CmoCh17G004580 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G004580
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionAgamous-like MADS-box protein A, putative
LocationCmo_Chr17 : 3230566 .. 3231929 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTGAAAGTGGAAACCAGTTCGATGGAGCTGCTTGATCTCAGTAGTGTCGTTGCCGTTTTCGAGAGACTGTAATTCGGGATAGATTTTATGGAAAGCTTTATGGAAAGCTTGAACGACGACGGGGCCATTATCAATGAACAGAGAACAAAAGGAGAATCCGAAAAGAATAACTAGGAGAGTGAAGAAATTCATCGTAGAATTTGCTTTATTAGTGAAGTTTGTAGTGAAAAGAAATAAGAGTATGATTATATTTATAGAGGAAGAAATATAAATTTAGTCTAAAAATAGGAAAAATTGGTTAACATAATCTCACACTTAAATTTTAAAAAGTTTTATTGATGCTCAAAAATCTAAATTAATTTTAAAAAATAGCATTAACGCATTTAAATTTTATTAAAAATGTTTTAATATTAAATTGTCTACCTATATTGACAAATTATCTTTCAGGATATGAATTTTTTTTTTCTTTCTAAAAGCTTGAAATTAAGGTTACTTTTAAAAATTTATAAGCATTTTTTAAACGGATACTAACATGTCGTGAGAATCTTGTAAAGTTTATGGGTCATGAGAATCTTGTTGGCTAGAATTATGAGAAGGTTTGTTTGATTTGTTTGAATCACTGAGAATATTGAAGAACTATAGAGAATTGAATCAAATCGCTTCAATCTGAGATTGAATTAGCTGCTGAGTTTTGCATTACTGGAGTGGGAAGCAAGACATAAACGAGTTATTAGATGGAGACTAGTCACTTTTTTATACCTATGTAAATAACTTAAAAGCGAAAATGTTGTATTTATTGGAGATCTAACGTCCAACCTTTACTACAACGAAAGGATTTCAAAGTCAAAACCCAAAATTGGTCTATTATGATCGAGTTTTCGTATTCTATTATTATTATTATTATTTTATTTTAATTTTGTAACACCAATGTAAATAATTTATCACAATAAATAGCTGACTCACTTTAATTTTACTTATATTAATTACCGAAACTAAATAAAACAAAATTATTAATTTCACGAAATTTTTTTAGAAAACTCCTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACTAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGCCGGTGAGCTTTCTGTGCTATGCGGAGCAGAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGGTTTTTTTGTTTTGCACATCCGAATGTTGACGTGCTTTTGGATCGGTATTTGACTCGAAATTTGTCGCCGCTGAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAATTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

mRNA sequence

ATGAGGTTGAAAGTGGAAACCAGTTCGATGGAGCTGCTTGATCTCAGTAGTGTCGTTGCCAAAACTCCTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACTAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGCCGGTGAGCTTTCTAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGGTTTTTTTGTTTTGCACATCCGAATGTTGACGTGCTTTTGGATCGGTATTTGACTCGAAATTTGTCGCCGCTGAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAATTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

Coding sequence (CDS)

ATGAGGTTGAAAGTGGAAACCAGTTCGATGGAGCTGCTTGATCTCAGTAGTGTCGTTGCCAAAACTCCTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACTAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGCCGGTGAGCTTTCTAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGGTTTTTTTGTTTTGCACATCCGAATGTTGACGTGCTTTTGGATCGGTATTTGACTCGAAATTTGTCGCCGCTGAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAATTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA
Homology
[Close]
BLAST of CmoCh17G004580 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1 

Query: 18  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFF 77
           +V K+ GRQKIE+ K++ +S+  VTFSKRR+ LFKKA EL  L        +     + F
Sbjct: 1   MVKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVF 60

Query: 78  CFAHPNVDVLLDRYLTRNLSPLKPAEN 100
            F HPNVD ++DR++  N  PL P ++
Sbjct: 61  SFGHPNVDSVIDRFINNN--PLPPHQH 85

[Close]
BLAST of CmoCh17G004580 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-09
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 1 

