CmoCh17G005570 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G005570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Splicing factor U2af large subunit B
Location	Cmo_Chr17 : 5740351 .. 5744122 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGACTACTTGCCCCTCTGTGCTGACCATGGGCGTGAGCTGACATCTGTAGCTTTTATGTGCAAGAAGGACCAATGCACCGGTTAGATGGATCTTGTTCGTCCTCATCTGGAAACTTTTTCCTTTTTGGGTAGTCTTACAAATATTTCTCAGAATTTGTACATGCATTAAATTTGTATGCTAAAAAATTTATTGGAAGAGGCTAAGTTACATCACATTGAGTTTCCTGAAGCATGAAGTAGGTTCAGGTGAACTTGAATCTTATGTGTATGCGAATGTTGTTGACTTGAATTGTGATTATTTTCTTTGATTTAGCCTAATTTCTTTAGCAGGTCAGATTCCCGGGACAACTCCAGCAATTCCTGGAATGTTTCCTACCATGTTTCCTCTGGCAACGGGTCAGGTAACTCTACTTCTCCCATATTAAAAACAATGGAATAATACAAAATCTTTAGACAAATGACATTAATTATTTGATAGAAGTATATATTCATCATTTACATTGTTTTTCCTTTTATTTGTTTTCATGCAGCCCTTTGGAGCACTTCCTGTAATGCCGGTTCAGGCAATGACTCAACAGGTATCAATTCAGTGCTGTTGTACGTTTCTGTTTTTGGTTGTACACATTAAGTTGGGCATTAAAACTTATGGTGCGTGTTCTGTTTTTAGGCTACTAGACATGCACGGCGCGTTTATGTGGGAGGGCTACCACCAACAGCCAACGAACAGGTTTTTTGCACTTCTTGTTGCTCTTTTTTTATTGACATTTTATTATATTATTTAATATTCAAAGTCCGTATCTTCATATATATTCTTGTCTGGAGTTCACCATTTGTGCATCCGATTGCAGATTTTTAGCTTATTTATTTTGTTAAGGTTTTGGTTTCTTGTAATTTTTTGATTCTGCAATGCCAAATGCAAATGTCATCCTCTGTTGACTTACCAAATAAAAGTTTGAAAAACTTATCATTCTTGGCTATGTTTATTCCTCTCCCTTTCTCACGACCAGTGCCGATAACCTTGGCATACTTTTCCTTCTTCATTTTCCATGTTTTTTTTTCCTCTAGTTGGCCAGGCCATACTGGAAACTTTTCTCATATAACAGCCAACTGCATTTATTCACAAAGGTCATTTGTTGTTTGCAGTCTGTTGCCACATTTTTCAGCCAGGTCATGGCAGCAATAGGAGGAAATACCGCTGGCCCTGGTATGGTGATTTTTTATTTCTGTTCATAGGTTTAACTGTCTGGATTGTTTGCCAAATCAACTTGTTTTAACTCATACGTTGGCCGTCTATCACTTATAGGAGATGCGGTTGTTAATGTTTACATAAATCATGAGAAAAAGTTTGCTTTTGTTGAGATGAGATCTGTTGAGGAAGCCAGTAATGCAATGGCCTTGGATGGGATCATCTTTGAGGTACTTAGTTTGTCATTGACTATTTTATATGCATAAAATGTTTGAACAAAATTTATTGTGGAAAATATTTTTCTTATCTGTTACTATTGTTCAAATTAGGGAGCGCCTGTTAAGGTGCGAAGACCTAGTGATTACAATCCTTCTCTTGCTGCAACGCTTGGTCCCAGCCAGCCAAGCCCCAATCTGAACCTAGCTGCTGTTGGTCTAACTCCAGGTTCAGCTGGTGGTCTTGAGGGTCCAGACCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAGCTCAGGTCCGAGAGTTGCTGGAGTCTTTTGGGCCCCTACGAGGTTTTGATCTGGTGAAAGATAGAGAGACGGGAAATTCAAAAGGCTATGCATTTTGTGTTTACCAAGATCTTTCAGTCACTGACATAGCCTGTGCGGCCCTCAACGGTATTAAAATGGGAGATAAGACGCTCACTGTTCGGCGTGCAAATCAAGGAACCAACCAACCCAAACCAGAGCAAGAAAGTGTTCTGTTACATGCACAGCAGCAAATTGCGTTGCAGGTTAGTGAAGTTACAGGCTTTTCCTCTACTTTGTGGAATTTTAAATGAATGGCTCATGTACTTCTCCTACCTAATAACTTTAAAATACCCAAACATCATTGAAATTATCTTTATATATTATATTAGTCTTTATGTTTCAACTGAATAACATGGGGGAAGATTGCTAGTTGATATTTCAAGTTGATTCTTTCATTGAACTTTTGATTCTACCAGCATTGCAGTTGAGTTCTCGGGAGTTACCTGACGGACCGAAAATTCCCAGATTCGTTTAAACTTGTAATTTATTGTAAAATGCATAGAATACCCTAAAAAATGACAAAATGTCTTGTAGTGGTGAATAGTATGCATTTTGTTTCTTTCTCTGGCATGAATTGCGAGTGTGCTTGATAATGTGAAGCATGAATGATTCATTGAGAACAAGACCTGAAATTTGTAGTATACTTGGTTGCTAATATGTTGTGTATATAATATCAAGATCAACAGAAGTAGCTCCCAAGTTTGTTGTATATAACATGGCAATTTTTATAATTGTGAAATATTATCTTAGTTTATCACTATCTTACCGTATTCCTTTTTCAGAAGCTTATGCTACAGCCTGGGGCTGTATCCACCAAGGTTCTTTGTCTTACACAAGTTGTTACCCCGGAAGAGCTTATTAATGATGAAGACTACGAAGATATCATGGAAGACATGCGAGGGGAAGGCGGAAAATTTGGTAAACGAACACATTTTTTGGTTGTGTACCTATCAACATAGATTCTATAGGACTTCAAAGCTTCATGCATACTCATTTATTTCTTGTTTGTTTTTTCTGTGTGATACCTCTGTTTTACAGCCTTTTCTTGTCCTCACATTCTGGTAGAAAGAATTAGACAAATAACTTACAGACAGAAGCCTCCATAGCCCCTTCTATCTTTATACACCCACCCGACATATGCTTCTTATCTGATTCTGAATTTTTTTTTGGTTTCAAGTGGTTCTTATTGTGTCTTTGCAGGTGCATTAGTAAACGTTGTAATCCCGCGTCCGAGACCCAATGAAGCAGCACCTGGAGTTGGAAAGGCATGAATTTCTGCATCTTTCAACCAAAATTTTCAATTCTTTTTCCTTCCTGCAAACCTGAATTTTGATTTGATACCCAAAAACAGTCATCTTATGATATTAGGAACAATGAGATTATAGAAAGTGAAGATGTGATTAACTCAGTAACCTCTTCCATTCACTCATATTTCCTGTTTCATTCGTTTTATCTGGTAACAGAAGAGTTTGTAAACAACAAGGAAGCATCTTTCTTGGTTGAGTCCTCTTCTAAGTTAATTTGGAAGTCTAACTAATACTTTCTTGCTTTTGTTTTTTGCATACCAGGTGTTTTTAGAGTACGCAGACATCGAGAGCGCAACGAAAGCTCGATCTGGTTTGAATGGAAGAAAATTTGGAGGGAACCAAGTGATAGCTGTATTCTATCCAGAGAACAAGTTTGCCCAAGGGGAGTATGATGCCTAAACTTCACTTTTTACTTACAAACACAGTTATTGGTAAAAAAAAAAAAAGAAAATATTTACCTTTGTTCTAAATGTGGTAAGGTAAGGTAAGGTAAGTTTGTGAACAGGCAAGTAAGTAAAGGTAGCGTCTAGATTTTAGATAGTTACTGTCTCTGTCATTTTAAATAGTGTAATGGATGGATAGCCTCATCTCAACCTTCTTCTTTATTACTATACTTTTAATAGACTTTCTTGAATCTTGTGTGTACTATTGTTTTGTTCAGTTGTTTCTTCCCTTTTGGTGTATGCTATTATTTTGTTCAA

