Carg22082 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22082
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mediator of RNA polymerase II transcription subunit 9
Location	Cucurbita_argyrosperma_scaffold_229 : 39145 .. 42110 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCTCTGGAGGAAACTGGAGCATGATCCCCAACATCCCTAATCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAACAATTTTCCCTTCAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAATCCTTTCACCACCAGCAACAGCAATTCCAGCCCCAAATTCAATCCCAGCAGCAATTTCAGCAGCAACAGCTTTCTCCCCAATTTCAACAGCAACAACCCTCGCCTCAAATCCAGCCCCAGCAACAACCCTCGCCCCAATTCCAGCAGCAATTGCAGCCCCAACATTTTCCCCAGCAGCTGCAGCAGCAACAACAACAGCAATATCATTTTCAGCAGCAGCAGCAACAGCAGCAACAGCAACAACAGCAACAGCAACAACAGCAATATCATCAACACCAATCTCTGGCTTCCCATTTTCATCTATTTCATGTAAATGCGTACAGAAAACCTGAATTTCTAGTTTTCTCTAATGTCTGTGTTTCATGTTTGTTGACATTTTTGGATGCTTCGTGTGCTGTAGCTAGTGGAGAAATTAGCGGATACTATTGAGAATGGAGCTAGAGATCAGCAATCGGATGCATTGGTATAAATGTTGATTGTTTTTCAAAATTTCCTTGAAGATTGATTGTAACGTTGTTTGCACCAATAATTTGTGCTTGTAACGTTTTGGAAGCTTAATGATCTTAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGGTATGTTGGAACTCTATTTTGCTTTTAAATGTATGCGCTGGCTGAAGTCTACTCTGTTTAACTGTGTTCTTCATGTGCTTGGCATAACAAATCCATCGCTGCTAACGAGACATACCACAATTGTTTGAAGTATAAATGTTCATGTTTTGAAACTTTTGTTTTATTAGTGTCTAAATGTTGGTTTAGGGCTTTTAGTCTTTCTTTTTTTATTTTTGCATTGGTGAACTTTCTTATGTGAGTTGGGAGTGATTTTACTCCTTTTTTTCATTAGAGGGGATGGAGAAAGTGGACTAAACAATCTTGCATTTCTCAGTCAAGCAGGCAAGTTCCGTTTTGTCTACATTTCTCATCAAACAAATATGGAAAAATAATCACATTGTCAACGTTCCTAACGTAACCAAGCCCTTCCACCATAGAGTCATTGTATTGTAAGTAATCCGAACCTATCCGGAGCAAGCCTGCCATATAGGCAAGTGAAGTTGGTAAACCGTTTGATGCGCAACAATCTCCTACAGTATGTTTCCTCCTAAAAATGTCTAATTGTTAGTGATGATGGTTTCAAAGACCAAAGGTTTTAGTAGGAAGTAGTACAGTTCTTGTATGCAAAGAAACGAAATAGGATATAATCTGTAGCCCGTTAACTCTTTACAATATCATGCGCACACCATTGAACTATGGACTGCTTTTGTATAGGCTCAACAGGCCTCTAAGAAATGTCCTATTTCCCTCTTCTTGTGCGACATTTATATACATGTATGCGTGTGTGTATATATGCGCCTACACACACACACACGCATTATTGTTTTGTATGTGGTTAATGATGCGTTTTCTTGTAAAGAAAAATAAAAAATAAAAGGATGTTTATTTTTTTGGTTGCAGACAGTCGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGTATGGTGGTAGCAATTTTCTGCCTGTGGTTTGCATTAATTTGTCGTTTCCATCAAGGATACTGTTAATGATTCTCTATTATAATAGGGAACTGATTGGCAAGTATAAGAACTCTGTTGAAGAACTTGTCAAGGGCGAGTCTTAGCTACTTCTCACTCATTCGTTATTAGGTAATACTTTAACTTACTTCTCACTCATTCTCACTCATTCGTTATGGAAGAGCATAATGGGTTTTACAGTCTGATGTCGATTCTGTGCTATAAATTCTTGTTCCCTTTCAATGTAAACCCACCACTAGCAAATATTGTCCGCTTTGACTCGATACGTATTGTTGTCAGCCTCACGGTTTTAAAACGCGTCTGTTAGAGAGAGGTTTCCATACCCTTATAAGGAATGCTTCATTCTCCTCTCCAATTGATCGTGAGATCTCACATTTTTGGTCAAAAAGAGGGTCCAAAGTTGCATACTATTGAACACCCAAGATTGTCTGTATTGATCAATTATTCGTAATTCTCGAATTTTGAAGGCGTTACTTGTAATTGCTGCACTAATAGCTCACTCTTTGTCAAAAGATTTTCGTTTCTTAGATAACATCTCAAAGAAAAGAAAAGGTTGCATTTCTAAGAGAGCTTTTCCCTGATAAATGAATCTGGCTTTTATATGGTTGGAGATGACTTCTGGTTTTGAAAATCTCCTATGAATTCAACGCCATGTGTGCTTAGAGATTCAATTATGGATCAGTCTCATTTTTACTGATACTCGCCTTTACAATATGCTTCACCATTTCAGGCGTAGCTAGCATCATTTACCTGTTTTGGAAGGAACGCCAAAAGAGCTTTCCACCGAGTCTTGCAATTCCATGAAGGGCCTTTTTCATCTGCCTCCTGCATTTCTTAACATGATGATCATTCACGATTGAATCTTCTCTGCTCTTTGCAACGCTATGGAGCACCAAACTTTCAGGACATTCAGAGTTGATATCACCATCTCTCCTAAATCAATCTGTAAGTAACATCATGTCCTTCCCCTTTTCAACTTCTTTTATTTTCATATCAGTTAAGTAAGTTGTTGTTGAACATTCTATTCAATTTCAATAATACATTCATTTGAGTTTGAATCTGAAGAATTTCGTCTACTCTCCCTAAACCTTCTTGTATTGAGTCCCCTGCTCTTTGAACATATAAACCTTCTTCTTCAACTCAATTCAGCTGAGCCTTTCATCCTTGTTCTGATCCTCC