Query: 24  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHP 83
           GRQKI + K++K+S + VTFSKRRA LFKKA EL  L   A +  I F      F F HP
Sbjct: 63  GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCG-AEIGIIVFSPAKKPFSFGHP 122

Query: 84  NVDVLLDRYLTRNLSPLKPAENF----VPVTEFNRDFADLVLKFEVAKK 123
           +V+ +LDRY++RN   L  ++          E N     ++ + E  KK
Sbjct: 123 SVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKK 170

[Close]
BLAST of CmoCh17G004580 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-09
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 1 

Query: 18  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------ 77
           +V KT GR+K+EI K+ K+S+  VTFSKR+A LFKKA E   L   A +  I F      
Sbjct: 1   MVKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCD-AKIAMIVFSPAGKV 60

Query: 78  FCFAHPNVDVLLDRY----LTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
           F F HPNVDVLLD +    +  N + L  +   + V   N+ + ++  + E  +K
Sbjct: 61  FSFGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQK 114

[Close]
BLAST of CmoCh17G004580 vs. TrEMBL
Match: A0A0A0LE01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.1e-29
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 1 

Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCG-AEVAIIVFSPNDKLFCF 70

Query: 81  AHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HP+VDVLLDRYLT NLSP KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  GHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKK 117

[Close]
BLAST of CmoCh17G004580 vs. TrEMBL
Match: A0A0A0LLS2_CUCSA (Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 56/107 (52.34%), Postives = 68/107 (63.55%), Query Frame = 1 

Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPS-----LASLRTIRFFCFA 80
           K+ GRQKIEIKKL  KS + VTFSKRRA LF KA ELS L       L    T + + F 
Sbjct: 3   KSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTFG 62

Query: 81  HPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
           HPNVD L+DR+LT N  P KP E ++P+ E NRD  D+  +FE  K+
Sbjct: 63  HPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKR 109

[Close]
BLAST of CmoCh17G004580 vs. TrEMBL
Match: A0A0A0LW53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-16
Identity = 53/108 (49.07%), Postives = 69/108 (63.89%), Query Frame = 1 

Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           K+ GR+KIEIK+L+K +++ VTFSKRR  LF KA ELS L   A +  + F      + F
Sbjct: 3   KSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCG-AEIAILLFSSRGKVYTF 62

Query: 81  AHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HPNVD LLDR+LT N  P KPAE ++P+ E N D      +FE+ KK
Sbjct: 63  GHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKK 109

[Close]
BLAST of CmoCh17G004580 vs. TrEMBL
Match: A0A166E1J6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006798 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 1 

Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFFCFA 80
           KT GRQKIEIKK+E    K VTFSKRRA LF KA EL  L     L  +     R + F 
Sbjct: 19  KTRGRQKIEIKKIENPGRKQVTFSKRRAGLFNKASELCVLTGAEILILVQSVGSRVYAFG 78

Query: 81  HPNVDVLLDRYLTRNLSPLKPAE--NFVPVTEFNRDFADLVLKFEVAK 122
           HPNVD L+D YL  N+S   P +  +     E+N+ + ++  + EV K
Sbjct: 79  HPNVDSLIDTYLGNNVSNSPPVDENSACMYEEYNKKYLEIAKEMEVEK 126

[Close]
BLAST of CmoCh17G004580 vs. TrEMBL
Match: V7C848_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G107400g PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 1 

Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           K  GR+KIEIKK+EK S+K VTFSKRR  LFKKA EL  L + AS+  I F      FCF
Sbjct: 18  KKGGRKKIEIKKIEKSSNKQVTFSKRRTGLFKKASELCLLCN-ASMAIIVFSPAEKLFCF 77

Query: 81  AHPNVDVLLDRYL--TRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HP+++ +++ YL   +   PL+  E  V   E N+ + +   K E+ KK
Sbjct: 78  GHPDLEGIVESYLRGDKVFQPLESRERSVSYEECNKQYEEATKKLELEKK 126

[Close]
BLAST of CmoCh17G004580 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 63.9 bits (154), Expect = 7.7e-11
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1 