mRNA sequence

ATGTTGGACTACTTGCCCCTCTGTGCTGACCATGGGCGTGAGCTGACATCTGTAGCTTTTATGTGCAAGAAGGACCAATGCACCGGTCAGATTCCCGGGACAACTCCAGCAATTCCTGGAATGTTTCCTACCATGTTTCCTCTGGCAACGGGTCAGCCCTTTGGAGCACTTCCTGTAATGCCGGTTCAGGCAATGACTCAACAGGCTACTAGACATGCACGGCGCGTTTATGTGGGAGGGCTACCACCAACAGCCAACGAACAGTCTGTTGCCACATTTTTCAGCCAGGTCATGGCAGCAATAGGAGGAAATACCGCTGGCCCTGGAGATGCGGTTGTTAATGTTTACATAAATCATGAGAAAAAGTTTGCTTTTGTTGAGATGAGATCTGTTGAGGAAGCCAGTAATGCAATGGCCTTGGATGGGATCATCTTTGAGGGAGCGCCTGTTAAGGTGCGAAGACCTAGTGATTACAATCCTTCTCTTGCTGCAACGCTTGGTCCCAGCCAGCCAAGCCCCAATCTGAACCTAGCTGCTGTTGGTCTAACTCCAGGTTCAGCTGGTGGTCTTGAGGGTCCAGACCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAGCTCAGGTCCGAGAGTTGCTGGAGTCTTTTGGGCCCCTACGAGGTTTTGATCTGGTGAAAGATAGAGAGACGGGAAATTCAAAAGGCTATGCATTTTGTGTTTACCAAGATCTTTCAGTCACTGACATAGCCTGTGCGGCCCTCAACGGTATTAAAATGGGAGATAAGACGCTCACTGTTCGGCGTGCAAATCAAGGAACCAACCAACCCAAACCAGAGCAAGAAAGTGTTCTGTTACATGCACAGCAGCAAATTGCGTTGCAGAAGCTTATGCTACAGCCTGGGGCTGTATCCACCAAGGTTCTTTGTCTTACACAAGTTGTTACCCCGGAAGAGCTTATTAATGATGAAGACTACGAAGATATCATGGAAGACATGCGAGGGGAAGGCGGAAAATTTGGTGCATTAGTAAACGTTGTAATCCCGCGTCCGAGACCCAATGAAGCAGCACCTGGAGTTGGAAAGGTGTTTTTAGAGTACGCAGACATCGAGAGCGCAACGAAAGCTCGATCTGGTTTGAATGGAAGAAAATTTGGAGGGAACCAAGTGATAGCTGTATTCTATCCAGAGAACAAGTTTGCCCAAGGGGAGTATGATGCCTAAACTTCACTTTTTACTTACAAACACAGTTATTGGTAAAAAAAAAAAAAGAAAATATTTACCTTTGTTCTAAATGTGGTAAGGTAAGGTAAGGTAAGTTTGTGAACAGGCAAGTAAGTAAAGGTAGCGTCTAGATTTTAGATAGTTACTGTCTCTGTCATTTTAAATAGTGTAATGGATGGATAGCCTCATCTCAACCTTCTTCTTTATTACTATACTTTTAATAGACTTTCTTGAATCTTGTGTGTACTATTGTTTTGTTCAGTTGTTTCTTCCCTTTTGGTGTATGCTATTATTTTGTTCAA

Coding sequence (CDS)

ATGTTGGACTACTTGCCCCTCTGTGCTGACCATGGGCGTGAGCTGACATCTGTAGCTTTTATGTGCAAGAAGGACCAATGCACCGGTCAGATTCCCGGGACAACTCCAGCAATTCCTGGAATGTTTCCTACCATGTTTCCTCTGGCAACGGGTCAGCCCTTTGGAGCACTTCCTGTAATGCCGGTTCAGGCAATGACTCAACAGGCTACTAGACATGCACGGCGCGTTTATGTGGGAGGGCTACCACCAACAGCCAACGAACAGTCTGTTGCCACATTTTTCAGCCAGGTCATGGCAGCAATAGGAGGAAATACCGCTGGCCCTGGAGATGCGGTTGTTAATGTTTACATAAATCATGAGAAAAAGTTTGCTTTTGTTGAGATGAGATCTGTTGAGGAAGCCAGTAATGCAATGGCCTTGGATGGGATCATCTTTGAGGGAGCGCCTGTTAAGGTGCGAAGACCTAGTGATTACAATCCTTCTCTTGCTGCAACGCTTGGTCCCAGCCAGCCAAGCCCCAATCTGAACCTAGCTGCTGTTGGTCTAACTCCAGGTTCAGCTGGTGGTCTTGAGGGTCCAGACCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAGCTCAGGTCCGAGAGTTGCTGGAGTCTTTTGGGCCCCTACGAGGTTTTGATCTGGTGAAAGATAGAGAGACGGGAAATTCAAAAGGCTATGCATTTTGTGTTTACCAAGATCTTTCAGTCACTGACATAGCCTGTGCGGCCCTCAACGGTATTAAAATGGGAGATAAGACGCTCACTGTTCGGCGTGCAAATCAAGGAACCAACCAACCCAAACCAGAGCAAGAAAGTGTTCTGTTACATGCACAGCAGCAAATTGCGTTGCAGAAGCTTATGCTACAGCCTGGGGCTGTATCCACCAAGGTTCTTTGTCTTACACAAGTTGTTACCCCGGAAGAGCTTATTAATGATGAAGACTACGAAGATATCATGGAAGACATGCGAGGGGAAGGCGGAAAATTTGGTGCATTAGTAAACGTTGTAATCCCGCGTCCGAGACCCAATGAAGCAGCACCTGGAGTTGGAAAGGTGTTTTTAGAGTACGCAGACATCGAGAGCGCAACGAAAGCTCGATCTGGTTTGAATGGAAGAAAATTTGGAGGGAACCAAGTGATAGCTGTATTCTATCCAGAGAACAAGTTTGCCCAAGGGGAGTATGATGCCTAA

