CmaCh17G002340 (gene) Cucurbita maxima (Rimu)

NameCmaCh17G002340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem 2 family protein
LocationCma_Chr17 : 1189888 .. 1196294 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGGGTGGCTGAACACGGTTACTTTCCCAAATCCCAATTCGCTCTGTACCAAGAGATTGACGCGAAGCCGCTCTCTGCATATCCACAAGTAAGAACTCGAGGTTCATTTCCATACCCCAATTCATCCTCTTTCAATTCATTTGTAACATTTTTCTTCCCCCGATTCTTCTCTGGTTCGTAACTTCGTACAATGCCGGCACAAAGTTAAGGATTAGGTATGAACTAACACGCCAGCTTCTTCTCCGTTTGCTTATGCAACACACTCCATTTACGCACGGCTTCAGGTCGATGGATGCCTCAGTTCTGTTTAATTTCTGGTTGAATTCACGATGGTTGTTTGTTTCCATCGCAAATTCGGCATTCAATTGACGAATACAATCTACAGCAAGCACTTCGCGTCGTAGATTGTAATGGGAAGCTTTGTTTCATGATTAACCTAAGATTAAATAGAATAATGCGTTGTTTCCTGCAGGGGAATTGCTGGGGATGAAGCAGGTGTATAGCGGCTCAACTTGGCTGGAGTAATAATCAAGAACGAAGATGACTGCATTTATTCAAGCGAAGATCTGCCCTGCAACTATTTCAACATTTGATAGAATCTCAAGTGAAAATGGGCGTAAGTAACATTACCTGTAGCCATAAGTTAAGCTCCTGTGTCGGATCTGCAGCGTTGTCAAATATAATTGCACTTCCATTTTCCCAGTTAACACATCTCATGCTGGGAAACAACTAACATTGGGTAATAATTTTATCCTGATAAATTGATTAGGGGTCAAATTTGTTTATAAACTATAGAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTAAATTAAGTTGTAATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTTATATTTAGGTTTAGCAGAAGGCTATATAATGCCATTCTTTCTGCTGTTGAAATCATTTAAGTTTTCTGTGCAAATTGTATGCCTTGAGTAAATTTAGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAACAGTAATTGTTACATGCTAAAACTTAAGGGCTAAATCGTTACTTGTAGGAAAGTTTAGGGACTGAATAATAAGCATACTTGCTTGAACCTGAATGCATCCAAACACAAATTTGTTCTTGACTGTCTTTTATGCAACATAACAGATAAACTGCGATCCTGGTCTCAAGTTGTGCTACCATCTCAAGAACTTTGTAGGCGTAGTTTATTGTGTAATGGCATGTCATTGGTTGCCTTTCTCACATTCAACAATGCATTGACACCATGGTTGGCTCGGGCTGAAGAAACGCCAAATCACAAGGAGGAAGAGGAAAATGGAGTCATCGGGACGATCAAATCAATATTTGATCCAAATGAGAGAACCAAATCTGGGAAAGTATTGCCGAAGGCTTACCTGAAGTCAGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTAGAGACTATTTAGGCAATTGGTTGGGGCAACAGGCAGTTATTCAAGAGGTATATTATCAAGTGAAAAATAGACATTGTAGTTCATGATGATCGTAATGAATCTATAATAACATTTTCACTTACTCACATGCAGGAATCTTATGCTGTGCTAGAGAAGGCAATAAGGTCATTGGCAGGTTTTTATGCAAAGGCTGGGCCATCTGCACCATTGCCGGAAGATGTTAAATCTGATATACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAATTGATGAGCATTTGAGCTCTAGAATAATATTTTTGTTTTAACATAACATTTTGTAGGTATGTAGCTTCACGACTGATCTCCACAATGGTATGATATTGTCCCCTTTAAATAGTTTCCATGGATTTGCTTTTGATTTCTCCTAAAGGCCTTATATTGATAAAAGGCCTTATATTGATGGCCTTATATTGATAGAAATGTATTCCTTACTTTTAAATCTATGATCACCC

