Carg26711 (gene) Silver-seed gourd

Overview
NameCarg26711
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionagamous-like MADS-box protein AGL62
LocationCucurbita_argyrosperma_scaffold_280 : 175421 .. 175746 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACTCTTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACAAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGTCGGTGAGCTTTCTGTGCTTTGCGGAGCAGAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGGTTTTTTTTGTTTTGGTCATCCGAATGTTGACGTGCTTTTGGATCGGTATTTGACTCGAAATTTGTCGCCGCTGAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAGTTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

mRNA sequence

AAAACTCTTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACAAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGTCGGTGAGCTTTCTGTGCTTTGCGGAGCAGAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAGTTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

Coding sequence (CDS)

AAAACTCTTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACAAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGTCGGTGAGCTTTCTGTGCTTTGCGGAGCAGAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAGTTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

Protein sequence

KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKPAENFVPVTEFNRDFADLVLKFEVAKK
Homology
[Close]
BLAST of Carg26711 vs. NCBI nr
Match: XP_022959356.1 (agamous-like MADS-box protein AGL62 [Cucurbita moschata])

HSP 1 Score: 125.9 bits (315), Expect = 6.1e-26
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0 

Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 15  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 74

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 75  HPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 121

[Close]
BLAST of Carg26711 vs. NCBI nr
Match: XP_023006252.1 (agamous-like MADS-box protein AGL62 [Cucurbita maxima])

HSP 1 Score: 125.9 bits (315), Expect = 6.1e-26
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0 

Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 15  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 74

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 75  HPNVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 121

[Close]
BLAST of Carg26711 vs. NCBI nr
Match: XP_023549141.1 (agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 6.1e-26
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0 

Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 3   KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 62

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 63  HPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 109

[Close]
BLAST of Carg26711 vs. NCBI nr
Match: XP_008466532.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 6.8e-25
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 70

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  HPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKK 117

[Close]
BLAST of Carg26711 vs. NCBI nr
Match: KGN59988.1 (hypothetical protein Csa_3G860240 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 8.8e-25
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFCFG 70

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  HPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKK 117

[Close]
BLAST of Carg26711 vs. TAIR10
Match: AT2G24840.1 (AGAMOUS-like 61)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKP 57
           +++GRQKI + K++K+S +QVTFSKRRA LFKK  EL  LCGAE+ II FSP  KP
Sbjct: 60  ESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKP 115

[Close]
BLAST of Carg26711 vs. TAIR10
Match: AT1G17310.1 (MADS-box transcription factor family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-11
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 2  TLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          T GRQKIEIKK+E+++ +QVTFSKRR  LFKK  ELSVL GA++A+I FS  D+
Sbjct: 46 TRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDR 99

[Close]
BLAST of Carg26711 vs. TAIR10
Match: AT5G60440.1 (AGAMOUS-like 62)

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-11
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 1  KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          K+ GRQKIE+ K++ +S+ QVTFSKRR+ LFKK  EL  LCGAEVAI+ FSP  K
Sbjct: 4  KSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRK 58

[Close]
BLAST of Carg26711 vs. TAIR10
Match: AT3G66656.1 (AGAMOUS-like 91)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-11
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 0 

Query: 3  LGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKP----AE 62
          +GR+KI+++K++  ++KQVTFSKRR  LFKK  EL+ LC AEV I+ FSP +KP      
Sbjct: 1  MGRRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKP 60

Query: 63 NFVPVTE-FNRDFAD 73
          NF  + E F  +F +
Sbjct: 61 NFDVIAERFKNEFEE 75

[Close]
BLAST of Carg26711 vs. TAIR10
Match: AT1G72350.1 (MADS-box transcription factor family protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-11
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 2  TLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          T GRQKIEIK++  ++ +QVTFSKRR+ LFKK  ELSVLCGA++ II FS  D+
Sbjct: 41 TKGRQKIEIKEIMLETRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDR 94

[Close]
BLAST of Carg26711 vs. Swiss-Prot
Match: sp|Q4PSU4|AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-11
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKP 57
           +++GRQKI + K++K+S +QVTFSKRRA LFKK  EL  LCGAE+ II FSP  KP
Sbjct: 60  ESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKP 115

[Close]
BLAST of Carg26711 vs. Swiss-Prot
Match: sp|Q9FKK2|AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 1  KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          K+ GRQKIE+ K++ +S+ QVTFSKRR+ LFKK  EL  LCGAEVAI+ FSP  K
Sbjct: 4  KSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRK 58

[Close]
BLAST of Carg26711 vs. Swiss-Prot
Match: sp|Q39295|AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus OX=3708 GN=AGL15 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.5e-10
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 3  LGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          +GR KIEIK++E  +S+QVTFSKRRA L KK  ELSVLC AEVA+I FS + K
Sbjct: 1  MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGK 53

[Close]
BLAST of Carg26711 vs. Swiss-Prot
Match: sp|Q38847|AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana OX=3702 GN=AGL15 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-09
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 3  LGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          +GR KIEIK++E  +S+QVTFSKRR+ L KK  ELSVLC AEVA+I FS + K
Sbjct: 1  MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGK 53

[Close]
BLAST of Carg26711 vs. Swiss-Prot
Match: sp|O80807|AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-09
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 1  KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          KTLGR+K+EI K+ K+S+ QVTFSKR+A LFKK  E   LC A++A+I FSP  K
Sbjct: 4  KTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGK 58

[Close]
BLAST of Carg26711 vs. TrEMBL
Match: tr|A0A1S3CRI8|A0A1S3CRI8_CUCME (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103503920 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-25
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 70

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  HPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKK 117

[Close]
BLAST of Carg26711 vs. TrEMBL
Match: tr|A0A0A0LE01|A0A0A0LE01_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.9e-25
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFCFG 70

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  HPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKK 117

[Close]
BLAST of Carg26711 vs. TrEMBL
Match: tr|A0A1S3CAA4|A0A1S3CAA4_CUCME (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103498214 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.4e-15
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFS--------- 60
           K+LGR+KIEIKKL+KKS++QVTFSKRRA LF K  ELS+LCGAE+A++ FS         
Sbjct: 3   KSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYTFG 62

Query: 61  -PN----------------DKPAENFVPVTEFNRDFADLVLKFEVAKK 83
            PN                 KPAE ++P+ E NRD +    +FE+ K+
Sbjct: 63  HPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKR 110

[Close]
BLAST of Carg26711 vs. TrEMBL
Match: tr|A0A2P5AYS3|A0A2P5AYS3_PARAD (MADS-box transcription factor OS=Parasponia andersonii OX=3476 GN=PanMADS17b PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 1  KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          +T GRQKIEIKKLEKKS+KQVTFSKRR+ LFKK GELS+LCG++VA+I FSPN K
Sbjct: 6  RTQGRQKIEIKKLEKKSNKQVTFSKRRSGLFKKAGELSILCGSDVAVIVFSPNGK 60

[Close]
BLAST of Carg26711 vs. TrEMBL
Match: tr|A0A2P5CGN5|A0A2P5CGN5_9ROSA (MADS-box transcription factor OS=Trema orientalis OX=63057 GN=TorMADS17 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 1  KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          +T GRQKIEIKKLEKKS+KQVTFSKRR+ LFKK GELS+LCG++VA+I FSPN K
Sbjct: 6  RTQGRQKIEIKKLEKKSNKQVTFSKRRSGLFKKAGELSILCGSDVAVIVFSPNGK 60

The following BLAST results are available for this feature:
BLAST of Carg26711 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022959356.16.1e-2668.22agamous-like MADS-box protein AGL62 [Cucurbita moschata][more]
XP_023006252.16.1e-2668.22agamous-like MADS-box protein AGL62 [Cucurbita maxima][more]
XP_023549141.16.1e-2668.22agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo][more]
XP_008466532.16.8e-2565.42PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
KGN59988.18.8e-2565.42hypothetical protein Csa_3G860240 [Cucumis sativus][more]
BLAST of Carg26711 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G24840.12.1e-1262.50AGAMOUS-like 61[more]
AT1G17310.11.0e-1164.81MADS-box transcription factor family protein[more]
AT5G60440.11.0e-1163.64AGAMOUS-like 62[more]
AT3G66656.12.3e-1148.00AGAMOUS-like 91[more]
AT1G72350.13.0e-1162.96MADS-box transcription factor family protein[more]
BLAST of Carg26711 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q4PSU4|AGL61_ARATH3.8e-1162.50Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=... [more]
sp|Q9FKK2|AGL62_ARATH1.9e-1063.64Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=... [more]
sp|Q39295|AGL15_BRANA5.5e-1066.04Agamous-like MADS-box protein AGL15 OS=Brassica napus OX=3708 GN=AGL15 PE=3 SV=1[more]
sp|Q38847|AGL15_ARATH1.2e-0964.15Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana OX=3702 GN=AGL15 PE=... [more]
sp|O80807|AGL23_ARATH1.6e-0960.00Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=... [more]
BLAST of Carg26711 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CRI8|A0A1S3CRI8_CUCME4.5e-2565.42agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103503920 PE=4... [more]
tr|A0A0A0LE01|A0A0A0LE01_CUCSA5.9e-2565.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE=4 SV=1[more]
tr|A0A1S3CAA4|A0A1S3CAA4_CUCME9.4e-1547.22agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103498214 PE=4... [more]
tr|A0A2P5AYS3|A0A2P5AYS3_PARAD1.0e-1378.18MADS-box transcription factor OS=Parasponia andersonii OX=3476 GN=PanMADS17b PE=... [more]
tr|A0A2P5CGN5|A0A2P5CGN5_9ROSA1.0e-1378.18MADS-box transcription factor OS=Trema orientalis OX=63057 GN=TorMADS17 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036879TF_MADSbox_sf
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26711-RACarg26711-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 25..40
score: 64.85
coord: 5..25
score: 51.12
coord: 40..61
score: 41.15
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 3..62
e-value: 5.9E-24
score: 95.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 13..56
e-value: 1.7E-20
score: 72.2
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 3..55
score: 22.203
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 15..76
e-value: 1.8E-17
score: 64.5
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 3..60
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..55
NoneNo IPR availablePANTHERPTHR11945:SF164SUBFAMILY NOT NAMEDcoord: 2..55