mRNA sequence

ATGGATTTCTCTGGAGGAAACTGGAGCATGATCCCCAACATCCCTAATCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAACAATTTTCCCTTCAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAATCCTTTCACCACCAGCAACAGCAATTCCAGCCCCAAATTCAATCCCAGCAGCAATTTCAGCAGCAACAGCTTTCTCCCCAATTTCAACAGCAACAACCCTCGCCTCAAATCCAGCCCCAGCAACAACCCTCGCCCCAATTCCAGCAGCAATTGCAGCCCCAACATTTTCCCCAGCAGCTGCAGCAGCAACAACAACAGCAATATCATTTTCAGCAGCAGCAGCAACAGCAGCAACAGCAACAACAGCAACAGCAACAACAGCAATATCATCAACACCAATCTCTGGCTTCCCATTTTCATCTATTTCATCTAGTGGAGAAATTAGCGGATACTATTGAGAATGGAGCTAGAGATCAGCAATCGGATGCATTGCTTAATGATCTTAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTCGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGGAACTGATTGGCAAGTATAAGAACTCTGTTGAAGAACTTGTCAAGGGCGAGCGTAGCTAGCATCATTTACCTGTTTTGGAAGGAACGCCAAAAGAGCTTTCCACCGAGTCTTGCAATTCCATGAAGGGCCTTTTTCATCTGCCTCCTGCATTTCTTAACATGATGATCATTCACGATTGAATCTTCTCTGCTCTTTGCAACGCTATGGAGCACCAAACTTTCAGGACATTCAGAGTTGATATCACCATCTCTCCTAAATCAATCTGTAAGTAACATCATGTCCTTCCCCTTTTCAACTTCTTTTATTTTCATATCAGTTAAGTAAGTTGTTGTTGAACATTCTATTCAATTTCAATAATACATTCATTTGAGTTTGAATCTGAAGAATTTCGTCTACTCTCCCTAAACCTTCTTGTATTGAGTCCCCTGCTCTTTGAACATATAAACCTTCTTCTTCAACTCAATTCAGCTGAGCCTTTCATCCTTGTTCTGATCCTCC