mRNA sequence

GTGGGGTGGCTGAACACGGTTACTTTCCCAAATCCCAATTCGCTCTGTACCAAGAGATTGACGCGAAGCCGCTCTCTGCATATCCACAAGTAAGAACTCGAGGTTCATTTCCATACCCCAATTCATCCTCTTTCAATTCATTTGTAACATTTTTCTTCCCCCGATTCTTCTCTGGTTCGTAACTTCGTACAATGCCGGCACAAAGTTAAGGATTAGGGGAATTGCTGGGGATGAAGCAGGTGTATAGCGGCTCAACTTGGCTGGAGTAATAATCAAGAACGAAGATGACTGCATTTATTCAAGCGAAGATCTGCCCTGCAACTATTTCAACATTTGATAGAATCTCAAGTGAAAATGGGCATAAACTGCGATCCTGGTCTCAAGTTGTGCTACCATCTCAAGAACTTTGTAGGCGTAGTTTATTGTGTAATGGCATGTCATTGGTTGCCTTTCTCACATTCAACAATGCATTGACACCATGGTTGGCTCGGGCTGAAGAAACGCCAAATCACAAGGAGGAAGAGGAAAATGGAGTCATCGGGACGATCAAATCAATATTTGATCCAAATGAGAGAACCAAATCTGGGAAAGTATTGCCGAAGGCTTACCTGAAGTCAGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTAGAGACTATTTAGGCAATTGGTTGGGGCAACAGGCAGTTATTCAAGAGGAATCTTATGCTGTGCTAGAGAAGGCAATAAGGTCATTGGCAGGTTTTTATGCAAAGGCTGGGCCATCTGCACCATTGCCGGAAGATGTTAAATCTGATATACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAATTGATGAGCATTTGAGCTCTAGAATAATATTTTTGTTTTAACATAACATTTTGTAGGTATGTAGCTTCACGACTGATCTCCACAATGGTATGATATTGTCCCCTTTAAATAGTTTCCATGGATTTGCTTTTGATTTCTCCTAAAGGCCTTATATTGATAAAAGGCCTTATATTGATGGCCTTATATTGATAGAAATGTATTCCTTACTTTTAAATCTATGATCACCC

Coding sequence (CDS)

ATGACTGCATTTATTCAAGCGAAGATCTGCCCTGCAACTATTTCAACATTTGATAGAATCTCAAGTGAAAATGGGCATAAACTGCGATCCTGGTCTCAAGTTGTGCTACCATCTCAAGAACTTTGTAGGCGTAGTTTATTGTGTAATGGCATGTCATTGGTTGCCTTTCTCACATTCAACAATGCATTGACACCATGGTTGGCTCGGGCTGAAGAAACGCCAAATCACAAGGAGGAAGAGGAAAATGGAGTCATCGGGACGATCAAATCAATATTTGATCCAAATGAGAGAACCAAATCTGGGAAAGTATTGCCGAAGGCTTACCTGAAGTCAGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTAGAGACTATTTAGGCAATTGGTTGGGGCAACAGGCAGTTATTCAAGAGGAATCTTATGCTGTGCTAGAGAAGGCAATAAGGTCATTGGCAGGTTTTTATGCAAAGGCTGGGCCATCTGCACCATTGCCGGAAGATGTTAAATCTGATATACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAA

Protein sequence

MTAFIQAKICPATISTFDRISSENGHKLRSWSQVVLPSQELCRRSLLCNGMSLVAFLTFNNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
BLAST of CmaCh17G002340 vs. Swiss-Prot
Match: PB27B_ARATH (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.7e-47
Identity = 94/134 (70.15%), Postives = 112/134 (83.58%), Query Frame = 1

Query: 72  ETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGA 131
           +    K +E  GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+ KD A
Sbjct: 66  QASEEKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNA 125

Query: 132 KFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAKAGPSAPLPEDVK 191
           KFRR+ADAAKESIRDYL NW GQ+ V  EESY  LE  IR+LA FY+KAGPSAPLP++VK
Sbjct: 126 KFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVK 185

Query: 192 SDILNDLDKAEEFL 206
           ++IL+DL+KAEEFL
Sbjct: 186 TEILDDLNKAEEFL 199

BLAST of CmaCh17G002340 vs. TrEMBL
Match: A0A0A0K400_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G234690 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 6.8e-85
Identity = 168/206 (81.55%), Postives = 180/206 (87.38%), Query Frame = 1

Query: 1   MTAFIQAKICPATISTFDR-ISSENGHKLRSWSQVVLPSQELCRRSLLCNGMSLVAFLTF 60
           M AFI AKICP TIST DR + SE G KL S S+VVLP QE+CRR L+ NGMSLV FLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN LTP  A+AEE PN+ EEE+NGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q V+QEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDIL+DLDK EE L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206

BLAST of CmaCh17G002340 vs. TrEMBL
Match: D7T6Y0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03440 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 9.9e-60
Identity = 130/209 (62.20%), Postives = 157/209 (75.12%), Query Frame = 1

Query: 1   MTAFIQAKIC-PATISTFDRISSENGHKLRSWSQVVLPSQELC---RRSLLCNGMSLVAF 60
           M  F+  KIC P      ++ S  + +KL+S   +VLPSQE     R  L+ +G SLVA 
Sbjct: 1   MAVFLAMKICSPMIPKPIEKNSYIHEYKLKSRCHIVLPSQESPSSRRHVLVGSGASLVAI 60

Query: 61  LTFNNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVV 120
           LTFN    P    AE+  N +E++E GV+G IKS+FDPNE+ KSGKVLPKAYL SAREVV
Sbjct: 61  LTFNGGFLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIKSGKVLPKAYLNSAREVV 120

Query: 121 KTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGF 180
           KTLRESL+ED KD AKFRRTADAAKESIR+YL +W G+Q V+ EESYA+LEKAIRSLA F
Sbjct: 121 KTLRESLKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVSEESYAMLEKAIRSLASF 180

Query: 181 YAKAGPSAPLPEDVKSDILNDLDKAEEFL 206
           Y+KAGPSA LPE+VKS+IL+DL+ AEEFL
Sbjct: 181 YSKAGPSAALPEEVKSEILDDLNTAEEFL 209

BLAST of CmaCh17G002340 vs. TrEMBL
Match: A0A058ZUT2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01273 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.4e-58
Identity = 126/206 (61.17%), Postives = 156/206 (75.73%), Query Frame = 1

Query: 5   IQAKICPATISTF-DRISSE-NGHKLRSWSQVVLPSQELC---RRSLLCNGMSLVAFLTF 64
           + AK+CP+TIS   ++I +    +KL+S  QVVLP +E     R +++C G SL + +  
Sbjct: 15  VAAKLCPSTISGVPEKIPNFIREYKLQSRYQVVLPLEEPTFSRRNAIICIGSSLASVVPV 74

Query: 65  NNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 124
           +    P    AEE    +E+E+ GVIG I+S+FDPNE+TKSGKVLPKAYLKSAREVVKTL
Sbjct: 75  SYVFAPLPVLAEENSASEEDEDKGVIGAIQSLFDPNEKTKSGKVLPKAYLKSAREVVKTL 134

Query: 125 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAK 184
           RESL+ED KD AKFRRTAD+AKESIR+YL NW GQ  V  EESY +LEKAIRSLA FY+K
Sbjct: 135 RESLKEDPKDNAKFRRTADSAKESIREYLSNWKGQLEVANEESYVMLEKAIRSLASFYSK 194

Query: 185 AGPSAPLPEDVKSDILNDLDKAEEFL 206
           AGPSAPLPE++KS+IL DL KA+EFL
Sbjct: 195 AGPSAPLPEEIKSEILADLSKADEFL 220

BLAST of CmaCh17G002340 vs. TrEMBL
Match: A0A067G7K8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0266911mg PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.1e-57
Identity = 126/212 (59.43%), Postives = 150/212 (70.75%), Query Frame = 1

Query: 4   FIQAKICPA-------TISTFDRISSENGHKLRSWSQVVLPSQELC---RRSLLCNGMSL 63
           F+ A +C +        +  F   S     KL S + VVLP  E     R  + C+  +L
Sbjct: 24  FVSASLCTSFLMLSFINLFCFFTASLWKADKLHSRTHVVLPPVEAASSRRHVISCSSTAL 83

Query: 64  VAFLTFNNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAR 123
           VA LTFN  L P   +AE+  N ++E+E GV+G IKS+FDPNE+TKSGKVLPKAYLKSAR
Sbjct: 84  VAILTFNCGLAPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSAR 143

Query: 124 EVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSL 183
           E+VKTLRESL+ED KD A FRR AD+AKESIRDYL NW GQ+ V  EESY  LEKAIRSL
Sbjct: 144 ELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSL 203

Query: 184 AGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL 206
           A FY+KAGPSAPLP +VKS+ILNDLD AE+FL
Sbjct: 204 ASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 235

BLAST of CmaCh17G002340 vs. TrEMBL
Match: A5B749_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022066 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.9e-57
Identity = 131/230 (56.96%), Postives = 158/230 (68.70%), Query Frame = 1

Query: 1   MTAFIQAKICPATI-STFDRISSENGHKLRSWSQVVLPSQELC---RRSLLCNGMSLVAF 60
           M  F+  KICP  I    ++ S  + +KL+S   +VLPSQE     R  L+ +G SLVA 
Sbjct: 1   MAVFLAMKICPPMIPKPIEKNSYIHEYKLKSRCHIVLPSQESPSSRRHVLVGSGASLVAI 60

Query: 61  LTFNNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVV 120
           LTFN    P    AE+  N +E++E GV+G IKS+FDPNE+ KSGKVLPKAYL SAREVV
Sbjct: 61  LTFNGGFLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIKSGKVLPKAYLNSAREVV 120

Query: 121 KTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQE---------------- 180
           KTLRESL+ED KD AKFRRTADAAKESIR+YL +W G+Q V+ E                
Sbjct: 121 KTLRESLKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVSEVCILQKHFWFLRWIPV 180

Query: 181 -----ESYAVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL 206
                ESYA+LEKAIRSLA FY+KAGPSA LPE+VKS+IL+DL+ AEEFL
Sbjct: 181 VTVXHESYAMLEKAIRSLASFYSKAGPSAALPEEVKSEILDDLNTAEEFL 230

BLAST of CmaCh17G002340 vs. TAIR10
Match: AT1G05385.1 (AT1G05385.1 photosystem II 11 kDa protein-related)

HSP 1 Score: 189.1 bits (479), Expect = 2.7e-48
Identity = 94/134 (70.15%), Postives = 112/134 (83.58%), Query Frame = 1

Query: 72  ETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGA 131
           +    K +E  GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+ KD A
Sbjct: 66  QASEEKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNA 125

Query: 132 KFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAKAGPSAPLPEDVK 191
           KFRR+ADAAKESIRDYL NW GQ+ V  EESY  LE  IR+LA FY+KAGPSAPLP++VK
Sbjct: 126 KFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVK 185

Query: 192 SDILNDLDKAEEFL 206
           ++IL+DL+KAEEFL
Sbjct: 186 TEILDDLNKAEEFL 199

BLAST of CmaCh17G002340 vs. NCBI nr
Match: gi|659092617|ref|XP_008447146.1| (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 1.0e-86
Identity = 172/206 (83.50%), Postives = 181/206 (87.86%), Query Frame = 1

Query: 1   MTAFIQAKICPATISTFDR-ISSENGHKLRSWSQVVLPSQELCRRSLLCNGMSLVAFLTF 60
           M AFIQAKICP TIST DR + SENG KL S SQV LPSQE+CRR L+ NGMSLV FLTF
Sbjct: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN LTP  A AEE PN+ EEE+NGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q ++QEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDIL+DLDKAE  L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

BLAST of CmaCh17G002340 vs. NCBI nr
Match: gi|778725910|ref|XP_011659022.1| (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 321.6 bits (823), Expect = 9.8e-85
Identity = 168/206 (81.55%), Postives = 180/206 (87.38%), Query Frame = 1

Query: 1   MTAFIQAKICPATISTFDR-ISSENGHKLRSWSQVVLPSQELCRRSLLCNGMSLVAFLTF 60
           M AFI AKICP TIST DR + SE G KL S S+VVLP QE+CRR L+ NGMSLV FLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN LTP  A+AEE PN+ EEE+NGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q V+QEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 206
           AGPSAPLPE VKSDIL+DLDK EE L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206

BLAST of CmaCh17G002340 vs. NCBI nr
Match: gi|778725913|ref|XP_011659023.1| (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 2.4e-83
Identity = 165/205 (80.49%), Postives = 176/205 (85.85%), Query Frame = 1

Query: 1   MTAFIQAKICPATISTFDRISSENGHKLRSWSQVVLPSQELCRRSLLCNGMSLVAFLTFN 60
           M AFI AKICP TIST DR       KL S S+VVLP QE+CRR L+ NGMSLV FLTFN
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFN 60

Query: 61  NALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLR 120
           N LTP  A+AEE PN+ EEE+NGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTLR
Sbjct: 61  NGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLR 120

Query: 121 ESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGFYAKA 180
           ESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q V+QEESY VLEKAIRSLAGFYAKA
Sbjct: 121 ESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKA 180

Query: 181 GPSAPLPEDVKSDILNDLDKAEEFL 206
           GPSAPLPE VKSDIL+DLDK EE L
Sbjct: 181 GPSAPLPEAVKSDILDDLDKVEESL 205

BLAST of CmaCh17G002340 vs. NCBI nr
Match: gi|225432660|ref|XP_002282406.1| (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Vitis vinifera])

HSP 1 Score: 238.0 bits (606), Expect = 1.4e-59
Identity = 130/209 (62.20%), Postives = 157/209 (75.12%), Query Frame = 1

Query: 1   MTAFIQAKIC-PATISTFDRISSENGHKLRSWSQVVLPSQELC---RRSLLCNGMSLVAF 60
           M  F+  KIC P      ++ S  + +KL+S   +VLPSQE     R  L+ +G SLVA 
Sbjct: 1   MAVFLAMKICSPMIPKPIEKNSYIHEYKLKSRCHIVLPSQESPSSRRHVLVGSGASLVAI 60

Query: 61  LTFNNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVV 120
           LTFN    P    AE+  N +E++E GV+G IKS+FDPNE+ KSGKVLPKAYL SAREVV
Sbjct: 61  LTFNGGFLPLPVWAEDESNGQEDDEKGVVGAIKSLFDPNEKIKSGKVLPKAYLNSAREVV 120

Query: 121 KTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGF 180
           KTLRESL+ED KD AKFRRTADAAKESIR+YL +W G+Q V+ EESYA+LEKAIRSLA F
Sbjct: 121 KTLRESLKEDPKDIAKFRRTADAAKESIREYLSSWRGKQTVVSEESYAMLEKAIRSLASF 180

Query: 181 YAKAGPSAPLPEDVKSDILNDLDKAEEFL 206
           Y+KAGPSA LPE+VKS+IL+DL+ AEEFL
Sbjct: 181 YSKAGPSAALPEEVKSEILDDLNTAEEFL 209

BLAST of CmaCh17G002340 vs. NCBI nr
Match: gi|802581272|ref|XP_012069625.1| (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Jatropha curcas])

HSP 1 Score: 234.6 bits (597), Expect = 1.6e-58
Identity = 130/209 (62.20%), Postives = 155/209 (74.16%), Query Frame = 1

Query: 1   MTAFIQAKICPATI--STFDRISSENGHKLRSWSQVVLPSQEL--CRRSLLCNGMSLVAF 60
           +   + AKICP+    ++    +  N +KL+S S+ VL SQ     RR +L    S +A 
Sbjct: 3   VNVILAAKICPSVTCKTSMKSYNCNNDYKLQSRSKFVLLSQAAPPSRRHILVYSASFLAI 62

Query: 61  LTFNNALTPWLARAEETPNHKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVV 120
           L  N  LTP   RAE+ PN  E++ENGV+G IKS+FDPNE+TKSGK+LPK YLKSAREVV
Sbjct: 63  LNLNCILTPSPVRAEDEPN--EQKENGVVGAIKSLFDPNEKTKSGKLLPKNYLKSAREVV 122

Query: 121 KTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVIQEESYAVLEKAIRSLAGF 180
           KTLRESLQED KD AKFRRTADAAKESIR+YLG+W GQ+ V +EESY  LEKAIR LA F
Sbjct: 123 KTLRESLQEDPKDIAKFRRTADAAKESIREYLGSWRGQEKVAREESYIELEKAIRCLANF 182

Query: 181 YAKAGPSAPLPEDVKSDILNDLDKAEEFL 206
           Y+KAGPSAPLP +VKS+ILNDL  AEEFL
Sbjct: 183 YSKAGPSAPLPGEVKSEILNDLSAAEEFL 209

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PB27B_ARATH4.7e-4770.15Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid... [more]
Match NameE-valueIdentityDescription
A0A0A0K400_CUCSA6.8e-8581.55Uncharacterized protein OS=Cucumis sativus GN=Csa_7G234690 PE=3 SV=1[more]
D7T6Y0_VITVI9.9e-6062.20Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03440 PE=3 SV=... [more]
A0A058ZUT2_EUCGR5.4e-5861.17Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01273 PE=3 SV=1[more]
A0A067G7K8_CITSI2.1e-5759.43Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0266911mg PE=3 SV=1[more]
A5B749_VITVI7.9e-5756.96Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022066 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G05385.12.7e-4870.15 photosystem II 11 kDa protein-related[more]
Match NameE-valueIdentityDescription
gi|659092617|ref|XP_008447146.1|1.0e-8683.50PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti... [more]
gi|778725910|ref|XP_011659022.1|9.8e-8581.55PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti... [more]
gi|778725913|ref|XP_011659023.1|2.4e-8380.49PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti... [more]
gi|225432660|ref|XP_002282406.1|1.4e-5962.20PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti... [more]
gi|802581272|ref|XP_012069625.1|1.6e-5862.20PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025585PSII_Pbs27
Vocabulary: Biological Process
TermDefinition
GO:0010207photosystem II assembly
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006098 pentose-phosphate shunt
cellular_component GO:0005575 cellular_component
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G002340.1CmaCh17G002340.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 79..205
score: 21
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 44..205
score: 5.1
NoneNo IPR availableunknownCoilCoilcoord: 109..129
scor
NoneNo IPR availablePANTHERPTHR34041FAMILY NOT NAMEDcoord: 1..205
score: 4.6
NoneNo IPR availablePANTHERPTHR34041:SF3PHOTOSYSTEM II D1 PRECURSOR PROCESSING PROTEIN PSB27-H2, CHLOROPLASTICcoord: 1..205
score: 4.6

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G002340Silver-seed gourdcarcmaB0455
CmaCh17G002340Silver-seed gourdcarcmaB1047
CmaCh17G002340Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G002340Cucumber (Chinese Long) v3cmacucB0444
CmaCh17G002340Cucumber (Chinese Long) v3cmacucB0461
CmaCh17G002340Watermelon (97103) v2cmawmbB366
CmaCh17G002340Watermelon (97103) v2cmawmbB383
CmaCh17G002340Watermelon (97103) v2cmawmbB392
CmaCh17G002340Wax gourdcmawgoB0473
CmaCh17G002340Wax gourdcmawgoB0480
CmaCh17G002340Wax gourdcmawgoB0497
CmaCh17G002340Cucurbita maxima (Rimu)cmacmaB249
CmaCh17G002340Cucurbita maxima (Rimu)cmacmaB373
CmaCh17G002340Cucurbita maxima (Rimu)cmacmaB361
CmaCh17G002340Cucurbita maxima (Rimu)cmacmaB369
CmaCh17G002340Cucumber (Gy14) v1cgycmaB0714
CmaCh17G002340Cucurbita moschata (Rifu)cmacmoB350
CmaCh17G002340Cucurbita moschata (Rifu)cmacmoB362
CmaCh17G002340Cucurbita moschata (Rifu)cmacmoB365
CmaCh17G002340Cucurbita moschata (Rifu)cmacmoB373
CmaCh17G002340Wild cucumber (PI 183967)cmacpiB359
CmaCh17G002340Cucumber (Chinese Long) v2cmacuB355
CmaCh17G002340Melon (DHL92) v3.5.1cmameB342
CmaCh17G002340Watermelon (Charleston Gray)cmawcgB312
CmaCh17G002340Watermelon (Charleston Gray)cmawcgB334
CmaCh17G002340Watermelon (97103) v1cmawmB333
CmaCh17G002340Watermelon (97103) v1cmawmB341
CmaCh17G002340Watermelon (97103) v1cmawmB344
CmaCh17G002340Cucurbita pepo (Zucchini)cmacpeB373
CmaCh17G002340Cucurbita pepo (Zucchini)cmacpeB388
CmaCh17G002340Bottle gourd (USVL1VR-Ls)cmalsiB347
CmaCh17G002340Bottle gourd (USVL1VR-Ls)cmalsiB357
CmaCh17G002340Cucumber (Gy14) v2cgybcmaB345
CmaCh17G002340Cucumber (Gy14) v2cgybcmaB755
CmaCh17G002340Cucumber (Gy14) v2cgybcmaB924
CmaCh17G002340Melon (DHL92) v3.6.1cmamedB378
CmaCh17G002340Melon (DHL92) v3.6.1cmamedB396
CmaCh17G002340Melon (DHL92) v3.6.1cmamedB398