Homology

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BLAST of CmoCh17G005570 vs. Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 662.1 bits (1707), Expect = 3.8e-189
Identity = 329/379 (86.81%), Postives = 356/379 (93.93%), Query Frame = 1


Query: 29  GQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 88
           GQ+PGT P IPGMFP MFPLA+GQ FGALPVMP+QAMTQQATRHARRVYVGGLP  ANEQ
Sbjct: 195 GQVPGTNPPIPGMFPNMFPLASGQ-FGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQ 254

Query: 89  SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 148
           SVATFFS VM+AIGGNTAGPGDAVVNVYIN+EKKFAFVEMRSVEEASNAMALDGIIFEGA
Sbjct: 255 SVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIFEGA 314

Query: 149 PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 208
           P KVRRPSDYNPSLAATLGPSQP+PNLNLAAVGL+PGSAGGLEGPDRIFVGGLPYYFTEA
Sbjct: 315 PCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGLEGPDRIFVGGLPYYFTEA 374

Query: 209 QVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 268
           Q+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD+SVTDIACAALNGIKMGDKTLTVR
Sbjct: 375 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVR 434

Query: 269 RANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYED 328
           RANQGT QPKPEQESVLLHAQQQIALQ+LMLQP  ++TKVL LT+V++ +EL +DEDY+D
Sbjct: 435 RANQGTTQPKPEQESVLLHAQQQIALQRLMLQPATLATKVLSLTEVISADELNDDEDYQD 494

Query: 329 IMEDMRGEGGKFGALVNVVIPRPRPN-EAAPGVGKVFLEYADIESATKARSGLNGRKFGG 388
           I+EDMR E GKFG+LVNVVIPRP PN E  PGVGKVFLEYAD++S++KAR  LNGRKFGG
Sbjct: 495 ILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGG 554

Query: 389 NQVIAVFYPENKFAQGEYD 407
           NQV+AVFYPENKF +G+YD
Sbjct: 555 NQVVAVFYPENKFYEGDYD 572

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BLAST of CmoCh17G005570 vs. Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 660.2 bits (1702), Expect = 1.4e-188
Identity = 327/380 (86.05%), Postives = 355/380 (93.42%), Query Frame = 1


Query: 29  GQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 88
           GQ+PGT PAIPG+F  MFPLA+ Q FGALP+MPVQAMTQQATRHARRVYVGGLPPTANEQ
Sbjct: 177 GQVPGTNPAIPGLFSNMFPLASSQ-FGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQ 236

Query: 89  SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 148
           SVATFFS VM AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDG+IFEG 
Sbjct: 237 SVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGG 296

Query: 149 PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 208
           PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVG TPGS+GGLEGPDRIFVGGLPYYFTE+
Sbjct: 297 PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGGLEGPDRIFVGGLPYYFTES 356

Query: 209 QVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 268
           Q+RELLESFG LRGFDLVKDRETGNSKGYAFCVYQD+SVTDIACAALNGIKMGDKTLTVR
Sbjct: 357 QIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVR 416

Query: 269 RANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYED 328
           RANQGT QP PEQESVLLHAQQQIALQ+ MLQPGA++TKVLCLT+VVT +EL +D+DY+D
Sbjct: 417 RANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALATKVLCLTEVVTVDELNDDDDYQD 476

Query: 329 IMEDMRGEGGKFGALVNVVIPRPRPNEA-APGVGKVFLEYADIESATKARSGLNGRKFGG 388
           I+EDMR E  KFGALVNVVIPRP PN    PG+GKVFLEYAD++ ++KAR GLNGRKFGG
Sbjct: 477 ILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGG 536

Query: 389 NQVIAVFYPENKFAQGEYDA 408
           NQV+AVFYPENKF++G+Y+A
Sbjct: 537 NQVVAVFYPENKFSEGDYEA 555

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BLAST of CmoCh17G005570 vs. Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=1 SV=2)

HSP 1 Score: 641.3 bits (1653), Expect = 6.9e-183
Identity = 320/383 (83.55%), Postives = 350/383 (91.38%), Query Frame = 1


Query: 28  TGQIPGTTPAIPG--MFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTA 87
           TGQ+P   P +PG  MFP MFPL TGQ FG L +MP+QAMTQQATRHARRVYVGGL PTA
Sbjct: 191 TGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTA 250

Query: 88  NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIF 147
           NEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM+LDGIIF
Sbjct: 251 NEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIF 310

Query: 148 EGAPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYF 207
           EGAPVKVRRPSDYNPSLAATLGPSQPSP+LNLAAVGLTPG++GGLEGPDRIFVGGLPYYF
Sbjct: 311 EGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYF 370

Query: 208 TEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 267
           TE+QVRELLESFG L+GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 430

Query: 268 TVRRANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDED 327
           TVRRANQGT   KPEQE+VLLHAQQQIA Q++MLQPGAV+T V+CLTQVVT +EL +DE+
Sbjct: 431 TVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVVTEDELRDDEE 490

Query: 328 YEDIMEDMRGEGGKFGALVNVVIPRPRPN-EAAPGVGKVFLEYADIESATKARSGLNGRK 387
           Y DIMEDMR EGGKFGAL NVVIPRP PN E   G+GKVFL+YAD + +T+AR G+NGRK
Sbjct: 491 YGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRK 550