Coding sequence (CDS)

ATGGATTTCTCTGGAGGAAACTGGAGCATGATCCCCAACATCCCTAATCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAACAATTTTCCCTTCAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAATCCTTTCACCACCAGCAACAGCAATTCCAGCCCCAAATTCAATCCCAGCAGCAATTTCAGCAGCAACAGCTTTCTCCCCAATTTCAACAGCAACAACCCTCGCCTCAAATCCAGCCCCAGCAACAACCCTCGCCCCAATTCCAGCAGCAATTGCAGCCCCAACATTTTCCCCAGCAGCTGCAGCAGCAACAACAACAGCAATATCATTTTCAGCAGCAGCAGCAACAGCAGCAACAGCAACAACAGCAACAGCAACAACAGCAATATCATCAACACCAATCTCTGGCTTCCCATTTTCATCTATTTCATCTAGTGGAGAAATTAGCGGATACTATTGAGAATGGAGCTAGAGATCAGCAATCGGATGCATTGCTTAATGATCTTAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTCGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGGAACTGATTGGCAAGTATAAGAACTCTGTTGAAGAACTTGTCAAGGGCGAGCGTAGCTAG

Protein sequence

MDFSGGNWSMIPNIPNLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQQQQQSFHHQQQQFQPQIQSQQQFQQQQLSPQFQQQQPSPQIQPQQQPSPQFQQQLQPQHFPQQLQQQQQQQYHFQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGERS

Homology

[Close]

BLAST of Carg22082 vs. NCBI nr
Match: XP_022944890.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHLFHLVEKLADTIENGARDQQSDAL+NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ
Sbjct: 151 SHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 210

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
Sbjct: 211 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 242

[Close]

BLAST of Carg22082 vs. NCBI nr
Match: XP_022968420.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHLFHLVEKLADTIENGARDQQSDAL+NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ
Sbjct: 133 SHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 192

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
Sbjct: 193 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 224

[Close]

BLAST of Carg22082 vs. NCBI nr
Match: XP_023542032.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHLFHLVEKLADTIENGARDQQSDAL+NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ
Sbjct: 153 SHFHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 212

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
Sbjct: 213 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 244

[Close]

BLAST of Carg22082 vs. NCBI nr
Match: XP_022148099.1 (mediator of RNA polymerase II transcription subunit 9 [Momordica charantia])

HSP 1 Score: 173.7 bits (439), Expect = 7.6e-40
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHLFHLVEKLAD IENGARDQQSDAL+NDLNNHFEKCQQLLNSISGSLSSKAMTV+GQ
Sbjct: 146 SHFHLFHLVEKLADAIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVDGQ 205

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           KKKLEEH+QLLNHRRELIGKYKNSVEELVKG+
Sbjct: 206 KKKLEEHKQLLNHRRELIGKYKNSVEELVKGD 237

[Close]

BLAST of Carg22082 vs. NCBI nr
Match: XP_016900408.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 2.9e-39
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHL HLVEKLAD IENG RDQQSDAL+NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ
Sbjct: 166 SHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 225

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           KKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Sbjct: 226 KKKLEEHEQLLSHRRELIGKYKNSVEELVKGE 257

[Close]

BLAST of Carg22082 vs. TAIR10
Match: AT1G55080.1 (MED9)

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-30
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHL+ +VEKLAD IENG RDQ SDAL+N+LN+HF+KCQQLLNSISGSL SK MTV+GQ
Sbjct: 152 SHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQ 211

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           K+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Sbjct: 212 KRNVEESEQLLQQRRDLIVEYRKSIEEIVTME 243

[Close]

BLAST of Carg22082 vs. TAIR10
Match: AT1G29580.1 (unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-08
Identity = 39/89 (43.82%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 152 HLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKK 211
           HL+ LVE L D  E+ ARDQ SDAL  D+                           QK+ 
Sbjct: 27  HLYPLVENLKDVTESRARDQNSDALYVDV---------------------------QKQN 86

Query: 212 LEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           LEE EQLL  R ELI +YK SVEE+VK E
Sbjct: 87  LEESEQLLQQRMELIEEYKKSVEEIVKKE 88

[Close]

BLAST of Carg22082 vs. Swiss-Prot
Match: sp|Q8RWA2|MED9_ARATH (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-29
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHL+ +VEKLAD IENG RDQ SDAL+N+LN+HF+KCQQLLNSISGSL SK MTV+GQ
Sbjct: 152 SHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQ 211

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           K+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Sbjct: 212 KRNVEESEQLLQQRRDLIVEYRKSIEEIVTME 243

[Close]

BLAST of Carg22082 vs. TrEMBL
Match: tr|A0A1S4DWQ6|A0A1S4DWQ6_CUCME (Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis melo OX=3656 GN=LOC103490024 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.9e-39
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHL HLVEKLAD IENG RDQQSDAL+NDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ
Sbjct: 166 SHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 225

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           KKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Sbjct: 226 KKKLEEHEQLLSHRRELIGKYKNSVEELVKGE 257

[Close]

BLAST of Carg22082 vs. TrEMBL
Match: tr|A0A251PVF0|A0A251PVF0_PRUPE (Mediator of RNA polymerase II transcription subunit 9 OS=Prunus persica OX=3760 GN=MED9 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.1e-34
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHLFHLVEKLADTIENG RDQQS++L++DLNNHFEKCQQLLNSISGS+S+KAMTVEGQ
Sbjct: 91  SHFHLFHLVEKLADTIENGTRDQQSESLISDLNNHFEKCQQLLNSISGSISTKAMTVEGQ 150

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           K+KLEE EQLLN RR+LI KY+NSVE+L+K E
Sbjct: 151 KRKLEESEQLLNQRRDLITKYRNSVEDLLKSE 182

[Close]

BLAST of Carg22082 vs. TrEMBL
Match: tr|A0A2P5FED6|A0A2P5FED6_9ROSA (Mediator of RNA polymerase II transcription subunit 9 OS=Trema orientalis OX=63057 GN=MED9 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.3e-32
Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHLFH VEKL + IENG RDQQSDAL+NDLNNHF+KCQQLLNSISGSLS+KAMTVEGQ
Sbjct: 96  SHFHLFHWVEKLGEAIENGNRDQQSDALINDLNNHFDKCQQLLNSISGSLSTKAMTVEGQ 155

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           K+KLEE EQ+LN RR+LI KY  SVEELVK E
Sbjct: 156 KRKLEESEQMLNQRRDLINKYIKSVEELVKSE 187

[Close]

BLAST of Carg22082 vs. TrEMBL
Match: tr|A0A2P6RY44|A0A2P6RY44_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0143361 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.9e-32
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHFHLFHLVEKL+D+IENG RDQQSDAL+ DLNNHF+KCQQLLNSISGS+++KAMTVEGQ
Sbjct: 86  SHFHLFHLVEKLSDSIENGTRDQQSDALVADLNNHFDKCQQLLNSISGSITTKAMTVEGQ 145

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           KKKLEE EQLLN RR+L  KYKNSV +L+K E
Sbjct: 146 KKKLEESEQLLNQRRDLNNKYKNSVVDLLKSE 177

[Close]

