CmoCh17G007890 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCAGAAACAAACTAAACCGAGTTCCAAGAAGCTTGGAAGATGAAGTCAGGTGTTGTAATTGGTTTGGTTTTGAGCATAGTTATGGGCACCGGTAGCTCCCAACACTTGGGCATGCCAGACTTGTCGAGTAACCCATATTGCTATGCCTTCTGCGTGTTCCCCTGCTTCACTGGCCCCGTCGAATGTGCATTATGCATAAGAAAATGCATATTATCTGCCCAAGACTCCCCCATGGATATCAATCACTTAAACAATGCTTACTTTTGCAAGCTCGGGTGTGCCACTTCTCGCTGCACTAGGCTCCTCTCGAACGCTCGAACAGGTCAACCTACTCGATCTCTTCAAAATTTTAATTCTATTTGTCATTAATATATGTATGTTTAGGTGTTAAATTTAATGGAGATAAGTTTGCCGGAAGAAGGAAATTCAGTACTTTATTATGTCAAGAATGAAAATCAAATCAAATATCATGCCAAAACAAAGAATCTCGCCTAAGATTATATCTATGATCTGATATCGACATAGATCGTATCAGTGATTTGATATTGAAAAACTAAAACGTAAAAATAACGACTAAATCTTTTCAACATTAGGTAACGTGTACGTGCATGTGTATGTGCTCATGTGTTTAAATATGCTAATAAAATTTTGTTGTGAAAGTGACAGATGGGAAGAAGGTCGAAGGATGTGTTGACTCGTGCTCTCGAACATGCTCCAACGTGAAGAATTAATGAAGGAAGACGAAATTATGTGGAATTAAATGAATAAATAAATAAAATGTCAAATATTGGTGATAATAAACCATTTGACTATGAAGCTAAACCCTAGATTAAGTTAAGGTGTGTATTATTAGTATTATAAGTAAATAAATAAAAAAATAAGAATATCTTATGAGAATATTCCTGAAAATTATATTATGACTGGAT CCCAGAAACAAACTAAACCGAGTTCCAAGAAGCTTGGAAGATGAAGTCAGGTGTTGTAATTGGTTTGGTTTTGAGCATAGTTATGGGCACCGGTAGCTCCCAACACTTGGGCATGCCAGACTTGTCGAGTAACCCATATTGCTATGCCTTCTGCGTGTTCCCCTGCTTCACTGGCCCCGTCGAATGTGCATTATGCATAAGAAAATGCATATTATCTGCCCAAGACTCCCCCATGGATATCAATCACTTAAACAATGCTTACTTTTGCAAGCTCGGGTGTGCCACTTCTCGCTGCACTAGGCTCCTCTCGAACGCTCGAACAGATGGGAAGAAGGTCGAAGGATGTGTTGACTCGTGCTCTCGAACATGCTCCAACGTGAAGAATTAATGAAGGAAGACGAAATTATGTGGAATTAAATGAATAAATAAATAAAATGTCAAATATTGGTGATAATAAACCATTTGACTATGAAGCTAAACCCTAGATTAAGTTAAGGTGTGTATTATTAGTATTATAAGTAAATAAATAAAAAAATAAGAATATCTTATGAGAATATTCCTGAAAATTATATTATGACTGGAT ATGAAGTCAGGTGTTGTAATTGGTTTGGTTTTGAGCATAGTTATGGGCACCGGTAGCTCCCAACACTTGGGCATGCCAGACTTGTCGAGTAACCCATATTGCTATGCCTTCTGCGTGTTCCCCTGCTTCACTGGCCCCGTCGAATGTGCATTATGCATAAGAAAATGCATATTATCTGCCCAAGACTCCCCCATGGATATCAATCACTTAAACAATGCTTACTTTTGCAAGCTCGGGTGTGCCACTTCTCGCTGCACTAGGCTCCTCTCGAACGCTCGAACAGATGGGAAGAAGGTCGAAGGATGTGTTGACTCGTGCTCTCGAACATGCTCCAACGTGAAGAATTAA
BLAST of CmoCh17G007890 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07 Identity = 34/118 (28.81%), Postives = 58/118 (49.15%), Query Frame = 1
BLAST of CmoCh17G007890 vs. TrEMBL
Match: M5XBV6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019184mg PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 8.7e-13 Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1
BLAST of CmoCh17G007890 vs. TrEMBL
Match: F6HX25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04840 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10 Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 1
BLAST of CmoCh17G007890 vs. TrEMBL
Match: M5WW19_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016940mg PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.6e-09 Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 1
BLAST of CmoCh17G007890 vs. TrEMBL
Match: V4ST32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09 Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 1
BLAST of CmoCh17G007890 vs. TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09 Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 1
BLAST of CmoCh17G007890 vs. TAIR10
Match: AT1G12672.2 (AT1G12672.2 unknown protein) HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09 Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 1
BLAST of CmoCh17G007890 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.) HSP 1 Score: 57.0 bits (136), Expect = 8.9e-09 Identity = 34/118 (28.81%), Postives = 58/118 (49.15%), Query Frame = 1
BLAST of CmoCh17G007890 vs. NCBI nr
Match: gi|595974788|ref|XP_007217789.1| (hypothetical protein PRUPE_ppa019184mg [Prunus persica]) HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12 Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1
BLAST of CmoCh17G007890 vs. NCBI nr
Match: gi|225442677|ref|XP_002284798.1| (PREDICTED: thionin-like protein 2 [Vitis vinifera]) HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10 Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 1
BLAST of CmoCh17G007890 vs. NCBI nr
Match: gi|645244844|ref|XP_008228605.1| (PREDICTED: thionin-like protein 2 [Prunus mume]) HSP 1 Score: 71.6 bits (174), Expect = 9.9e-10 Identity = 46/117 (39.32%), Postives = 60/117 (51.28%), Query Frame = 1
BLAST of CmoCh17G007890 vs. NCBI nr
Match: gi|694353623|ref|XP_009358204.1| (PREDICTED: thionin-like protein 2 [Pyrus x bretschneideri]) HSP 1 Score: 71.6 bits (174), Expect = 9.9e-10 Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 1
BLAST of CmoCh17G007890 vs. NCBI nr
Match: gi|657943097|ref|XP_008353739.1| (PREDICTED: thionin-like protein 2 [Malus domestica]) HSP 1 Score: 71.6 bits (174), Expect = 9.9e-10 Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |