGATGATCATTCACGATTGAATCTTCTCTGCTCTTTGCAACGCTATGGAGCACCAAACTTTCAGGACATTCAGAGTTGATATCACCATCTCTCCTAAATCAATCTGTAAGTAACATCATGTCCTTCCCCTTTTCAACTTCTTTGATTTTCATATCAGTTAAGTAAGTTGTTGAACATTCTATTCAATTTCAATAATACAATCATTTGAGTTTGAATCTGAAGAATCTCGTCTACTCTCCCTAAACCTTCTTGTATTGAGTCCCCTGCTCTTTGAACATATAAACCTTCTTCTTCAACTCAATTCAGCTGAGCCTTTCATCCTTGTTCTGATCCTCCCATCTTCAACTTGCT

mRNA sequence

TGAATCAGAACCCCCGGCAGTTCTCGTCATTCAGGCTTATTTATCTGTGTGCATTTCCGATTGGCCGCTCCGTGTCCGGCGAGAATTCACCGGAGCTTCATAAGCTTCCCAAAACTCAATCAATCGAAAGCGCTAATTTCCTGGAACCTGAAATTCCGAAGAAGAAAGCAAATCGGCGATATGGATTTCTCTGGAGGAAACTGGAGCATGATCCCCAACATCCCTAATCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAACAATTTTCCCTTCAACAACAACAACAACAACAACAACAGCAGCAGCAGCAATCCTTTCACCACCAGCAACAGCAATTCCAGCCCCAAATTCAATCCCAGCAGCAATTTCAGCAGCAACAGCTTTCTCCCCAATTTCAACAGCAACAACCCTCGCCTCAAACCCAGCCCCAGCAACAACCCTCGCCCCAATTCCAGCAACAATTGCAGCCCCAACATTTTCCCCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAATATCATTTTCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAACAGCAACAACAGCAATATCATCAACACCAATCTCTGGCTTCCCATTTTCATCTATTTCATCTAGTGGAGAAATTAGCGGATACTATTGAGAATGGAGCTAGAGATCAGCAATCGGATGCATTGGTTAATGATCTTAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTCGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGGAATTGATTGGCAAGTATAAGAACTCTGTTGAAGAACTTGTCAAGGGCGAGTCTTAGCTACTTCTCACTCATTCGTTATTAGACGTAGCTAGCATCATTTACCTGTTTTGGAAGGAACGCCAAAAGAGCTTTCCACCGAGTCTTGCAATTCCATGAAGGGCCTTTTTCATCTGCCTCCTGCATTTCTTAACATGATGATCATTCACGATTGAATCTTCTCTGCTCTTTGCAACGCTATGGAGCACCAAACTTTCAGGACATTCAGAGTTGATATCACCATCTCTCCTAAATCAATCTGTAAGTAACATCATGTCCTTCCCCTTTTCAACTTCTTTGATTTTCATATCAGTTAAGTAAGTTGTTGAACATTCTATTCAATTTCAATAATACAATCATTTGAGTTTGAATCTGAAGAATCTCGTCTACTCTCCCTAAACCTTCTTGTATTGAGTCCCCTGCTCTTTGAACATATAAACCTTCTTCTTCAACTCAATTCAGCTGAGCCTTTCATCCTTGTTCTGATCCTCCCATCTTCAACTTGCT

Coding sequence (CDS)

ATGGATTTCTCTGGAGGAAACTGGAGCATGATCCCCAACATCCCTAATCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAACAATTTTCCCTTCAACAACAACAACAACAACAACAACAGCAGCAGCAGCAATCCTTTCACCACCAGCAACAGCAATTCCAGCCCCAAATTCAATCCCAGCAGCAATTTCAGCAGCAACAGCTTTCTCCCCAATTTCAACAGCAACAACCCTCGCCTCAAACCCAGCCCCAGCAACAACCCTCGCCCCAATTCCAGCAACAATTGCAGCCCCAACATTTTCCCCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAATATCATTTTCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAACAGCAACAACAGCAATATCATCAACACCAATCTCTGGCTTCCCATTTTCATCTATTTCATCTAGTGGAGAAATTAGCGGATACTATTGAGAATGGAGCTAGAGATCAGCAATCGGATGCATTGGTTAATGATCTTAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTCGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGGAATTGATTGGCAAGTATAAGAACTCTGTTGAAGAACTTGTCAAGGGCGAGTCTTAG