BLAST of Carg22082 vs. TrEMBL
Match: tr|A0A2P5BHB3|A0A2P5BHB3_PARAD (Mediator of RNA polymerase II transcription subunit 9 OS=Parasponia andersonii OX=3476 GN=MED9 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 74/92 (80.43%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 149 SHFHLFHLVEKLADTIENGARDQQSDALLNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQ 208
           SHF LFHLVEKL + IENG RDQQSDAL+NDLNNHF+KC+QLLNSISGSLS+KAMTVEGQ
Sbjct: 87  SHFRLFHLVEKLGEAIENGNRDQQSDALINDLNNHFDKCRQLLNSISGSLSTKAMTVEGQ 146

Query: 209 KKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 241
           K+KLEE EQ+LN RR+LI KY  SVEELVK E
Sbjct: 147 KRKLEESEQMLNQRRDLINKYIKSVEELVKSE 178

The following BLAST results are available for this feature:

BLAST of Carg22082 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944890.1	1.4e-41	98.91	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata]	[more]
XP_022968420.1	1.4e-41	98.91	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima]	[more]
XP_023542032.1	1.4e-41	98.91	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp...	[more]
XP_022148099.1	7.6e-40	94.57	mediator of RNA polymerase II transcription subunit 9 [Momordica charantia]	[more]
XP_016900408.1	2.9e-39	94.57	PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucum...	[more]

BLAST of Carg22082 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55080.1	2.3e-30	69.57	MED9	[more]
AT1G29580.1	4.2e-08	43.82	unknown protein	[more]

BLAST of Carg22082 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8RWA2\|MED9_ARATH	4.1e-29	69.57	Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg22082 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DWQ6\|A0A1S4DWQ6_CUCME	1.9e-39	94.57	Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A251PVF0\|A0A251PVF0_PRUPE	4.1e-34	82.61	Mediator of RNA polymerase II transcription subunit 9 OS=Prunus persica OX=3760 ...	[more]
tr\|A0A2P5FED6\|A0A2P5FED6_9ROSA	2.3e-32	81.52	Mediator of RNA polymerase II transcription subunit 9 OS=Trema orientalis OX=630...	[more]
tr\|A0A2P6RY44\|A0A2P6RY44_ROSCH	2.9e-32	80.43	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0143361 PE=4...	[more]
tr\|A0A2P5BHB3\|A0A2P5BHB3_PARAD	1.1e-31	80.43	Mediator of RNA polymerase II transcription subunit 9 OS=Parasponia andersonii O...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **INTERPRO**
Term	Definition
IPR038790	Med9_plant
IPR011425	Med9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22082-RA	Carg22082-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 31..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..110
IPR011425	Mediator of RNA polymerase II transcription subunit 9	PFAM	PF07544	Med9	coord: 163..233 e-value: 3.4E-7 score: 30.1
IPR038790	Mediator of RNA polymerase II transcription subunit 9, plant	PANTHER	PTHR37188	FAMILY NOT NAMED	coord: 3..240

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22082	CmaCh18G012300	Cucurbita maxima (Rimu)	carcmaB1032
Carg22082	CmoCh18G012530	Cucurbita moschata (Rifu)	carcmoB1003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22082	Cucumber (Gy14) v2	carcgybB0733
Carg22082	Cucumber (Gy14) v1	carcgyB0829
Carg22082	Cucurbita maxima (Rimu)	carcmaB1031
Carg22082	Cucurbita moschata (Rifu)	carcmoB1002
Carg22082	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22082	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22082	Wild cucumber (PI 183967)	carcpiB0771
Carg22082	Cucumber (Chinese Long) v2	carcuB0754
Carg22082	Cucumber (Chinese Long) v3	carcucB0774
Carg22082	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22082	Melon (DHL92) v3.5.1	carmeB0732
Carg22082	Melon (DHL92) v3.6.1	carmedB0743
Carg22082	Watermelon (Charleston Gray)	carwcgB0715
Carg22082	Watermelon (97103) v1	carwmB0736
Carg22082	Watermelon (97103) v2	carwmbB0772
Carg22082	Wax gourd	carwgoB0871