CmoCh17G007890 (gene) Cucurbita moschata (Rifu)

NameCmoCh17G007890
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTo encode a PR protein, Belongs to the plant thionin family with the following members:, putative
LocationCmo_Chr17 : 7586798 .. 7587724 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAGAAACAAACTAAACCGAGTTCCAAGAAGCTTGGAAGATGAAGTCAGGTGTTGTAATTGGTTTGGTTTTGAGCATAGTTATGGGCACCGGTAGCTCCCAACACTTGGGCATGCCAGACTTGTCGAGTAACCCATATTGCTATGCCTTCTGCGTGTTCCCCTGCTTCACTGGCCCCGTCGAATGTGCATTATGCATAAGAAAATGCATATTATCTGCCCAAGACTCCCCCATGGATATCAATCACTTAAACAATGCTTACTTTTGCAAGCTCGGGTGTGCCACTTCTCGCTGCACTAGGCTCCTCTCGAACGCTCGAACAGGTCAACCTACTCGATCTCTTCAAAATTTTAATTCTATTTGTCATTAATATATGTATGTTTAGGTGTTAAATTTAATGGAGATAAGTTTGCCGGAAGAAGGAAATTCAGTACTTTATTATGTCAAGAATGAAAATCAAATCAAATATCATGCCAAAACAAAGAATCTCGCCTAAGATTATATCTATGATCTGATATCGACATAGATCGTATCAGTGATTTGATATTGAAAAACTAAAACGTAAAAATAACGACTAAATCTTTTCAACATTAGGTAACGTGTACGTGCATGTGTATGTGCTCATGTGTTTAAATATGCTAATAAAATTTTGTTGTGAAAGTGACAGATGGGAAGAAGGTCGAAGGATGTGTTGACTCGTGCTCTCGAACATGCTCCAACGTGAAGAATTAATGAAGGAAGACGAAATTATGTGGAATTAAATGAATAAATAAATAAAATGTCAAATATTGGTGATAATAAACCATTTGACTATGAAGCTAAACCCTAGATTAAGTTAAGGTGTGTATTATTAGTATTATAAGTAAATAAATAAAAAAATAAGAATATCTTATGAGAATATTCCTGAAAATTATATTATGACTGGAT

mRNA sequence

CCCAGAAACAAACTAAACCGAGTTCCAAGAAGCTTGGAAGATGAAGTCAGGTGTTGTAATTGGTTTGGTTTTGAGCATAGTTATGGGCACCGGTAGCTCCCAACACTTGGGCATGCCAGACTTGTCGAGTAACCCATATTGCTATGCCTTCTGCGTGTTCCCCTGCTTCACTGGCCCCGTCGAATGTGCATTATGCATAAGAAAATGCATATTATCTGCCCAAGACTCCCCCATGGATATCAATCACTTAAACAATGCTTACTTTTGCAAGCTCGGGTGTGCCACTTCTCGCTGCACTAGGCTCCTCTCGAACGCTCGAACAGATGGGAAGAAGGTCGAAGGATGTGTTGACTCGTGCTCTCGAACATGCTCCAACGTGAAGAATTAATGAAGGAAGACGAAATTATGTGGAATTAAATGAATAAATAAATAAAATGTCAAATATTGGTGATAATAAACCATTTGACTATGAAGCTAAACCCTAGATTAAGTTAAGGTGTGTATTATTAGTATTATAAGTAAATAAATAAAAAAATAAGAATATCTTATGAGAATATTCCTGAAAATTATATTATGACTGGAT

Coding sequence (CDS)

ATGAAGTCAGGTGTTGTAATTGGTTTGGTTTTGAGCATAGTTATGGGCACCGGTAGCTCCCAACACTTGGGCATGCCAGACTTGTCGAGTAACCCATATTGCTATGCCTTCTGCGTGTTCCCCTGCTTCACTGGCCCCGTCGAATGTGCATTATGCATAAGAAAATGCATATTATCTGCCCAAGACTCCCCCATGGATATCAATCACTTAAACAATGCTTACTTTTGCAAGCTCGGGTGTGCCACTTCTCGCTGCACTAGGCTCCTCTCGAACGCTCGAACAGATGGGAAGAAGGTCGAAGGATGTGTTGACTCGTGCTCTCGAACATGCTCCAACGTGAAGAATTAA
BLAST of CmoCh17G007890 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 34/118 (28.81%), Postives = 58/118 (49.15%), Query Frame = 1

