CmoCh17G002210 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G002210
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Photosystem 2 family protein
Location	Cmo_Chr17 : 1304261 .. 1305999 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGTTCCTTGCCCAAATCCCAATTCGCTCTGTACCAAGAGATTGACGCGAAGCCGCTCTCTGCATATCCACAAGTAAGAACTCGAAGTTCATTTCCAAACCCAAATTCATCCTCTTTCAATTCATTTGTAACATTTTTCTTCCACCGATTCTTCGCTGGTGCGCAACTTCGTACAATGCCGGCACAAAGTTAACGATTAGGTATGAACTAAGACGCCAGCTTCTTCTCCGTTTGCTTATGCAACACACTCCATTTCCGCACGGCTTCAGGTCGATGGATGCCTCATTTCTGTTTAATTTCTGGTTGAATTCACTATGGTTGTTTGTTTCCATCGCAAATTCGGCATTCAATTGACGAATAGAATCTACGGCAAGCACTTCGCGTAATGGGAAGCTTTGTTTCATGATTAACCTACGATTAAACAGAATAATGCGTTGTTTCCTGCAGGGGAATTGCTGGGGGATGAAGCAGGTGTATAGCGGCTCAACTTGGCTGGAGTGATAATCAAGAACGAAGATGACTGCATTTATTCAAGCGAAGATCTGCCCTGCAACTATTTCAACGTTGGATAGAATCTCAAGTGAAAATGGGCGTAAGTAACATTACCTGTAGCCATAAATTAAGCTCCTGTGTTGAATCTGCAGCGTTGTGAAATATAATTGCACTTTCATTTTCTCAGTTAACACATCTCATGCTAGGAAACAACTAACATTGGATAGTAATTTTATCCGGATAAATTGATTAGGGATCAAATTTGTTTATAAACTATAGAAATTAAGTTGTTGTAATTGTTACATGCTAAAACTTAAGGACTAAATCGTTACTTCTAGGAAAGTTTAGGGACTAAATAACAATCATACTTGCTTGAACCTGAAGGCATCTAAACACGAGTTTATTCTTGACTGTCTTTCATGCAACATAACAGATAAACTGCGATCCAGGTCTCAAGTTGTGCTACCATCTCAAGAACTTTGTAGGCGTGATTTATTGTGTAATGGCATGTCATTTGTTGCCTTTCTCACGTTCAACAATGCATTGACACCATTGTTGGCTCGGGCCGAAGAAATGCCAAATGACAAGGAGGAAGAGGAAAATGGAGTCATCGGGACGATCAAATCAATATTCGATCCAAATGAGAGAACCAAATCTGGGAAGGTATTGCCCAAGGCTTACCTGAAGTCAGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTAGAGACTATTTAGGCAATTGGTTGGGGCAACAAGCAGTTGTTCAAGAGGTATCTTATCAAGTGAAAAATAGACATTGTAGTTCATGATGATCGTAATGAATCTATAATAACATTTTCACTTACTCACATGCAGGAATCTTACGCTGTGCTAGAGAAAGCAATAAGGTCATTGGCAGGTTTTTATGCAAAGGCTGGGCCATCTGCACCATTGCCGGAAGATGTTAAATCTGATATACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAATTGATGAGCATTTGAGCTCTAGATTAATATTTTTTGAGGTATGTAGCATGTTAGGAATCACGACCGATCTCCACAATGGTATGATATTTTCCACTTTAAACAACCATAGATTTGCTTTCGATTTCTCTAAAAGACCTCATATTGATAGAAATGTATTCCTTACTTATAAATCCATGATCAACC