Query: 388 FGGNQVIAVFYPENKFAQGEYDA 408
           FGGN+V+AV+YPE+KF QG+Y A
Sbjct: 551 FGGNEVVAVYYPEDKFEQGDYGA 573

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BLAST of CmoCh17G005570 vs. Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 632.5 bits (1630), Expect = 3.2e-180
Identity = 313/381 (82.15%), Postives = 345/381 (90.55%), Query Frame = 1


Query: 29  GQIPG--TTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTAN 88
           GQ+P   TT  IPGMF  MFP+  GQ  GALPV+PVQAMTQQATRHARRVYVGGLPPTAN
Sbjct: 208 GQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTAN 267

Query: 89  EQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFE 148
           EQSV+TFFSQVM+AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII E
Sbjct: 268 EQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILE 327

Query: 149 GAPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFT 208
           G PVKVRRP+DYNPSLAATLGPSQP+PNLNL AVGL+ GS GGLEGPDRIFVGGLPYYFT
Sbjct: 328 GVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFT 387

Query: 209 EAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 268
           E Q+RELLESFGPLRGF+LVKDRETGNSKGYAFCVYQD SVTDIACAALNGIKMGDKTLT
Sbjct: 388 EVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLT 447

Query: 269 VRRANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDY 328
           VRRA QG  QPKPEQE VLL+AQQQIALQ+LM QPG   TK++CLTQVVT ++L +DE+Y
Sbjct: 448 VRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEY 507

Query: 329 EDIMEDMRGEGGKFGALVNVVIPRPRP-NEAAPGVGKVFLEYADIESATKARSGLNGRKF 388
            +IMEDMR EGGKFG LVNVVIPRP P ++  PGVGKVFLEYAD++ ++KARSG+NGRKF
Sbjct: 508 AEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKF 567

Query: 389 GGNQVIAVFYPENKFAQGEYD 407
           GGNQV+AV+YPE+K+AQG+Y+
Sbjct: 568 GGNQVVAVYYPEDKYAQGDYE 588

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BLAST of CmoCh17G005570 vs. Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=3 SV=2)

HSP 1 Score: 614.0 bits (1582), Expect = 1.2e-174
Identity = 310/379 (81.79%), Postives = 340/379 (89.71%), Query Frame = 1


Query: 30  QIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQS 89
           Q PGT  AIPGMFP M P+  GQ F  L + P QAMTQQATRHARRVYVGGLPPTANEQS
Sbjct: 174 QFPGT--AIPGMFPNMLPMGVGQ-FNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQS 233

Query: 90  VATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 149
           VA +F+QVMAAIGGNTAGPGDAV+NVYINH+KKFAFVEMRSVEEASNAMALDGI+FEGAP
Sbjct: 234 VAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAP 293

Query: 150 VKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ 209
           VKVRRP+DYNPSLAA LGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ
Sbjct: 294 VKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ 353

Query: 210 VRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 269
           VRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDIACAALNGIKMGDKTLTVRR
Sbjct: 354 VRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRR 413

Query: 270 ANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDI 329
           ANQG  QP+PEQES+LL AQQQ+ LQKL+ Q GA+ TKV+CLTQVV+ +EL +DE+YEDI
Sbjct: 414 ANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVSADELKDDEEYEDI 473

Query: 330 MEDMRGEGGKFGALVNVVIPRPRPNE-AAPGVGKVFLEYADIESATKARSGLNGRKFGGN 389
           MEDMR E GK+G L+ VVIPRP P+     GVGKVFLEYAD++ ATKA++ ++GRKFGGN
Sbjct: 474 MEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGN 533

Query: 390 QVIAVFYPENKFAQGEYDA 408
            V+AVFYPENKF+  EYDA
Sbjct: 534 PVVAVFYPENKFSSAEYDA 548

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BLAST of CmoCh17G005570 vs. TrEMBL
Match: A0A0A0K920_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022350 PE=4 SV=1)

HSP 1 Score: 740.7 bits (1911), Expect = 9.3e-211
Identity = 372/379 (98.15%), Postives = 376/379 (99.21%), Query Frame = 1


Query: 29  GQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 88
           GQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ
Sbjct: 210 GQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 269

Query: 89  SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 148
           SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA
Sbjct: 270 SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 329

Query: 149 PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 208
           PVKVRRPSDYNPSLAATLGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA
Sbjct: 330 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 389

Query: 209 QVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 268
           QVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR
Sbjct: 390 QVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 449

Query: 269 RANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYED 328
           RANQG NQPKPEQESVLLHAQQQIALQ LMLQPGAVSTKVLCLTQVVTPEELINDEDYED
Sbjct: 450 RANQGANQPKPEQESVLLHAQQQIALQ-LMLQPGAVSTKVLCLTQVVTPEELINDEDYED 509

Query: 329 IMEDMRGEGGKFGALVNVVIPRPRPNEAAPGVGKVFLEYADIESATKARSGLNGRKFGGN 388
           IMEDMRGEGGKFG LVNVVIPRPRPNEAAPGVGKVFLEYADI+SATKAR+GLNGRKFGGN
Sbjct: 510 IMEDMRGEGGKFGTLVNVVIPRPRPNEAAPGVGKVFLEYADIDSATKARAGLNGRKFGGN 569

Query: 389 QVIAVFYPENKFAQGEYDA 408
           QV+AVFYPENKFAQGEYDA
Sbjct: 570 QVMAVFYPENKFAQGEYDA 587

[Close]

BLAST of CmoCh17G005570 vs. TrEMBL
Match: V4UHX9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025221mg PE=4 SV=1)

HSP 1 Score: 695.7 bits (1794), Expect = 3.4e-197
Identity = 344/379 (90.77%), Postives = 364/379 (96.04%), Query Frame = 1


Query: 29  GQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 88
           GQIPG  PAIPGMFP MFPL TGQ FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ
Sbjct: 214 GQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 273

Query: 89  SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 148
           SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA
Sbjct: 274 SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 333

Query: 149 PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 208
           PVKVRRPSDYNPSLAATLGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA
Sbjct: 334 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 393

Query: 209 QVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 268
           Q+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR
Sbjct: 394 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 453

Query: 269 RANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYED 328
           RANQG NQPKPEQESVLLHAQQQIALQ+LMLQPG+V +KV+CLTQVV+ +EL +DE+YE+
Sbjct: 454 RANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEE 513