Query: 1   MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGP-----VECAL-CIR 60
           M   V+I +V+  ++   ++Q +   +      CY  C+  C  G      ++C   C +
Sbjct: 1   MLVAVMIVMVIGNLLAQTAAQKIPFKE------CYPACLVECKAGSKFPKYLKCPFTCTK 60

Query: 61  KCILSAQDSPMDINHLNNA-YFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCS 112
           +C+       +  N+++ + YFCKLGCAT  C  L S    + ++V  CVDSCS  C+
Sbjct: 61  ECLQQPSPPSVSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

BLAST of CmoCh17G007890 vs. TrEMBL
Match: M5XBV6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019184mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.7e-13
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1

Query: 1   MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTG---PVECAL-CIRKC 60
           ++  V++ LVL +VMG  ++Q   +        CY  C   C      P++C + C++KC
Sbjct: 6   VRCAVLVCLVLGLVMGQSTAQLFQL--------CYGACFGICIVNEHNPLKCGIRCLKKC 65

Query: 61  ILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCSNVK 115
           IL+ +  P D +  N+ +FCKLGCATS CT + +    + +KV+ CVDSCS TC+N +
Sbjct: 66  ILTPE--PSDGHQTNSLHFCKLGCATSLCTNISTKDNPNEEKVKNCVDSCSGTCTNAQ 113

BLAST of CmoCh17G007890 vs. TrEMBL
Match: F6HX25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04840 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 1

Query: 5   VVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVECAL-CIRKCILSAQDS 64
           V++GLV+ +++G  ++      D  +   C+ FC+         C+L C++ C++ +   
Sbjct: 10  VMVGLVMGMLVGQSTAS---FKDCYTK--CFIFCIITPNNTAFSCSLECLKDCVIPSH-- 69

Query: 65  PMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCS 112
           P+DI   +  YFCKLGCA+S CT L +     G+KVE CV+SCS  C+
Sbjct: 70  PLDIETADTTYFCKLGCASSLCTNLSTKKNPAGEKVESCVNSCSNKCT 110

BLAST of CmoCh17G007890 vs. TrEMBL
Match: M5WW19_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016940mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-09
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 1

Query: 5   VVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFT---GPVECA-LCIRKCIL-- 64
           V++ LVL +++G  ++        S+   CY  C   CF     P+ C   C+RKCI   
Sbjct: 10  VIVSLVLGLLIGQSTA--------SNFKDCYEVCFATCFPEKKDPIYCGGHCLRKCIFHP 69

Query: 65  SAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCS 112
           S+ D+     H     FCKLGCATS C  + +    +G KVE CVDSCSRTC+
Sbjct: 70  SSLDTQTYPKH-----FCKLGCATSLCNNISTKDNHNGGKVETCVDSCSRTCT 109

BLAST of CmoCh17G007890 vs. TrEMBL
Match: V4ST32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 1

Query: 34  CYAFCVFPCFTGPVE-----CALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRL 93
           CY  C   C+  P        A C++ CI   +   + +   +  YFCKLGCATS CT L
Sbjct: 30  CYETCFIICYITPGTTLGSCAAKCLKDCIFPPKLHTLSLQ--DTEYFCKLGCATSLCTNL 89

Query: 94  LSNARTDGKKVEGCVDSCSRTCS 112
            S     G+KVEGCV+SCS++CS
Sbjct: 90  SSKDNPAGEKVEGCVNSCSKSCS 110

BLAST of CmoCh17G007890 vs. TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 1

Query: 34  CYAFCVFPCFTGPVE-----CALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRL 93
           CY  C   C+  P        A C++ CI   +   + +   +  YFCKLGCATS CT L
Sbjct: 30  CYETCFIICYITPGTTLGSCAAKCLKDCIFPPKLHTLSLQ--DTEYFCKLGCATSLCTNL 89

Query: 94  LSNARTDGKKVEGCVDSCSRTCS 112
            S     G+KVEGCV+SCS++CS
Sbjct: 90  SSKDNPAGEKVEGCVNSCSKSCS 110

BLAST of CmoCh17G007890 vs. TAIR10
Match: AT1G12672.2 (AT1G12672.2 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 1

Query: 46  PVECALCIRKCI---LSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGC 105
           P +   CI+ C+    S  DS  +INH  N Y+CKLGC+T  C  L S    +  KV  C
Sbjct: 35  PFKTFSCIKTCLEPPSSQMDSTNEINH--NDYYCKLGCSTHHCASLSSIQNPNVDKVVDC 94

Query: 106 VDSCSRTCSN 113
           VDSCS  CSN
Sbjct: 95  VDSCSDKCSN 102

BLAST of CmoCh17G007890 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.)

HSP 1 Score: 57.0 bits (136), Expect = 8.9e-09
Identity = 34/118 (28.81%), Postives = 58/118 (49.15%), Query Frame = 1

Query: 1   MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGP-----VECAL-CIR 60
           M   V+I +V+  ++   ++Q +   +      CY  C+  C  G      ++C   C +
Sbjct: 1   MLVAVMIVMVIGNLLAQTAAQKIPFKE------CYPACLVECKAGSKFPKYLKCPFTCTK 60

Query: 61  KCILSAQDSPMDINHLNNA-YFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCS 112
           +C+       +  N+++ + YFCKLGCAT  C  L S    + ++V  CVDSCS  C+
Sbjct: 61  ECLQQPSPPSVSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

BLAST of CmoCh17G007890 vs. NCBI nr
Match: gi|595974788|ref|XP_007217789.1| (hypothetical protein PRUPE_ppa019184mg [Prunus persica])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1

Query: 1   MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTG---PVECAL-CIRKC 60
           ++  V++ LVL +VMG  ++Q   +        CY  C   C      P++C + C++KC
Sbjct: 6   VRCAVLVCLVLGLVMGQSTAQLFQL--------CYGACFGICIVNEHNPLKCGIRCLKKC 65

Query: 61  ILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCSNVK 115
           IL+ +  P D +  N+ +FCKLGCATS CT + +    + +KV+ CVDSCS TC+N +
Sbjct: 66  ILTPE--PSDGHQTNSLHFCKLGCATSLCTNISTKDNPNEEKVKNCVDSCSGTCTNAQ 113

BLAST of CmoCh17G007890 vs. NCBI nr
Match: gi|225442677|ref|XP_002284798.1| (PREDICTED: thionin-like protein 2 [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 1

Query: 5   VVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVECAL-CIRKCILSAQDS 64
           V++GLV+ +++G  ++      D  +   C+ FC+         C+L C++ C++ +   
Sbjct: 10  VMVGLVMGMLVGQSTAS---FKDCYTK--CFIFCIITPNNTAFSCSLECLKDCVIPSH-- 69

Query: 65  PMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCS 112
           P+DI   +  YFCKLGCA+S CT L +     G+KVE CV+SCS  C+
Sbjct: 70  PLDIETADTTYFCKLGCASSLCTNLSTKKNPAGEKVESCVNSCSNKCT 110

BLAST of CmoCh17G007890 vs. NCBI nr
Match: gi|645244844|ref|XP_008228605.1| (PREDICTED: thionin-like protein 2 [Prunus mume])

HSP 1 Score: 71.6 bits (174), Expect = 9.9e-10
Identity = 46/117 (39.32%), Postives = 60/117 (51.28%), Query Frame = 1

Query: 5   VVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFT---GPVECA-LCIRKCIL-- 64
           V++ LVL ++MG  ++        S    CY  C   CF     P+ C   C+RKCI   
Sbjct: 10  VIVSLVLGLLMGQSTA--------SKFKDCYEVCFATCFPEKKDPIYCGGHCLRKCIFHP 69