Query: 18  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFF 77
           +V K+ GRQKIE+ K++ +S+  VTFSKRR+ LFKKA EL  L        +     + F
Sbjct: 1   MVKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVF 60

Query: 78  CFAHPNVDVLLDRYLTRNLSPLKPAEN 100
            F HPNVD ++DR++  N  PL P ++
Sbjct: 61  SFGHPNVDSVIDRFINNN--PLPPHQH 85

[Close]
BLAST of CmoCh17G004580 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 1 

Query: 18  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------ 77
           +V KT GR+K+EI K+ K+S+  VTFSKR+A LFKKA E   L   A +  I F      
Sbjct: 1   MVKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCD-AKIAMIVFSPAGKV 60

Query: 78  FCFAHPNVDVLLDRY----LTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
           F F HPNVDVLLD +    +  N + L  +   + V   N+ + ++  + E  +K
Sbjct: 61  FSFGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQK 114

[Close]
BLAST of CmoCh17G004580 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 1 

Query: 24  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHP 83
           GRQKI + K++K+S + VTFSKRRA LFKKA EL  L   A +  I F      F F HP
Sbjct: 63  GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCG-AEIGIIVFSPAKKPFSFGHP 122

Query: 84  NVDVLLDRYLTRNLSPLKPAENF----VPVTEFNRDFADLVLKFEVAKK 123
           +V+ +LDRY++RN   L  ++          E N     ++ + E  KK
Sbjct: 123 SVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKK 170

[Close]
BLAST of CmoCh17G004580 vs. TAIR10
Match: AT4G36590.1 (AT4G36590.1 MADS-box transcription factor family protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 18 VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFF 77
          +V  T GRQKIE+KK+E +S+  VTFSKRR  LFKKA EL  L     L  +     + F
Sbjct: 1  MVRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVF 60

Query: 78 CFAHPNVDVLLDRYLTRN 91
           F HP+V  L+ R+   N
Sbjct: 61 SFGHPSVQELIHRFSNPN 78

[Close]
BLAST of CmoCh17G004580 vs. TAIR10
Match: AT1G17310.1 (AT1G17310.1 MADS-box transcription factor family protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1 

Query: 22  TPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELS-----RLPSLASLRTIRFFCFAH 81
           T GRQKIEIKK+E+++ + VTFSKRR  LFKK+ ELS     ++  +   +  R + F H
Sbjct: 46  TRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRFGH 105

Query: 82  PNVDVLLDRYLTRNLSPLK 96
             VD L+D+YL +  SP+K
Sbjct: 106 --VDALIDKYLRK--SPVK 120

[Close]
BLAST of CmoCh17G004580 vs. NCBI nr
Match: gi|659133060|ref|XP_008466532.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 4.5e-29
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 1 

Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCG-AEVAIIVFSPNDKVFCF 70

Query: 81  AHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HP+VDVLLDRYLT NLSP KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  GHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKK 117

[Close]
BLAST of CmoCh17G004580 vs. NCBI nr
Match: gi|700204855|gb|KGN59988.1| (hypothetical protein Csa_3G860240 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 5.9e-29
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 1 

Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCG-AEVAIIVFSPNDKLFCF 70

Query: 81  AHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HP+VDVLLDRYLT NLSP KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  GHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKK 117

[Close]
BLAST of CmoCh17G004580 vs. NCBI nr
Match: gi|778686644|ref|XP_004147877.2| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 5.9e-29
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 1 

Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCF 80
           KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF
Sbjct: 3   KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCG-AEVAIIVFSPNDKLFCF 62

Query: 81  AHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
            HP+VDVLLDRYLT NLSP KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 63  GHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKK 109

[Close]
BLAST of CmoCh17G004580 vs. NCBI nr
Match: gi|659115872|ref|XP_008457781.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 1 

Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPS-----LASLRTIRFFCFA 80
           K+ GRQKIEIKKL  KS + VTFSKRRA LF KA ELS L       L    T + + F 
Sbjct: 3   KSSGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTGKIYTFG 62

Query: 81  HPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAK 122
           HPNVD+L+DR+LT N  P KPAE ++P+ E NRD  D   +FE+ K
Sbjct: 63  HPNVDMLIDRFLTSNFVPTKPAEAYLPLEELNRDLKDATAEFEIEK 108