Query: 329 IMEDMRGEGGKFGALVNVVIPRPRPN-EAAPGVGKVFLEYADIESATKARSGLNGRKFGG 388
           I+EDMR EGGKFG LVNV+IPRP PN E +PGVGKVFLEYADI+ ATKAR+G+NGRKFGG
Sbjct: 514 ILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGG 573

Query: 389 NQVIAVFYPENKFAQGEYD 407
           NQV+AVFYPENKFAQG+Y+
Sbjct: 574 NQVVAVFYPENKFAQGDYE 592

[Close]

BLAST of CmoCh17G005570 vs. TrEMBL
Match: V4SJC5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025221mg PE=4 SV=1)

HSP 1 Score: 691.8 bits (1784), Expect = 5.0e-196
Identity = 344/379 (90.77%), Postives = 364/379 (96.04%), Query Frame = 1


Query: 29  GQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 88
           GQIPG  PAIPGMFP MFPL TGQ FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ
Sbjct: 214 GQIPGANPAIPGMFPNMFPLVTGQ-FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 273

Query: 89  SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 148
           SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA
Sbjct: 274 SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 333

Query: 149 PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 208
           PVKVRRPSDYNPSLAATLGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA
Sbjct: 334 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 393

Query: 209 QVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 268
           Q+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR
Sbjct: 394 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 453

Query: 269 RANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYED 328
           RANQG NQPKPEQESVLLHAQQQIALQ+LMLQPG+V +KV+CLTQVV+ +EL +DE+YE+
Sbjct: 454 RANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEE 513

Query: 329 IMEDMRGEGGKFGALVNVVIPRPRPN-EAAPGVGKVFLEYADIESATKARSGLNGRKFGG 388
           I+EDMR EGGKFG LVNV+IPRP PN E +PGVGKVFLEYADI+ ATKAR+G+NGRKFGG
Sbjct: 514 ILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGG 573

Query: 389 NQVIAVFYPENKFAQGEYD 407
           NQV+AVFYPENKFAQG+Y+
Sbjct: 574 NQVVAVFYPENKFAQGDYE 591

[Close]

BLAST of CmoCh17G005570 vs. TrEMBL
Match: F6GWY2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01450 PE=4 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 2.3e-193
Identity = 342/379 (90.24%), Postives = 361/379 (95.25%), Query Frame = 1


Query: 29  GQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 88
           GQIPGTTP IPGMFP MFPLA+GQ FGALPVMPVQAMTQQATRHARRVYVGGL PTANEQ
Sbjct: 187 GQIPGTTPTIPGMFPNMFPLASGQ-FGALPVMPVQAMTQQATRHARRVYVGGLSPTANEQ 246

Query: 89  SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 148
           SVATFFSQVM+AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA
Sbjct: 247 SVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 306

Query: 149 PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 208
           PVKVRRPSDYNPSLAATLGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA
Sbjct: 307 PVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 366

Query: 209 QVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 268
           Q+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR
Sbjct: 367 QIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 426

Query: 269 RANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYED 328
           RANQG +QPKPEQE+VLLHAQQQIALQ+LM QPGA++TKV+CLTQVV  +EL +DE YED
Sbjct: 427 RANQGASQPKPEQENVLLHAQQQIALQRLMFQPGALATKVVCLTQVVNADELQDDEAYED 486

Query: 329 IMEDMRGEGGKFGALVNVVIPRPRPN-EAAPGVGKVFLEYADIESATKARSGLNGRKFGG 388
           I+EDMR EGGKFG LVNV IPRP+PN E  PG+GKVFLEYADI+ ATKAR+GLNGRKF G
Sbjct: 487 IVEDMRIEGGKFGNLVNVAIPRPKPNGEPTPGLGKVFLEYADIDGATKARTGLNGRKFDG 546

Query: 389 NQVIAVFYPENKFAQGEYD 407
           NQV+AVFYPENKF+QGEYD
Sbjct: 547 NQVVAVFYPENKFSQGEYD 564

[Close]

BLAST of CmoCh17G005570 vs. TrEMBL
Match: M5W6T7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003118mg PE=4 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 2.3e-193
Identity = 340/381 (89.24%), Postives = 363/381 (95.28%), Query Frame = 1


Query: 29  GQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 88
           GQIPGT+P IPGMFP MFPLATGQ FG+LPVMPVQAMTQQATRHARRVYVGGLPPTANEQ
Sbjct: 220 GQIPGTSPTIPGMFPNMFPLATGQQFGSLPVMPVQAMTQQATRHARRVYVGGLPPTANEQ 279

Query: 89  SVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 148
           SVATFFSQVMAAIGGNTA PGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA
Sbjct: 280 SVATFFSQVMAAIGGNTAAPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGA 339

Query: 149 PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 208
           PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA
Sbjct: 340 PVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEA 399

Query: 209 QVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 268
           Q++ELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR
Sbjct: 400 QIKELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVR 459

Query: 269 RANQGTNQPKPEQESVLLHAQQQIALQKLML--QPGAVSTKVLCLTQVVTPEELINDEDY 328
           RANQG NQPKPEQESVLLHAQQQIALQ+ ML   P +V+TKV+CLTQVVT +EL +D++Y
Sbjct: 460 RANQGANQPKPEQESVLLHAQQQIALQRFMLLQPPSSVATKVVCLTQVVTADELRDDDEY 519

Query: 329 EDIMEDMRGEGGKFGALVNVVIPRPRPN-EAAPGVGKVFLEYADIESATKARSGLNGRKF 388
           EDI+EDMR EGGKFG LVNV+IPRPRP+ E  PGVGKVFLEYAD++ +TKAR+GLNGRKF
Sbjct: 520 EDILEDMRLEGGKFGPLVNVIIPRPRPDGEPLPGVGKVFLEYADVDGSTKARTGLNGRKF 579

Query: 389 GGNQVIAVFYPENKFAQGEYD 407
           GGNQV+AVFYPE+KFAQG+Y+
Sbjct: 580 GGNQVVAVFYPEDKFAQGDYE 600

[Close]

BLAST of CmoCh17G005570 vs. TAIR10
Match: AT4G36690.1 (AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor)

HSP 1 Score: 641.3 bits (1653), Expect = 3.9e-184
Identity = 320/383 (83.55%), Postives = 350/383 (91.38%), Query Frame = 1


Query: 28  TGQIPGTTPAIPG--MFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTA 87
           TGQ+P   P +PG  MFP MFPL TGQ FG L +MP+QAMTQQATRHARRVYVGGL PTA
Sbjct: 191 TGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTA 250

Query: 88  NEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIF 147
           NEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM+LDGIIF
Sbjct: 251 NEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIF 310

Query: 148 EGAPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYF 207
           EGAPVKVRRPSDYNPSLAATLGPSQPSP+LNLAAVGLTPG++GGLEGPDRIFVGGLPYYF
Sbjct: 311 EGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYF 370

Query: 208 TEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 267
           TE+QVRELLESFG L+GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 430

Query: 268 TVRRANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDED 327
           TVRRANQGT   KPEQE+VLLHAQQQIA Q++MLQPGAV+T V+CLTQVVT +EL +DE+
Sbjct: 431 TVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVVTEDELRDDEE 490

Query: 328 YEDIMEDMRGEGGKFGALVNVVIPRPRPN-EAAPGVGKVFLEYADIESATKARSGLNGRK 387
           Y DIMEDMR EGGKFGAL NVVIPRP PN E   G+GKVFL+YAD + +T+AR G+NGRK
Sbjct: 491 YGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRK 550

Query: 388 FGGNQVIAVFYPENKFAQGEYDA 408
           FGGN+V+AV+YPE+KF QG+Y A
Sbjct: 551 FGGNEVVAVYYPEDKFEQGDYGA 573

[Close]

BLAST of CmoCh17G005570 vs. TAIR10
Match: AT1G60900.1 (AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor)

HSP 1 Score: 632.5 bits (1630), Expect = 1.8e-181
Identity = 313/381 (82.15%), Postives = 345/381 (90.55%), Query Frame = 1


Query: 29  GQIPG--TTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTAN 88
           GQ+P   TT  IPGMF  MFP+  GQ  GALPV+PVQAMTQQATRHARRVYVGGLPPTAN
Sbjct: 208 GQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTAN 267

Query: 89  EQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFE 148
           EQSV+TFFSQVM+AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII E
Sbjct: 268 EQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILE 327

Query: 149 GAPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFT 208
           G PVKVRRP+DYNPSLAATLGPSQP+PNLNL AVGL+ GS GGLEGPDRIFVGGLPYYFT
Sbjct: 328 GVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFT 387

Query: 209 EAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 268
           E Q+RELLESFGPLRGF+LVKDRETGNSKGYAFCVYQD SVTDIACAALNGIKMGDKTLT
Sbjct: 388 EVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLT 447

Query: 269 VRRANQGTNQPKPEQESVLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDY 328
           VRRA QG  QPKPEQE VLL+AQQQIALQ+LM QPG   TK++CLTQVVT ++L +DE+Y
Sbjct: 448 VRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEY 507

Query: 329 EDIMEDMRGEGGKFGALVNVVIPRPRP-NEAAPGVGKVFLEYADIESATKARSGLNGRKF 388
            +IMEDMR EGGKFG LVNVVIPRP P ++  PGVGKVFLEYAD++ ++KARSG+NGRKF
Sbjct: 508 AEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKF 567

Query: 389 GGNQVIAVFYPENKFAQGEYD 407
           GGNQV+AV+YPE+K+AQG+Y+
Sbjct: 568 GGNQVVAVYYPEDKYAQGDYE 588

[Close]

BLAST of CmoCh17G005570 vs. TAIR10
Match: AT1G60830.1 (AT1G60830.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 165.6 bits (418), Expect = 6.3e-41
Identity = 76/110 (69.09%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 298 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPN-EA 357
           MLQPG   TK++CLTQVVT ++L +D +Y DIMEDM  EGGKFG LVNVVIPRP P+ + 
Sbjct: 1   MLQPGGTPTKIVCLTQVVTADDLRDDAEYADIMEDMSQEGGKFGNLVNVVIPRPNPDHDP 60

Query: 358 APGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYD 407
            PGVGKVFLEYAD++ ++KARSG+NGRKFGGNQV+AV+YPE+K+AQG+Y+
Sbjct: 61  TPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 110

[Close]

BLAST of CmoCh17G005570 vs. TAIR10
Match: AT5G09880.1 (AT5G09880.1 Splicing factor, CC1-like)

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-12
Identity = 67/251 (26.69%), Postives = 110/251 (43.82%), Query Frame = 1


Query: 71  RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 130
           R  R V+   +P  A E+ V  FFS+               +++      K   ++E   
Sbjct: 165 RDQRTVFAYQMPLKATERDVYEFFSKA------GKVRDVRLIMDRNSRRSKGVGYIEFYD 224

Query: 131 VEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSAGGL 190
           V     A+AL G +F G PV V+ PS+   +LA +          N   VG T       
Sbjct: 225 VMSVPMAIALSGQLFLGQPVMVK-PSEAEKNLAQS----------NSTTVGGT------- 284

Query: 191 EGPD--RIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 250
            GP   +++VG L +  +E Q+R++ E+FGP+    L  D ETG  KG+ F  +  L  +
Sbjct: 285 -GPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHS 344

Query: 251 DIACAALNG-IKMGDKTLTVRRANQ--GTNQPKPEQE--------SVLLHAQQQIALQKL 309
             A  ALNG +++  +T+ V   +   GT    P+           + L+AQ +  L + 
Sbjct: 345 KAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQK 390

[Close]

BLAST of CmoCh17G005570 vs. TAIR10
Match: AT2G33435.1 (AT2G33435.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 69.3 bits (168), Expect = 6.1e-12
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 68  QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVE 127
           ++TR  RR+Y   +P +A+E+S+   F+  M + G N     +  ++  IN EK  A VE
Sbjct: 872 ESTRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVE 931

Query: 128 MRSVEEASNAMALDGIIFEGAPVKVRRPSDY 159
             + ++AS A++LDG  F G+ +K+RRP DY
Sbjct: 932 FLTPQDASAALSLDGCSFAGSNLKIRRPKDY 962

[Close]

BLAST of CmoCh17G005570 vs. NCBI nr
Match: gi|778709952|ref|XP_011656487.1| (PREDICTED: splicing factor U2af large subunit A isoform X2 [Cucumis sativus])

HSP 1 Score: 795.4 bits (2053), Expect = 4.6e-227
Identity = 400/423 (94.56%), Postives = 405/423 (95.74%), Query Frame = 1