Homology

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BLAST of CmoCh18G012530 vs. Swiss-Prot
Match: MED9_ARATH (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana GN=MED9 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.7e-32
Identity = 143/252 (56.75%), Postives = 161/252 (63.89%), Query Frame = 1


Query: 5   GGNWSMIPNIPNLSNSSNLSNQES-LYLQQQQFSLQQQQQQQQQ---QQQQSFHHQQQQF 64
           GGNWSMIPN+    N    +N +  L+LQQQQ   QQQQQQQQQ   QQQQ    QQQQF
Sbjct: 8   GGNWSMIPNVQAQGNFGTPTNHDQQLFLQQQQLQQQQQQQQQQQFHLQQQQQTQQQQQQF 67

Query: 65  QPQ----IQSQQQFQQQQ---LSPQFQQQQ---PSPQTQPQQQPSPQFQQQLQPQHFPQQ 124
           QPQ    +Q  QQFQQQQ      QFQQQQ    SP  QPQ   SP           P Q
Sbjct: 68  QPQQQQEMQQYQQFQQQQHFIQQQQFQQQQRLLQSPPLQPQSLQSP-----------PPQ 127

Query: 125 QQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENGA 184
           Q      Q   H  QQQQQ  Q   Q  QQ     HQSLASHFHL+ +VEKLAD IENG 
Sbjct: 128 QTMVHTPQSMMHTPQQQQQLVQTPVQTPQQ-----HQSLASHFHLYPMVEKLADVIENGT 187

Query: 185 RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGK 243
           RDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +
Sbjct: 188 RDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLLQQRRDLIVE 243

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BLAST of CmoCh18G012530 vs. TrEMBL
Match: K4B7T4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.7e-37
Identity = 141/240 (58.75%), Postives = 160/240 (66.67%), Query Frame = 1


Query: 3   FSGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQFQP 62
           F GG+W+MIPNI   SN S  SNQ++L+LQQQQF                   QQQ  QP
Sbjct: 4   FGGGSWTMIPNIQTHSNPSTPSNQDNLFLQQQQFQ------------------QQQFIQP 63

Query: 63  QIQSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQQYH 122
           Q+  QQQ QQQQ                QQQ   ++QQQ+Q Q   QQQQ QQQQ QQ  
Sbjct: 64  QLYQQQQQQQQQ----------------QQQ---RYQQQMQQQQMQQQQQMQQQQMQQQ- 123

Query: 123 FQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENGARDQQSDALVNDL 182
            QQQQQQ QQQQQQQQQQQQ   HQSLASHFHL  LVE LADTIENG RDQ SDALV +L
Sbjct: 124 -QQQQQQMQQQQQQQQQQQQQQHHQSLASHFHLLQLVENLADTIENGNRDQHSDALVTEL 183

Query: 183 NNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 242
            N FEKCQQLL SISGS+SS++MTVEGQK+K  E EQ+LN RR+LI +YK SVEE++  E
Sbjct: 184 KNQFEKCQQLLTSISGSISSRSMTVEGQKRKKAECEQMLNQRRDLISRYKGSVEEIINSE 204

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BLAST of CmoCh18G012530 vs. TrEMBL
Match: B9MWT2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s04510g PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.2e-34
Identity = 129/238 (54.20%), Postives = 145/238 (60.92%), Query Frame = 1


Query: 5   GGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQFQPQI 64
           GG+W++IP++P  S S   SNQ+  YL  QQ    QQ Q  Q QQQQ F+ QQQQFQ   
Sbjct: 8   GGSWTVIPSVPTHSGSPAHSNQDQFYLSPQQ----QQPQFTQFQQQQQFNQQQQQFQ--- 67

Query: 65  QSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQQYHFQ 124
             QQQ+Q                           QQQ Q Q F                 
Sbjct: 68  -QQQQYQ---------------------------QQQSQQQRF----------------- 127

Query: 125 QQQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENGARDQQSDALVNDLNN 184
                QQQQQQQ Q QQQ H HQSLASHFHL  L E LAD IENG RDQ SDALVN+LN 
Sbjct: 128 ----IQQQQQQQPQVQQQNHHHQSLASHFHLLQLAENLADAIENGTRDQHSDALVNELNT 187