mRNA sequence

ATGCCGGTTCCTTGCCCAAATCCCAATTCGCTCTGTACCAAGAGATTGACGCGAAGCCGCTCTCTGCATATCCACAATTAACGATTAGGTATGAACTAAGACGCCAGCTTCTTCTCCGTTTGCTTATGCAACACACTCCATTTCCGCACGGCTTCAGGTCGATGGATGCCTCATTTCTGTTTAATTTCTGGTTGAATTCACTATGGTTGTTTGTTTCCATCGCAAATTCGGCATTCAATTGACGAATAGAATCTACGGCAAGCACTTCGCGTAATGGGAAGCTTTGTTTCATGATTAACCTACGATTAAACAGAATAATGCGTTGTTTCCTGCAGGGGAATTGCTGGGGGATGAAGCAGGTGTATAGCGGCTCAACTTGGCTGGAGTGATAATCAAGAACGAAGATGACTGCATTTATTCAAGCGAAGATCTGCCCTGCAACTATTTCAACGTTGGATAGAATCTCAAGTGAAAATGGGCATAAACTGCGATCCAGGTCTCAAGTTGTGCTACCATCTCAAGAACTTTGTAGGCGTGATTTATTGTGTAATGGCATGTCATTTGTTGCCTTTCTCACGTTCAACAATGCATTGACACCATTGTTGGCTCGGGCCGAAGAAATGCCAAATGACAAGGAGGAAGAGGAAAATGGAGTCATCGGGACGATCAAATCAATATTCGATCCAAATGAGAGAACCAAATCTGGGAAGGTATTGCCCAAGGCTTACCTGAAGTCAGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTAGAGACTATTTAGGCAATTGGTTGGGGCAACAAGCAGTTGTTCAAGAGGAATCTTACGCTGTGCTAGAGAAAGCAATAAGGTCATTGGCAGGTTTTTATGCAAAGGCTGGGCCATCTGCACCATTGCCGGAAGATGTTAAATCTGATATACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAATTGATGAGCATTTGAGCTCTAGATTAATATTTTTTGAGGTATGTAGCATGTTAGGAATCACGACCGATCTCCACAATGGTATGATATTTTCCACTTTAAACAACCATAGATTTGCTTTCGATTTCTCTAAAAGACCTCATATTGATAGAAATGTATTCCTTACTTATAAATCCATGATCAACC

Coding sequence (CDS)

ATGACTGCATTTATTCAAGCGAAGATCTGCCCTGCAACTATTTCAACGTTGGATAGAATCTCAAGTGAAAATGGGCATAAACTGCGATCCAGGTCTCAAGTTGTGCTACCATCTCAAGAACTTTGTAGGCGTGATTTATTGTGTAATGGCATGTCATTTGTTGCCTTTCTCACGTTCAACAATGCATTGACACCATTGTTGGCTCGGGCCGAAGAAATGCCAAATGACAAGGAGGAAGAGGAAAATGGAGTCATCGGGACGATCAAATCAATATTCGATCCAAATGAGAGAACCAAATCTGGGAAGGTATTGCCCAAGGCTTACCTGAAGTCAGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTAGAGACTATTTAGGCAATTGGTTGGGGCAACAAGCAGTTGTTCAAGAGGAATCTTACGCTGTGCTAGAGAAAGCAATAAGGTCATTGGCAGGTTTTTATGCAAAGGCTGGGCCATCTGCACCATTGCCGGAAGATGTTAAATCTGATATACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAA

Homology

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BLAST of CmoCh17G002210 vs. Swiss-Prot
Match: PB27B_ARATH (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.3e-48
Identity = 102/154 (66.23%), Postives = 124/154 (80.52%), Query Frame = 1


Query: 52  SFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKS 111
           SF+A + F+     L A+A E   +K +E  GV+G  K++FDPNERTKSGK LPKAYLKS
Sbjct: 53  SFMATIEFSG----LQAQASE---EKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKS 112

Query: 112 AREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIR 171
           AREVVKT+RESL+E+ KD AKFRR+ADAAKESIRDYL NW GQ+ V  EESY  LE  IR
Sbjct: 113 AREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIR 172

Query: 172 SLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL 206
           +LA FY+KAGPSAPLP++VK++IL+DL+KAEEFL
Sbjct: 173 ALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

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BLAST of CmoCh17G002210 vs. TrEMBL
Match: A0A0A0K400_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G234690 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.6e-86
Identity = 171/206 (83.01%), Postives = 182/206 (88.35%), Query Frame = 1


Query: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60
           M AFI AKICP TISTLDR + SE G KL SRS+VVLP QE+CRR L+ NGMS V FLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN LTP  A+AEEMPN+ EEE+NGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q VVQEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDIL+DLDK EE L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206

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BLAST of CmoCh17G002210 vs. TrEMBL
Match: D7T6Y0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03440 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 6.9e-61
Identity = 132/209 (63.16%), Postives = 159/209 (76.08%), Query Frame = 1


Query: 1   MTAFIQAKIC-PATISTLDRISSENGHKLRSRSQVVLPSQELC---RRDLLCNGMSFVAF 60
           M  F+  KIC P     +++ S  + +KL+SR  +VLPSQE     R  L+ +G S VA 
Sbjct: 1   MAVFLAMKICSPMIPKPIEKNSYIHEYKLKSRCHIVLPSQESPSSRRHVLVGSGASLVAI 60

Query: 61  LTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVV 120
           LTFN    PL   AE+  N +E++E GV+G IKS+FDPNE+ KSGKVLPKAYL SAREVV
Sbjct: 61  LTFNGGFLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIKSGKVLPKAYLNSAREVV 120

Query: 121 KTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGF 180
           KTLRESL+ED KD AKFRRTADAAKESIR+YL +W G+Q VV EESYA+LEKAIRSLA F
Sbjct: 121 KTLRESLKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVSEESYAMLEKAIRSLASF 180

Query: 181 YAKAGPSAPLPEDVKSDILNDLDKAEEFL 206
           Y+KAGPSA LPE+VKS+IL+DL+ AEEFL
Sbjct: 181 YSKAGPSAALPEEVKSEILDDLNTAEEFL 209

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BLAST of CmoCh17G002210 vs. TrEMBL
Match: A0A058ZUT2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01273 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-58
Identity = 127/206 (61.65%), Postives = 157/206 (76.21%), Query Frame = 1


Query: 5   IQAKICPATISTL-DRISSE-NGHKLRSRSQVVLPSQELC---RRDLLCNGMSFVAFLTF 64
           + AK+CP+TIS + ++I +    +KL+SR QVVLP +E     R  ++C G S  + +  
Sbjct: 15  VAAKLCPSTISGVPEKIPNFIREYKLQSRYQVVLPLEEPTFSRRNAIICIGSSLASVVPV 74

Query: 65  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 124
           +    PL   AEE    +E+E+ GVIG I+S+FDPNE+TKSGKVLPKAYLKSAREVVKTL
Sbjct: 75  SYVFAPLPVLAEENSASEEDEDKGVIGAIQSLFDPNEKTKSGKVLPKAYLKSAREVVKTL 134

Query: 125 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 184
           RESL+ED KD AKFRRTAD+AKESIR+YL NW GQ  V  EESY +LEKAIRSLA FY+K
Sbjct: 135 RESLKEDPKDNAKFRRTADSAKESIREYLSNWKGQLEVANEESYVMLEKAIRSLASFYSK 194

Query: 185 AGPSAPLPEDVKSDILNDLDKAEEFL 206
           AGPSAPLPE++KS+IL DL KA+EFL
Sbjct: 195 AGPSAPLPEEIKSEILADLSKADEFL 220

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BLAST of CmoCh17G002210 vs. TrEMBL
Match: A0A067G7K8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0266911mg PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 123/182 (67.58%), Postives = 143/182 (78.57%), Query Frame = 1


Query: 27  KLRSRSQVVLPSQELC---RRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENG 86
           KL SR+ VVLP  E     R  + C+  + VA LTFN  L PL  +AE+M N ++E+E G
Sbjct: 54  KLHSRTHVVLPPVEAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEG 113

Query: 87  VIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKES 146
           V+G IKS+FDPNE+TKSGKVLPKAYLKSARE+VKTLRESL+ED KD A FRR AD+AKES
Sbjct: 114 VVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKES 173

Query: 147 IRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEE 206
           IRDYL NW GQ+ V  EESY  LEKAIRSLA FY+KAGPSAPLP +VKS+ILNDLD AE+
Sbjct: 174 IRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 233

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BLAST of CmoCh17G002210 vs. TrEMBL
Match: A0A067GGX3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0266911mg PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 123/182 (67.58%), Postives = 143/182 (78.57%), Query Frame = 1


Query: 27  KLRSRSQVVLPSQELC---RRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENG 86
           KL SR+ VVLP  E     R  + C+  + VA LTFN  L PL  +AE+M N ++E+E G
Sbjct: 1   KLHSRTHVVLPPVEAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEG 60

Query: 87  VIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKES 146
           V+G IKS+FDPNE+TKSGKVLPKAYLKSARE+VKTLRESL+ED KD A FRR AD+AKES
Sbjct: 61  VVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKES 120

Query: 147 IRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEE 206
           IRDYL NW GQ+ V  EESY  LEKAIRSLA FY+KAGPSAPLP +VKS+ILNDLD AE+
Sbjct: 121 IRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 180

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BLAST of CmoCh17G002210 vs. TAIR10
Match: AT1G05385.1 (AT1G05385.1 photosystem II 11 kDa protein-related)

HSP 1 Score: 192.6 bits (488), Expect = 2.4e-49
Identity = 102/154 (66.23%), Postives = 124/154 (80.52%), Query Frame = 1


Query: 52  SFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKS 111
           SF+A + F+     L A+A E   +K +E  GV+G  K++FDPNERTKSGK LPKAYLKS
Sbjct: 53  SFMATIEFSG----LQAQASE---EKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKS 112

Query: 112 AREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIR 171
           AREVVKT+RESL+E+ KD AKFRR+ADAAKESIRDYL NW GQ+ V  EESY  LE  IR
Sbjct: 113 AREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIR 172

Query: 172 SLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL 206
           +LA FY+KAGPSAPLP++VK++IL+DL+KAEEFL
Sbjct: 173 ALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

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BLAST of CmoCh17G002210 vs. NCBI nr
Match: gi|659092617|ref|XP_008447146.1| (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo])

HSP 1 Score: 333.6 bits (854), Expect = 2.5e-88
Identity = 175/206 (84.95%), Postives = 183/206 (88.83%), Query Frame = 1


Query: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60
           M AFIQAKICP TISTLDR + SENG KL SRSQV LPSQE+CRR L+ NGMS V FLTF
Sbjct: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN LTP  A AEEMPN+ EEE+NGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q +VQEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDIL+DLDKAE  L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

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BLAST of CmoCh17G002210 vs. NCBI nr
Match: gi|778725910|ref|XP_011659022.1| (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 327.0 bits (837), Expect = 2.3e-86
Identity = 171/206 (83.01%), Postives = 182/206 (88.35%), Query Frame = 1


Query: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60
           M AFI AKICP TISTLDR + SE G KL SRS+VVLP QE+CRR L+ NGMS V FLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN LTP  A+AEEMPN+ EEE+NGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q VVQEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDIL+DLDK EE L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206

[Close]

BLAST of CmoCh17G002210 vs. NCBI nr
Match: gi|778725913|ref|XP_011659023.1| (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 5.7e-85
Identity = 168/205 (81.95%), Postives = 178/205 (86.83%), Query Frame = 1


Query: 1   MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFN 60
           M AFI AKICP TISTLDR       KL SRS+VVLP QE+CRR L+ NGMS V FLTFN
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFN 60

Query: 61  NALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLR 120
           N LTP  A+AEEMPN+ EEE+NGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTLR
Sbjct: 61  NGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLR 120

Query: 121 ESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAKA 180
           ESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q VVQEESY VLEKAIRSLAGFYAKA
Sbjct: 121 ESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKA 180

Query: 181 GPSAPLPEDVKSDILNDLDKAEEFL 206
           GPSAPLPE VKSDIL+DLDK EE L
Sbjct: 181 GPSAPLPEAVKSDILDDLDKVEESL 205

[Close]

BLAST of CmoCh17G002210 vs. NCBI nr
Match: gi|225432660|ref|XP_002282406.1| (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Vitis vinifera])

HSP 1 Score: 241.9 bits (616), Expect = 9.8e-61
Identity = 132/209 (63.16%), Postives = 159/209 (76.08%), Query Frame = 1


Query: 1   MTAFIQAKIC-PATISTLDRISSENGHKLRSRSQVVLPSQELC---RRDLLCNGMSFVAF 60
           M  F+  KIC P     +++ S  + +KL+SR  +VLPSQE     R  L+ +G S VA 
Sbjct: 1   MAVFLAMKICSPMIPKPIEKNSYIHEYKLKSRCHIVLPSQESPSSRRHVLVGSGASLVAI 60

Query: 61  LTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVV 120
           LTFN    PL   AE+  N +E++E GV+G IKS+FDPNE+ KSGKVLPKAYL SAREVV
Sbjct: 61  LTFNGGFLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIKSGKVLPKAYLNSAREVV 120

Query: 121 KTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGF 180
           KTLRESL+ED KD AKFRRTADAAKESIR+YL +W G+Q VV EESYA+LEKAIRSLA F
Sbjct: 121 KTLRESLKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVSEESYAMLEKAIRSLASF 180

Query: 181 YAKAGPSAPLPEDVKSDILNDLDKAEEFL 206
           Y+KAGPSA LPE+VKS+IL+DL+ AEEFL
Sbjct: 181 YSKAGPSAALPEEVKSEILDDLNTAEEFL 209

[Close]

BLAST of CmoCh17G002210 vs. NCBI nr
Match: gi|802581272|ref|XP_012069625.1| (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Jatropha curcas])

HSP 1 Score: 240.4 bits (612), Expect = 2.9e-60
Identity = 132/209 (63.16%), Postives = 158/209 (75.60%), Query Frame = 1


Query: 1   MTAFIQAKICPATI--STLDRISSENGHKLRSRSQVVLPSQEL--CRRDLLCNGMSFVAF 60
           +   + AKICP+    +++   +  N +KL+SRS+ VL SQ     RR +L    SF+A 
Sbjct: 3   VNVILAAKICPSVTCKTSMKSYNCNNDYKLQSRSKFVLLSQAAPPSRRHILVYSASFLAI 62

Query: 61  LTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVV 120
           L  N  LTP   RAE+ PN  E++ENGV+G IKS+FDPNE+TKSGK+LPK YLKSAREVV
Sbjct: 63  LNLNCILTPSPVRAEDEPN--EQKENGVVGAIKSLFDPNEKTKSGKLLPKNYLKSAREVV 122

Query: 121 KTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGF 180
           KTLRESLQED KD AKFRRTADAAKESIR+YLG+W GQ+ V +EESY  LEKAIR LA F
Sbjct: 123 KTLRESLQEDPKDIAKFRRTADAAKESIREYLGSWRGQEKVAREESYIELEKAIRCLANF 182

Query: 181 YAKAGPSAPLPEDVKSDILNDLDKAEEFL 206
           Y+KAGPSAPLP +VKS+ILNDL  AEEFL
Sbjct: 183 YSKAGPSAPLPGEVKSEILNDLSAAEEFL 209

The following BLAST results are available for this feature:

BLAST of CmoCh17G002210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PB27B_ARATH	4.3e-48	66.23	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]

BLAST of CmoCh17G002210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K400_CUCSA	1.6e-86	83.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G234690 PE=3 SV=1	[more]
D7T6Y0_VITVI	6.9e-61	63.16	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03440 PE=3 SV=...	[more]
A0A058ZUT2_EUCGR	1.1e-58	61.65	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01273 PE=3 SV=1	[more]
A0A067G7K8_CITSI	1.4e-58	67.58	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0266911mg PE=3 SV=1	[more]
A0A067GGX3_CITSI	1.4e-58	67.58	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0266911mg PE=3 ...	[more]

BLAST of CmoCh17G002210 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05385.1	2.4e-49	66.23	photosystem II 11 kDa protein-related	[more]

BLAST of CmoCh17G002210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092617\|ref\|XP_008447146.1\|	2.5e-88	84.95	PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti...	[more]
gi\|778725910\|ref\|XP_011659022.1\|	2.3e-86	83.01	PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti...	[more]
gi\|778725913\|ref\|XP_011659023.1\|	5.7e-85	81.95	PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti...	[more]
gi\|225432660\|ref\|XP_002282406.1\|	9.8e-61	63.16	PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti...	[more]
gi\|802581272\|ref\|XP_012069625.1\|	2.9e-60	63.16	PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025585	PSII_Pbs27