Query: 1   MLDYLPLCADHGRELTSVAFMCKKDQCTGQ----------------IPGTTPAIPGMFPT 60
           MLDYLPLCAD+GRELTSVAFMCKKDQCTGQ                IPGTTPAIPGMFPT
Sbjct: 200 MLDYLPLCADNGRELTSVAFMCKKDQCTGQMDLVRLHLETYSFLGQIPGTTPAIPGMFPT 259

Query: 61  MFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGN 120
           MFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGN
Sbjct: 260 MFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGN 319

Query: 121 TAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA 180
           TAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA
Sbjct: 320 TAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA 379

Query: 181 TLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFD 240
           TLGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFD
Sbjct: 380 TLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFD 439

Query: 241 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQESV 300
           LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG NQPKPEQESV
Sbjct: 440 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV 499

Query: 301 LLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALV 360
           LLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFG LV
Sbjct: 500 LLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGTLV 559

Query: 361 NVVIPRPRPNEAAPGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGE 408
           NVVIPRPRPNEAAPGVGKVFLEYADI+SATKAR+GLNGRKFGGNQV+AVFYPENKFAQGE
Sbjct: 560 NVVIPRPRPNEAAPGVGKVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGE 619

[Close]

BLAST of CmoCh17G005570 vs. NCBI nr
Match: gi|778709980|ref|XP_011656494.1| (PREDICTED: splicing factor U2af large subunit B isoform X10 [Cucumis sativus])

HSP 1 Score: 795.0 bits (2052), Expect = 6.0e-227
Identity = 400/424 (94.34%), Postives = 405/424 (95.52%), Query Frame = 1


Query: 1   MLDYLPLCADHGRELTSVAFMCKKDQCT-----------------GQIPGTTPAIPGMFP 60
           MLDYLPLCAD+GRELTSVAFMCKKDQCT                 GQIPGTTPAIPGMFP
Sbjct: 1   MLDYLPLCADNGRELTSVAFMCKKDQCTGQMDLVRLHLETYSFLAGQIPGTTPAIPGMFP 60

Query: 61  TMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGG 120
           TMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGG
Sbjct: 61  TMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGG 120

Query: 121 NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLA 180
           NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLA
Sbjct: 121 NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLA 180

Query: 181 ATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGF 240
           ATLGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGF
Sbjct: 181 ATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGF 240

Query: 241 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQES 300
           DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG NQPKPEQES
Sbjct: 241 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQES 300

Query: 301 VLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGAL 360
           VLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFG L
Sbjct: 301 VLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGTL 360

Query: 361 VNVVIPRPRPNEAAPGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQG 408
           VNVVIPRPRPNEAAPGVGKVFLEYADI+SATKAR+GLNGRKFGGNQV+AVFYPENKFAQG
Sbjct: 361 VNVVIPRPRPNEAAPGVGKVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQG 420

[Close]

BLAST of CmoCh17G005570 vs. NCBI nr
Match: gi|778709949|ref|XP_011656485.1| (PREDICTED: splicing factor U2af large subunit A isoform X1 [Cucumis sativus])

HSP 1 Score: 795.0 bits (2052), Expect = 6.0e-227
Identity = 400/424 (94.34%), Postives = 405/424 (95.52%), Query Frame = 1


Query: 1   MLDYLPLCADHGRELTSVAFMCKKDQCT-----------------GQIPGTTPAIPGMFP 60
           MLDYLPLCAD+GRELTSVAFMCKKDQCT                 GQIPGTTPAIPGMFP
Sbjct: 200 MLDYLPLCADNGRELTSVAFMCKKDQCTGQMDLVRLHLETYSFLAGQIPGTTPAIPGMFP 259

Query: 61  TMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGG 120
           TMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGG
Sbjct: 260 TMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGG 319

Query: 121 NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLA 180
           NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLA
Sbjct: 320 NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLA 379

Query: 181 ATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGF 240
           ATLGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGF
Sbjct: 380 ATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGF 439

Query: 241 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQES 300
           DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG NQPKPEQES
Sbjct: 440 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQES 499

Query: 301 VLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGAL 360
           VLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFG L
Sbjct: 500 VLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGTL 559

Query: 361 VNVVIPRPRPNEAAPGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQG 408
           VNVVIPRPRPNEAAPGVGKVFLEYADI+SATKAR+GLNGRKFGGNQV+AVFYPENKFAQG
Sbjct: 560 VNVVIPRPRPNEAAPGVGKVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQG 619

[Close]

BLAST of CmoCh17G005570 vs. NCBI nr
Match: gi|659089607|ref|XP_008445603.1| (PREDICTED: splicing factor U2af large subunit A-like isoform X3 [Cucumis melo])

HSP 1 Score: 793.5 bits (2048), Expect = 1.7e-226
Identity = 399/423 (94.33%), Postives = 404/423 (95.51%), Query Frame = 1


Query: 1   MLDYLPLCADHGRELTSVAFMCKKDQCT----------------GQIPGTTPAIPGMFPT 60
           MLDYLPLCAD+GRELTSVAFMCKKDQCT                GQIPG TPAIPGMFPT
Sbjct: 200 MLDYLPLCADNGRELTSVAFMCKKDQCTSQMDLVRLHLETYSFLGQIPGATPAIPGMFPT 259

Query: 61  MFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGN 120
           MFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGN
Sbjct: 260 MFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGN 319

Query: 121 TAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA 180
           TAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA
Sbjct: 320 TAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAA 379

Query: 181 TLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFD 240
           TLGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFD
Sbjct: 380 TLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFD 439

Query: 241 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQESV 300
           LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG NQPKPEQESV
Sbjct: 440 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESV 499

Query: 301 LLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALV 360
           LLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFG LV
Sbjct: 500 LLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGTLV 559

Query: 361 NVVIPRPRPNEAAPGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGE 408
           NVVIPRPRPNEAAPGVGKVFLEYADI+SATKAR+GLNGRKFGGNQV+AVFYPENKFAQGE
Sbjct: 560 NVVIPRPRPNEAAPGVGKVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQGE 619

[Close]

BLAST of CmoCh17G005570 vs. NCBI nr
Match: gi|659089603|ref|XP_008445601.1| (PREDICTED: splicing factor U2af large subunit A-like isoform X1 [Cucumis melo])

HSP 1 Score: 793.1 bits (2047), Expect = 2.3e-226
Identity = 399/424 (94.10%), Postives = 404/424 (95.28%), Query Frame = 1