Query: 185 HFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 243
           HF+KCQQLLNSIS S+++KAMTVEGQK+KLEE EQLLN RRELIGKY+NSVEEL+K E
Sbjct: 188 HFDKCQQLLNSISSSINAKAMTVEGQKRKLEESEQLLNQRRELIGKYRNSVEELLKSE 189

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BLAST of CmoCh18G012530 vs. TrEMBL
Match: A5B4B2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02270 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.2e-33
Identity = 98/132 (74.24%), Postives = 111/132 (84.09%), Query Frame = 1


Query: 111 QQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENGA 170
           QQQQ QQ   Y  QQQ+   QQQQQQQQQQQQ+H HQSLASHFHL HLVE L+D IENG 
Sbjct: 34  QQQQPQQHHLYQHQQQRLHHQQQQQQQQQQQQHHHHQSLASHFHLLHLVENLSDAIENGT 93

Query: 171 RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGK 230
           RDQ SDALV +LN+HFEKCQQLLNSIS S+++KAMTVEGQK+KLEE EQLLN RR+LI K
Sbjct: 94  RDQHSDALVRELNSHFEKCQQLLNSISVSINTKAMTVEGQKRKLEESEQLLNQRRDLIAK 153

Query: 231 YKNSVEELVKGE 243
           Y+NSVE+L+K E
Sbjct: 154 YRNSVEDLIKSE 165

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BLAST of CmoCh18G012530 vs. TrEMBL
Match: A0A0D2QFR4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G141600 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-32
Identity = 106/149 (71.14%), Postives = 119/149 (79.87%), Query Frame = 1


Query: 94  PSPQFQQQLQPQHFPQQQQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQQYHQHQSLASHF 153
           P P  QQQ  PQ F QQQQQ+  Q      QQQQQQQQQQQQ QQ QQQ    QSLASHF
Sbjct: 35  PPPSQQQQFHPQQFQQQQQQRMLQ------QQQQQQQQQQQQVQQNQQQ----QSLASHF 94

Query: 154 HLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKK 213
           HL HLVE LAD I+NG+RDQ SDALVN+LNNHFEKCQQLLNSI+ S++SK+MTVEGQKKK
Sbjct: 95  HLLHLVENLADAIDNGSRDQHSDALVNELNNHFEKCQQLLNSIAASINSKSMTVEGQKKK 154

Query: 214 LEEHEQLLNHRRELIGKYKNSVEELVKGE 243
           LEE EQLLN RR+LI KY++SVE+L+K E
Sbjct: 155 LEESEQLLNQRRDLIAKYRSSVEDLLKTE 173

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BLAST of CmoCh18G012530 vs. TrEMBL
Match: A0A0A0LDE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848270 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-32
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 164 DTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNH 223
           D IENG RDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+H
Sbjct: 11  DAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70

Query: 224 RRELIGKYKNSVEELVKGE 243
           RRELIGKYKNSVEELVKGE
Sbjct: 71  RRELIGKYKNSVEELVKGE 89

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BLAST of CmoCh18G012530 vs. TAIR10
Match: AT1G55080.1 (AT1G55080.1 MED9)

HSP 1 Score: 139.0 bits (349), Expect = 3.8e-33
Identity = 143/252 (56.75%), Postives = 161/252 (63.89%), Query Frame = 1


Query: 5   GGNWSMIPNIPNLSNSSNLSNQES-LYLQQQQFSLQQQQQQQQQ---QQQQSFHHQQQQF 64
           GGNWSMIPN+    N    +N +  L+LQQQQ   QQQQQQQQQ   QQQQ    QQQQF
Sbjct: 8   GGNWSMIPNVQAQGNFGTPTNHDQQLFLQQQQLQQQQQQQQQQQFHLQQQQQTQQQQQQF 67

Query: 65  QPQ----IQSQQQFQQQQ---LSPQFQQQQ---PSPQTQPQQQPSPQFQQQLQPQHFPQQ 124
           QPQ    +Q  QQFQQQQ      QFQQQQ    SP  QPQ   SP           P Q
Sbjct: 68  QPQQQQEMQQYQQFQQQQHFIQQQQFQQQQRLLQSPPLQPQSLQSP-----------PPQ 127

Query: 125 QQQQQQQQQQYHFQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENGA 184
           Q      Q   H  QQQQQ  Q   Q  QQ     HQSLASHFHL+ +VEKLAD IENG 
Sbjct: 128 QTMVHTPQSMMHTPQQQQQLVQTPVQTPQQ-----HQSLASHFHLYPMVEKLADVIENGT 187

Query: 185 RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGK 243
           RDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +
Sbjct: 188 RDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLLQQRRDLIVE 243

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BLAST of CmoCh18G012530 vs. NCBI nr
Match: gi|778686218|ref|XP_011652352.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus])

HSP 1 Score: 327.0 bits (837), Expect = 2.8e-86
Identity = 227/253 (89.72%), Postives = 233/253 (92.09%), Query Frame = 1


Query: 1   MDF-SGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQ--QQQQQQQQQQQQSFHHQQ 60
           MDF  GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSLQ  QQQQQQQQQQQQ+FHHQQ
Sbjct: 1   MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQQQQQQAFHHQQ 60

Query: 61  QQFQPQIQSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFPQQQQQQQQQ 120
           QQFQPQIQ QQQFQQQQLSPQFQQQQPSPQ QPQQQPSPQFQQQLQ QHFPQQQQQQQQQ
Sbjct: 61  QQFQPQIQPQQQFQQQQLSPQFQQQQPSPQIQPQQQPSPQFQQQLQTQHFPQQQQQQQQQ 120

Query: 121 QQQYHFQQQQQQQ--------QQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENG 180
           QQ YHFQQQQQQQ        QQQQQQQQQQQQYHQHQSLASHFHL HLVEKLAD IENG
Sbjct: 121 QQ-YHFQQQQQQQRLLQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENG 180

Query: 181 ARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIG 240
            RDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIG
Sbjct: 181 TRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIG 240

Query: 241 KYKNSVEELVKGE 243
           KYKNSVEELVKGE
Sbjct: 241 KYKNSVEELVKGE 251

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BLAST of CmoCh18G012530 vs. NCBI nr
Match: gi|659093591|ref|XP_008447610.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 1.3e-83
Identity = 222/258 (86.05%), Postives = 227/258 (87.98%), Query Frame = 1


Query: 1   MDF-SGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQ 60
           MDF  GGNWSMIPNIPNL+NSSNLS QES++LQQQQFSLQ QQQQQQQQ   +FHHQQQQ
Sbjct: 1   MDFPGGGNWSMIPNIPNLTNSSNLS-QESIFLQQQQFSLQHQQQQQQQQ---AFHHQQQQ 60

Query: 61  FQPQIQSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQ 120
           FQPQIQ QQQFQQQQLSPQFQ QQPSPQ QPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQ
Sbjct: 61  FQPQIQPQQQFQQQQLSPQFQHQQPSPQIQPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQ 120

Query: 121 QYHFQQQQQQQQQQ---------------QQQQQQQQQYHQHQSLASHFHLFHLVEKLAD 180
           Q   QQQQQQQQQQ               QQQQQQQQQYHQHQSLASHFHL HLVEKLAD
Sbjct: 121 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLAD 180

Query: 181 TIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHR 240
            IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HR
Sbjct: 181 AIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHR 240

Query: 241 RELIGKYKNSVEELVKGE 243
           RELIGKYKNSVEELVKGE
Sbjct: 241 RELIGKYKNSVEELVKGE 254

[Close]

BLAST of CmoCh18G012530 vs. NCBI nr
Match: gi|1009146037|ref|XP_015890664.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Ziziphus jujuba])

HSP 1 Score: 179.5 bits (454), Expect = 7.1e-42
Identity = 141/238 (59.24%), Postives = 153/238 (64.29%), Query Frame = 1


Query: 5   GGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQFQPQI 64
           GG+W+MIPN+   SN+S  SNQ+ LYL   Q         QQQQQQQ F HQ      Q 
Sbjct: 11  GGSWTMIPNVQTHSNTSTPSNQDHLYLHHHQ---------QQQQQQQQFQHQ------QF 70

Query: 65  QSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQQYHFQ 124
           Q QQQFQQQQ     QQQQ               QQQ Q Q    QQQQQQQQQ      
Sbjct: 71  QQQQQFQQQQ-----QQQQ---------------QQQQQQQRLLLQQQQQQQQQ------ 130

Query: 125 QQQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENGARDQQSDALVNDLNN 184
                          QQQ H HQSLASHFHLFH VEKLADTIENG RDQQSDAL+NDLNN
Sbjct: 131 ---------------QQQQHHHQSLASHFHLFHFVEKLADTIENGTRDQQSDALINDLNN 190

Query: 185 HFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 243
           HFEKCQQLLNSISGS+S+KAMTV+GQK+KLEE EQLL  RR+LI KY+ SVEELVK E
Sbjct: 191 HFEKCQQLLNSISGSISTKAMTVDGQKRKLEESEQLLTQRRDLISKYRKSVEELVKSE 192

[Close]

BLAST of CmoCh18G012530 vs. NCBI nr
Match: gi|645244112|ref|XP_008228289.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Prunus mume])

HSP 1 Score: 163.3 bits (412), Expect = 5.3e-37
Identity = 134/238 (56.30%), Postives = 154/238 (64.71%), Query Frame = 1


Query: 5   GGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQFQPQI 64
           GG+W+MIP++P  SN S  S+Q+ +YL                      HHQQQQ   Q 
Sbjct: 12  GGSWNMIPSVPTHSNPSTPSSQDHMYL----------------------HHQQQQ---QQ 71

Query: 65  QSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQQYHFQ 124
           Q QQQFQQQ                         QQ+L      QQQQQQQQQQQQ   Q
Sbjct: 72  QQQQQFQQQ-------------------------QQRL----LLQQQQQQQQQQQQ---Q 131

Query: 125 QQQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENGARDQQSDALVNDLNN 184
           QQQQQQQQQ            HQSLASHFH+FHLVEKLADTIENG RDQQS++L++DLNN
Sbjct: 132 QQQQQQQQQ-----------HHQSLASHFHIFHLVEKLADTIENGTRDQQSESLISDLNN 181

Query: 185 HFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 243
           HFEKCQQLLNSISGS+S+KAMTVEGQK+KLEE EQLLN RR+LI KY+NSVE+L+K E
Sbjct: 192 HFEKCQQLLNSISGSISTKAMTVEGQKRKLEESEQLLNQRRDLITKYRNSVEDLLKSE 181

[Close]

BLAST of CmoCh18G012530 vs. NCBI nr
Match: gi|460374792|ref|XP_004233193.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycopersicum])

HSP 1 Score: 163.3 bits (412), Expect = 5.3e-37
Identity = 141/240 (58.75%), Postives = 160/240 (66.67%), Query Frame = 1


Query: 3   FSGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQSFHHQQQQFQP 62
           F GG+W+MIPNI   SN S  SNQ++L+LQQQQF                   QQQ  QP
Sbjct: 4   FGGGSWTMIPNIQTHSNPSTPSNQDNLFLQQQQFQ------------------QQQFIQP 63

Query: 63  QIQSQQQFQQQQLSPQFQQQQPSPQTQPQQQPSPQFQQQLQPQHFPQQQQQQQQQQQQYH 122
           Q+  QQQ QQQQ                QQQ   ++QQQ+Q Q   QQQQ QQQQ QQ  
Sbjct: 64  QLYQQQQQQQQQ----------------QQQ---RYQQQMQQQQMQQQQQMQQQQMQQQ- 123

Query: 123 FQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENGARDQQSDALVNDL 182
            QQQQQQ QQQQQQQQQQQQ   HQSLASHFHL  LVE LADTIENG RDQ SDALV +L
Sbjct: 124 -QQQQQQMQQQQQQQQQQQQQQHHQSLASHFHLLQLVENLADTIENGNRDQHSDALVTEL 183

Query: 183 NNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 242
            N FEKCQQLL SISGS+SS++MTVEGQK+K  E EQ+LN RR+LI +YK SVEE++  E
Sbjct: 184 KNQFEKCQQLLTSISGSISSRSMTVEGQKRKKAECEQMLNQRRDLISRYKGSVEEIINSE 204

The following BLAST results are available for this feature:

BLAST of CmoCh18G012530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED9_ARATH	6.7e-32	56.75	Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmoCh18G012530 vs. TrEMBL