[Close]
BLAST of CmoCh17G004580 vs. NCBI nr
Match: gi|449463992|ref|XP_004149713.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 56/107 (52.34%), Postives = 68/107 (63.55%), Query Frame = 1 

Query: 21  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPS-----LASLRTIRFFCFA 80
           K+ GRQKIEIKKL  KS + VTFSKRRA LF KA ELS L       L    T + + F 
Sbjct: 3   KSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTFG 62

Query: 81  HPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLVLKFEVAKK 123
           HPNVD L+DR+LT N  P KP E ++P+ E NRD  D+  +FE  K+
Sbjct: 63  HPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKR 109

The following BLAST results are available for this feature:
BLAST of CmoCh17G004580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL62_ARATH1.4e-0943.68Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1[more]
AGL61_ARATH2.3e-0940.37Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1[more]
AGL23_ARATH2.3e-0939.13Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1[more]
BLAST of CmoCh17G004580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LE01_CUCSA4.1e-2971.30Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1[more]
A0A0A0LLS2_CUCSA1.5e-1852.34Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1[more]
A0A0A0LW53_CUCSA1.8e-1649.07Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1[more]
A0A166E1J6_DAUCA1.3e-1144.44Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006798 PE=4 SV=1[more]
V7C848_PHAVU2.3e-1144.55Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G107400g PE=4 SV=1[more]
BLAST of CmoCh17G004580 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60440.17.7e-1143.68 AGAMOUS-like 62[more]
AT1G65360.11.3e-1039.13 AGAMOUS-like 23[more]
AT2G24840.11.3e-1040.37 AGAMOUS-like 61[more]
AT4G36590.12.5e-0946.15 MADS-box transcription factor family protein[more]
AT1G17310.13.2e-0946.84 MADS-box transcription factor family protein[more]
BLAST of CmoCh17G004580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133060|ref|XP_008466532.1|4.5e-2971.30PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
gi|700204855|gb|KGN59988.1|5.9e-2971.30hypothetical protein Csa_3G860240 [Cucumis sativus][more]
gi|778686644|ref|XP_004147877.2|5.9e-2971.30PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
gi|659115872|ref|XP_008457781.1|2.5e-1953.77PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
gi|449463992|ref|XP_004149713.1|2.1e-1852.34PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G004580.1CmoCh17G004580.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 25..45
score: 1.4E-9coord: 45..60
score: 1.
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 33..60
score: 1.
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 23..77
score: 6.
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 23..60
score: 15
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 24..91
score: 6.93
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 24..93
score: 1.1
NoneNo IPR availablePANTHERPTHR11945:SF164SUBFAMILY NOT NAMEDcoord: 24..93
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G004580CmaCh17G004860Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G004580Carg26711Silver-seed gourdcarcmoB0759
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G004580Cucumber (Gy14) v2cgybcmoB744
CmoCh17G004580Melon (DHL92) v3.6.1cmomedB351
CmoCh17G004580Silver-seed gourdcarcmoB0819
CmoCh17G004580Cucumber (Chinese Long) v3cmocucB0444
CmoCh17G004580Watermelon (97103) v2cmowmbB361
CmoCh17G004580Wax gourdcmowgoB0455
CmoCh17G004580Cucurbita moschata (Rifu)cmocmoB321
CmoCh17G004580Cucumber (Gy14) v1cgycmoB0292
CmoCh17G004580Cucurbita maxima (Rimu)cmacmoB898
CmoCh17G004580Wild cucumber (PI 183967)cmocpiB372
CmoCh17G004580Cucumber (Chinese Long) v2cmocuB369
CmoCh17G004580Melon (DHL92) v3.5.1cmomeB306
CmoCh17G004580Watermelon (Charleston Gray)cmowcgB325
CmoCh17G004580Watermelon (97103) v1cmowmB346
CmoCh17G004580Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G004580Cucurbita pepo (Zucchini)cmocpeB341
CmoCh17G004580Bottle gourd (USVL1VR-Ls)cmolsiB320