Vocabulary: **Biological Process**
Term	Definition
GO:0010207	photosystem II assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009543	chloroplast thylakoid lumen
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G002210.1	CmoCh17G002210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 79..205 score: 21
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 58..205 score: 2.5
None	No IPR available	unknown	Coil	Coil	coord: 109..129 scor
None	No IPR available	PANTHER	PTHR34041	FAMILY NOT NAMED	coord: 1..205 score: 3.1
None	No IPR available	PANTHER	PTHR34041:SF3	PHOTOSYSTEM II D1 PRECURSOR PROCESSING PROTEIN PSB27-H2, CHLOROPLASTIC	coord: 1..205 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G002210	Cucsa.239510	Cucumber (Gy14) v1	cgycmoB0665
CmoCh17G002210	CmaCh17G002340	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G002210	Cla009411	Watermelon (97103) v1	cmowmB353
CmoCh17G002210	Csa7G234690	Cucumber (Chinese Long) v2	cmocuB376
CmoCh17G002210	MELO3C012648	Melon (DHL92) v3.5.1	cmomeB320
CmoCh17G002210	ClCG06G006220	Watermelon (Charleston Gray)	cmowcgB325
CmoCh17G002210	CSPI07G10580	Wild cucumber (PI 183967)	cmocpiB379
CmoCh17G002210	Lsi09G013190	Bottle gourd (USVL1VR-Ls)	cmolsiB320
CmoCh17G002210	Cp4.1LG12g01880	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G002210	MELO3C012648.2	Melon (DHL92) v3.6.1	cmomedB367
CmoCh17G002210	CsaV3_7G022520	Cucumber (Chinese Long) v3	cmocucB0452
CmoCh17G002210	Cla97C06G115710	Watermelon (97103) v2	cmowmbB361
CmoCh17G002210	Bhi12G001521	Wax gourd	cmowgoB0453
CmoCh17G002210	Carg05417	Silver-seed gourd	carcmoB0097

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G002210	Wax gourd	cmowgoB0472
CmoCh17G002210	Wax gourd	cmowgoB0480
CmoCh17G002210	Wax gourd	cmowgoB0496
CmoCh17G002210	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh17G002210	Cucurbita moschata (Rifu)	cmocmoB298
CmoCh17G002210	Cucurbita moschata (Rifu)	cmocmoB308
CmoCh17G002210	Cucurbita moschata (Rifu)	cmocmoB310
CmoCh17G002210	Cucumber (Gy14) v1	cgycmoB0707
CmoCh17G002210	Cucurbita maxima (Rimu)	cmacmoB251
CmoCh17G002210	Cucurbita maxima (Rimu)	cmacmoB887
CmoCh17G002210	Wild cucumber (PI 183967)	cmocpiB352
CmoCh17G002210	Melon (DHL92) v3.5.1	cmomeB335
CmoCh17G002210	Watermelon (Charleston Gray)	cmowcgB305
CmoCh17G002210	Watermelon (Charleston Gray)	cmowcgB330
CmoCh17G002210	Watermelon (97103) v1	cmowmB327
CmoCh17G002210	Watermelon (97103) v1	cmowmB336
CmoCh17G002210	Cucurbita pepo (Zucchini)	cmocpeB351
CmoCh17G002210	Cucurbita pepo (Zucchini)	cmocpeB373
CmoCh17G002210	Bottle gourd (USVL1VR-Ls)	cmolsiB335
CmoCh17G002210	Bottle gourd (USVL1VR-Ls)	cmolsiB346
CmoCh17G002210	Cucumber (Gy14) v2	cgybcmoB317
CmoCh17G002210	Cucumber (Gy14) v2	cgybcmoB738
CmoCh17G002210	Cucumber (Gy14) v2	cgybcmoB906
CmoCh17G002210	Cucumber (Gy14) v2	cgybcmoB907
CmoCh17G002210	Melon (DHL92) v3.6.1	cmomedB364
CmoCh17G002210	Melon (DHL92) v3.6.1	cmomedB383
CmoCh17G002210	Melon (DHL92) v3.6.1	cmomedB385
CmoCh17G002210	Silver-seed gourd	carcmoB0446
CmoCh17G002210	Silver-seed gourd	carcmoB0824
CmoCh17G002210	Silver-seed gourd	carcmoB1019
CmoCh17G002210	Cucumber (Chinese Long) v3	cmocucB0420
CmoCh17G002210	Cucumber (Chinese Long) v3	cmocucB0436
CmoCh17G002210	Cucumber (Chinese Long) v3	cmocucB0454
CmoCh17G002210	Watermelon (97103) v2	cmowmbB366
CmoCh17G002210	Watermelon (97103) v2	cmowmbB375