Match Name	E-value	Identity	Description
K4B7T4_SOLLC	3.7e-37	58.75	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
B9MWT2_POPTR	2.2e-34	54.20	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s04510g PE=4 SV=1	[more]
A5B4B2_VITVI	3.2e-33	74.24	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02270 PE=4 SV=...	[more]
A0A0D2QFR4_GOSRA	1.6e-32	71.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G141600 PE=4 SV=1	[more]
A0A0A0LDE7_CUCSA	2.7e-32	94.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848270 PE=4 SV=1	[more]

BLAST of CmoCh18G012530 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55080.1	3.8e-33	56.75	MED9	[more]

BLAST of CmoCh18G012530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778686218\|ref\|XP_011652352.1\|	2.8e-86	89.72	PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Cucumis sativu...	[more]
gi\|659093591\|ref\|XP_008447610.1\|	1.3e-83	86.05	PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Cucumis melo]	[more]
gi\|1009146037\|ref\|XP_015890664.1\|	7.1e-42	59.24	PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Ziziphus jujub...	[more]
gi\|645244112\|ref\|XP_008228289.1\|	5.3e-37	56.30	PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Prunus mume]	[more]
gi\|460374792\|ref\|XP_004233193.1\|	5.3e-37	58.75	PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycope...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G012530.1	CmoCh18G012530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 31..51 scor
None	No IPR available	PANTHER	PTHR37188	FAMILY NOT NAMED	coord: 57..243 score: 1.3
None	No IPR available	PANTHER	PTHR37188:SF1	SUBFAMILY NOT NAMED	coord: 57..243 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G012530	CmaCh18G012300	Cucurbita maxima (Rimu)	cmacmoB406
CmoCh18G012530	Carg22082	Silver-seed gourd	carcmoB1003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G012530	Watermelon (97103) v1	cmowmB366
CmoCh18G012530	Cucurbita pepo (Zucchini)	cmocpeB376
CmoCh18G012530	Cucurbita pepo (Zucchini)	cmocpeB386
CmoCh18G012530	Cucurbita pepo (Zucchini)	cmocpeB414
CmoCh18G012530	Bottle gourd (USVL1VR-Ls)	cmolsiB353
CmoCh18G012530	Bottle gourd (USVL1VR-Ls)	cmolsiB372
CmoCh18G012530	Cucumber (Gy14) v2	cgybcmoB324
CmoCh18G012530	Cucumber (Gy14) v2	cgybcmoB606
CmoCh18G012530	Melon (DHL92) v3.6.1	cmomedB392
CmoCh18G012530	Melon (DHL92) v3.6.1	cmomedB421
CmoCh18G012530	Silver-seed gourd	carcmoB0968
CmoCh18G012530	Silver-seed gourd	carcmoB1176
CmoCh18G012530	Silver-seed gourd	carcmoB1234
CmoCh18G012530	Silver-seed gourd	carcmoB1253
CmoCh18G012530	Cucumber (Chinese Long) v3	cmocucB0476
CmoCh18G012530	Cucumber (Chinese Long) v3	cmocucB0491
CmoCh18G012530	Watermelon (97103) v2	cmowmbB387
CmoCh18G012530	Watermelon (97103) v2	cmowmbB404
CmoCh18G012530	Wax gourd	cmowgoB0500
CmoCh18G012530	Wax gourd	cmowgoB0506
CmoCh18G012530	Cucurbita moschata (Rifu)	cmocmoB242
CmoCh18G012530	Cucurbita moschata (Rifu)	cmocmoB275
CmoCh18G012530	Cucurbita moschata (Rifu)	cmocmoB333
CmoCh18G012530	Cucumber (Gy14) v1	cgycmoB0709
CmoCh18G012530	Cucurbita maxima (Rimu)	cmacmoB327
CmoCh18G012530	Cucurbita maxima (Rimu)	cmacmoB591
CmoCh18G012530	Wild cucumber (PI 183967)	cmocpiB401
CmoCh18G012530	Wild cucumber (PI 183967)	cmocpiB416
CmoCh18G012530	Cucumber (Chinese Long) v2	cmocuB398
CmoCh18G012530	Cucumber (Chinese Long) v2	cmocuB411
CmoCh18G012530	Melon (DHL92) v3.5.1	cmomeB343
CmoCh18G012530	Melon (DHL92) v3.5.1	cmomeB368
CmoCh18G012530	Watermelon (Charleston Gray)	cmowcgB348
CmoCh18G012530	Watermelon (Charleston Gray)	cmowcgB359