Query: 1   MLDYLPLCADHGRELTSVAFMCKKDQCT-----------------GQIPGTTPAIPGMFP 60
           MLDYLPLCAD+GRELTSVAFMCKKDQCT                 GQIPG TPAIPGMFP
Sbjct: 200 MLDYLPLCADNGRELTSVAFMCKKDQCTSQMDLVRLHLETYSFLAGQIPGATPAIPGMFP 259

Query: 61  TMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGG 120
           TMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGG
Sbjct: 260 TMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGG 319

Query: 121 NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLA 180
           NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLA
Sbjct: 320 NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLA 379

Query: 181 ATLGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGF 240
           ATLGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGF
Sbjct: 380 ATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGF 439

Query: 241 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQES 300
           DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG NQPKPEQES
Sbjct: 440 DLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQES 499

Query: 301 VLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGAL 360
           VLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFG L
Sbjct: 500 VLLHAQQQIALQKLMLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGTL 559

Query: 361 VNVVIPRPRPNEAAPGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQG 408
           VNVVIPRPRPNEAAPGVGKVFLEYADI+SATKAR+GLNGRKFGGNQV+AVFYPENKFAQG
Sbjct: 560 VNVVIPRPRPNEAAPGVGKVFLEYADIDSATKARAGLNGRKFGGNQVMAVFYPENKFAQG 619

The following BLAST results are available for this feature:

BLAST of CmoCh17G005570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U2A2B_NICPL	3.8e-189	86.81	Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=...	[more]
U2A2A_NICPL	1.4e-188	86.05	Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=...	[more]
U2A2A_ARATH	6.9e-183	83.55	Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=1 SV=...	[more]
U2A2B_ARATH	3.2e-180	82.15	Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=...	[more]
U2A2B_ORYSJ	1.2e-174	81.79	Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B ...	[more]

BLAST of CmoCh17G005570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K920_CUCSA	9.3e-211	98.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022350 PE=4 SV=1	[more]
V4UHX9_9ROSI	3.4e-197	90.77	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025221mg PE=4 SV=1	[more]
V4SJC5_9ROSI	5.0e-196	90.77	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025221mg PE=4 SV=1	[more]
F6GWY2_VITVI	2.3e-193	90.24	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01450 PE=4 SV=...	[more]
M5W6T7_PRUPE	2.3e-193	89.24	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003118mg PE=4 SV=1	[more]

BLAST of CmoCh17G005570 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G36690.1	3.9e-184	83.55	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT1G60900.1	1.8e-181	82.15	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT1G60830.1	6.3e-41	69.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G09880.1	3.6e-12	26.69	Splicing factor, CC1-like	[more]
AT2G33435.1	6.1e-12	37.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh17G005570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778709952\|ref\|XP_011656487.1\|	4.6e-227	94.56	PREDICTED: splicing factor U2af large subunit A isoform X2 [Cucumis sativus]	[more]
gi\|778709980\|ref\|XP_011656494.1\|	6.0e-227	94.34	PREDICTED: splicing factor U2af large subunit B isoform X10 [Cucumis sativus]	[more]
gi\|778709949\|ref\|XP_011656485.1\|	6.0e-227	94.34	PREDICTED: splicing factor U2af large subunit A isoform X1 [Cucumis sativus]	[more]
gi\|659089607\|ref\|XP_008445603.1\|	1.7e-226	94.33	PREDICTED: splicing factor U2af large subunit A-like isoform X3 [Cucumis melo]	[more]
gi\|659089603\|ref\|XP_008445601.1\|	2.3e-226	94.10	PREDICTED: splicing factor U2af large subunit A-like isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR003954	RRM_dom_euk
IPR006529	U2AF_lg
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G005570.1	CmoCh17G005570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 338..390 score: 4.0E-5coord: 196..265 score: 2.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 195..268 score: 9.2E-21coord: 75..153 score: 6.0E-13coord: 308..394 score: 0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 307..398 score: 9.354coord: 194..272 score: 15.511coord: 74..157 score: 12
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 75..153 score: 17.0coord: 309..393 score: 0
IPR006529	U2 snRNP auxilliary factor, large subunit, splicing factor	TIGRFAMs	TIGR01642	TIGR01642	coord: 20..405 score: 2.0E
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 70..154 score: 1.4E-15coord: 306..396 score: 2.4E-22coord: 193..275 score: 1.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 74..159 score: 5.51E-16coord: 195..282 score: 1.5E-31coord: 314..397 score: 1.5
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 38..406 score: 2.9E
None	No IPR available	PANTHER	PTHR23139:SF62	SUBFAMILY NOT NAMED	coord: 38..406 score: 2.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G005570	CmaCh17G005750	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G005570	CmaCh08G000920	Cucurbita maxima (Rimu)	cmacmoB900
CmoCh17G005570	Cla007159	Watermelon (97103) v1	cmowmB333
CmoCh17G005570	Csa6G022350	Cucumber (Chinese Long) v2	cmocuB367
CmoCh17G005570	ClCG08G003940	Watermelon (Charleston Gray)	cmowcgB332
CmoCh17G005570	CSPI06G02880	Wild cucumber (PI 183967)	cmocpiB370
CmoCh17G005570	Lsi08G003240	Bottle gourd (USVL1VR-Ls)	cmolsiB350
CmoCh17G005570	Cp4.1LG12g04920	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G005570	Cp4.1LG17g09970	Cucurbita pepo (Zucchini)	cmocpeB354
CmoCh17G005570	MELO3C011498.2	Melon (DHL92) v3.6.1	cmomedB372
CmoCh17G005570	CsaV3_6G003130	Cucumber (Chinese Long) v3	cmocucB0441
CmoCh17G005570	Cla97C08G147280	Watermelon (97103) v2	cmowmbB368
CmoCh17G005570	CsGy6G002960	Cucumber (Gy14) v2	cgybcmoB742
CmoCh17G005570	Carg04919	Silver-seed gourd	carcmoB0117
CmoCh17G005570	Carg22626	Silver-seed gourd	carcmoB0306

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh17G005570	CmoCh08G000960	Cucurbita moschata (Rifu)	cmocmoB323

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G005570	Cucumber (Gy14) v1	cgycmoB1001
CmoCh17G005570	Wild cucumber (PI 183967)	cmocpiB366
CmoCh17G005570	Cucumber (Chinese Long) v2	cmocuB364
CmoCh17G005570	Cucumber (Gy14) v2	cgybcmoB739
CmoCh17G005570	Melon (DHL92) v3.6.1	cmomedB371
CmoCh17G005570	Cucumber (Chinese Long) v3	cmocucB0438
CmoCh17G005570	Wax gourd	cmowgoB0483