Query: 65  SAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCSNVKN 116
           S+ D+     H     FCKLGCATS C  + +    +G KVE CVDSCSRTC+   N
Sbjct: 70  SSLDTQTYPKH-----FCKLGCATSLCNNISTKDNHNGGKVETCVDSCSRTCTATYN 113

BLAST of CmoCh17G007890 vs. NCBI nr
Match: gi|694353623|ref|XP_009358204.1| (PREDICTED: thionin-like protein 2 [Pyrus x bretschneideri])

HSP 1 Score: 71.6 bits (174), Expect = 9.9e-10
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 1

Query: 9   LVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVE----CAL-CIRKCILSAQDS 68
           LVL ++M  G S        +S   CY  C   C   P      C+  C++ CI+ ++ S
Sbjct: 14  LVLGMLMLAGQSS-------ASFKSCYESCFILCVITPNHSVSYCSFQCLKDCIIPSR-S 73

Query: 69  PMDIN--HLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCSNVKN 116
           P+D +  H +N YFCKLGCA+S C+ L +    + +KV GCVDSCS TC+ +KN
Sbjct: 74  PLDHSNIHKDNVYFCKLGCASSLCSNLSTKQNPEVEKVGGCVDSCSETCT-IKN 118

BLAST of CmoCh17G007890 vs. NCBI nr
Match: gi|657943097|ref|XP_008353739.1| (PREDICTED: thionin-like protein 2 [Malus domestica])

HSP 1 Score: 71.6 bits (174), Expect = 9.9e-10
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 1

Query: 9   LVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVE----CAL-CIRKCILSAQDS 68
           LVL ++M  G S        +S   CY  C   C   P      C+  C++ CI+ ++ S
Sbjct: 14  LVLGMLMLAGQSS-------ASFKSCYESCFILCVITPNHSVSYCSFQCLKDCIIPSR-S 73

Query: 69  PMDIN--HLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCSNVKN 116
           P D +  H +N YFCKLGCA+S C+ L +    + +KV GCVDSCS+TC+ +KN
Sbjct: 74  PFDHSNIHKDNVYFCKLGCASSLCSNLSTKQNPEVEKVGGCVDSCSKTCT-IKN 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
THNL2_ARATH1.6e-0728.81Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
M5XBV6_PRUPE8.7e-1337.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019184mg PE=4 SV=1[more]
F6HX25_VITVI1.1e-1035.19Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04840 PE=4 SV=... [more]
M5WW19_PRUPE2.6e-0938.94Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016940mg PE=4 SV=1[more]
V4ST32_9ROSI4.5e-0942.17Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026803mg PE=4 SV=1[more]
A0A067E0U5_CITSI4.5e-0942.17Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G12672.21.4e-0945.71 unknown protein[more]
AT1G12663.18.9e-0928.81 Predicted to encode a PR (pathogenesis-related) protein. Belongs to... [more]
Match NameE-valueIdentityDescription
gi|595974788|ref|XP_007217789.1|1.2e-1237.29hypothetical protein PRUPE_ppa019184mg [Prunus persica][more]
gi|225442677|ref|XP_002284798.1|1.5e-1035.19PREDICTED: thionin-like protein 2 [Vitis vinifera][more]
gi|645244844|ref|XP_008228605.1|9.9e-1039.32PREDICTED: thionin-like protein 2 [Prunus mume][more]
gi|694353623|ref|XP_009358204.1|9.9e-1039.47PREDICTED: thionin-like protein 2 [Pyrus x bretschneideri][more]
gi|657943097|ref|XP_008353739.1|9.9e-1039.47PREDICTED: thionin-like protein 2 [Malus domestica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G007890.1CmoCh17G007890.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G007890MELO3C023361Melon (DHL92) v3.5.1cmomeB318
CmoCh17G007890Lsi02G027730Bottle gourd (USVL1VR-Ls)cmolsiB337
CmoCh17G007890CsaV3_7G033080Cucumber (Chinese Long) v3cmocucB0455
The following gene(s) are paralogous to this gene:

None