CmoCh16G011540 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G011540
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionATP-dependent Clp protease proteolytic subunit
LocationCmo_Chr16 : 8231426 .. 8233922 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTCGCCGAGGTCGCCGCCACTGCCTCCAGCTTCGCGCTTTCCAACAGAATATCGCCATTGATAATCGAACCGGACCTTGTCATTGTCCTCCTCCTCTCTCAGAACGGCGCAGCTTTCCACTAATTTTCTCATCCTTTTCGCCGGTGGCAGCGTCTTCGGGGACTTTTCCGGCATGAAGCTCCGGCCATCTTTGCTTAATCCGGATTATTCCTGTGAATCCAAGGGCAAAAGGTGCGTTGTTACTATGGTAAATGCCTGAATTTTTGTTCTTCCCGTGCTATTGGGATATTGGTTTTGAAGTTTTGTTTCTTCTCTCTTCCGTCTGTTCGAGCTAATTCGAGCTAATTTAGGGAATGATCAAAGAATACTCCCTCCATTGTTATTAGTTTTTAAAACAAAGCTATGAGAGCTTACGCGGACAATATCATACCATTACGGAGAGTTGTGTTTATTTAACATGGTATCAAAGCTATGCCCTAAATTAGTCGTGTCAATAGAATTCTCAAATGTCGAACAAAGGACTCCAAAAGAAAAAGGCATCCGAGACTCCTCGAAGGCATAGTAAAAAATGACTAAGACTCCAAAAGAAAACGAGTCGAGCCTCGATTAAGGGGAGACGTACTTTGTTCAAAAGGAGGTGTTGAATGAAAGTCCCACCTCGGCTAATTTAGGGAATGATCATGGGTTTATAATAAATGAATACTCTTTCCATTGATAAGAGGTCTTTTTGGGGAAGCCCAACGCAAAACCATGAGAGCTTATGCTCAAAGTAGACAATATCATACCATTGGGAGAATTGTGTTCATTTAACATTTTCAACTACTTTGGTTAATTAAATTTTAGTATGAGTCCTCTTCGGGGAAAAAGTGTGATATTAATTTGAAATTTTGCTGCTCATTGTTTGTGCGAAGAATATTCGATTTCTTTCTTTCTGTCCACCGATTTTAAAAGACAGCCATGATTAGATTTTTCCATAGAGTAGGGCTTTTGCATTCTTGAAAGGGCGGAACGTTAAAGCCATATCCAATAGATCATTTACCTCCCAAGGAATGAGAGATGTCGTCCGAATATATTTTGGAGCAACTTTCTCCAGATTTGGCATCTTATTTATACAAGAATCGAATGGTTTACTTAGGCATTACTCTTGTTCGTTCTGTCATGGAGTTGATACTTGCTGAATTTCTTTACCTTCAGTACGAGGATGAACTTTACATTAACCCCAAAGGATAACAAAGGTTAACCATGTCTTTAGAATCTTCGTTGTTTTAATGTGGATTGTGAGATCCTACATTGATTTGAGAGAGCAACGAGTGTCGGCAAGGACGTTGGGTCTCGAAGGGGGTAGATTGTGAAATCTCACATCAATTGGAGAGGGGAACAAGTGCCAACAAGGACGTTGGGTGACACAAGGGCCTTGTGGCCTAAGTGAGCTACCCTGTGGCACATACGTGTATCACGGTGAGGGCGAGCGTGCCGAGACGAGTGTCTCGGGCGACTTCTTTTGAAATGGGTTTTTGAAGGACAGTACCGGACGGCACGGGTGTGCCGGTATCGCGCCCTAGCCCACGAGTTGGAGGTTGCTACATACACCTGCTATTCGGTACGGTATCCGTAAATGACTCGGCATGGGCACGGGAGGGCCTATGCCTCGATAGAACCCGAATGGATGGATGTTCGGGAAGCCCCGATGAGATGAACGACACGCGAGCCCATTCTCGATGGCATGACCGAACGAGTTATGATGGCCGATGACATCCCGAGACTCGGGATGGCGTCAAGACATATGGACCTCGTCGATGGGGATCGAGATGGCAAGATGAGATGCGACGTTGTATTGAGAGACCTTGGCCAGAGTAGAGGCAAGGTCAGGCCGAATGAGTTGGCCTAGCGTAGAGGCAAGTCGGATGTGTCGCAGATGATTGAACATACACGCACAGGCGGCGTGTGTGGTTGAACAAGTTTGGATTCCGCACAAGCGATGTTCGATTGGCGAAGACAAACCTCGCCTAAGGTCCGACGAAGCCACAAAGTCGGGGCGAAAAATATATATGGGGCTTAATTCCCCTTAAGGCTAGTCGTGAACGTGTATAGATCACGACGCCGCACGGTCAAGAATGTAGGACCGTGACATTGGACTCCAAAGGAGGGTGGATTGTGAGATCGCACATCGGTTGGAGAGGGGAACAAAACATTATTGGTAAGGGTGTGGAAACCTCTTCCTAGCAGACGCGTTTTAAAATCCTCAGAGGAAGCCCAAAACTGAAAGTGCAAAGAGTGACAATATCTGCTAGTAGTGAGCTTAGGTCGTTACATCTGTTCTTTAGAATCCTGGTAGACATGTTGAGGACCCTTTGTTTACTGTTCATCACTTAGTATTCATTTGCACTGCAGATATGTTAAGCCTTCTATATTCACGTTATGCATTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAGCCGTTCTGCATAG

mRNA sequence

ATGGAGGTCGCCGAGGTCGCCGCCACTGCCTCCAGCTTCGCGCTTTCCAACAGAATATCGCCATTGATAATCGAACCGGACCTTCTTTCCACTAATTTTCTCATCCTTTTCGCCGGTGGCAGCGTCTTCGGGGACTTTTCCGGCATGAAGCTCCGGCCATCTTTGCTTAATCCGGATTATTCCTGTGAATCCAAGGGCAAAAGATATGTTAAGCCTTCTATATTCACGTTATGCATTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAGCCGTTCTGCATAG

Coding sequence (CDS)

ATGGAGGTCGCCGAGGTCGCCGCCACTGCCTCCAGCTTCGCGCTTTCCAACAGAATATCGCCATTGATAATCGAACCGGACCTTCTTTCCACTAATTTTCTCATCCTTTTCGCCGGTGGCAGCGTCTTCGGGGACTTTTCCGGCATGAAGCTCCGGCCATCTTTGCTTAATCCGGATTATTCCTGTGAATCCAAGGGCAAAAGATATGTTAAGCCTTCTATATTCACGTTATGCATTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAGCCGTTCTGCATAG
BLAST of CmoCh16G011540 vs. Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-08
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1

Query: 69  YVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA 101
           YVKP IFTLC+GNAWGEAALLL AGA+G+RSA
Sbjct: 177 YVKPPIFTLCVGNAWGEAALLLTAGAKGNRSA 208

BLAST of CmoCh16G011540 vs. TrEMBL
Match: A0A0D2U864_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_008G231300 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-15
Identity = 69/143 (48.25%), Postives = 73/143 (51.05%), Query Frame = 1

Query: 1   MEVAEVAATASSFALSNRI-----SPLIIEPDL-------------LSTNFLILFAG-GS 60
           MEVA   A ASSFAL  R+     S  I  P               LSTNFL  F   GS
Sbjct: 1   MEVA--TAAASSFALHTRMLSPPTSARIANPTRTLTSPPSTSLRASLSTNFLSPFPTVGS 60

Query: 61  VFGDFSGMKLRPSLLNPDYSCESKGKR------------------------YVKPSIFTL 101
           V GDFSG+KLRP  L P   C SK KR                        YVKP IFTL
Sbjct: 61  VSGDFSGLKLRPDSLYPASLCRSKPKRGVVTMGGEKLGYETEAFAIYDVMGYVKPPIFTL 120

BLAST of CmoCh16G011540 vs. TrEMBL
Match: A0A0A0L232_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G017170 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 1

Query: 5  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDF 64
          EVA TASSFAL+ RISPLI                  +    LSTNFLI FAGGSV G+F
Sbjct: 2  EVATTASSFALTKRISPLITSSHNGKSNRTLSMSSSSVRMAPLSTNFLIPFAGGSVSGEF 61

Query: 65 SGMKLRPSLLNPDYSCESKGKRYVKPSIFTLCIGNAW 84
          SG+KLRPS LNP+YS  SKGKR V   +     G+AW
Sbjct: 62 SGVKLRPSSLNPNYSPGSKGKRGVVTMVIPFARGSAW 98

BLAST of CmoCh16G011540 vs. TrEMBL
Match: A0A067F0M4_CITSI (ATP-dependent Clp protease proteolytic subunit OS=Citrus sinensis GN=CISIN_1g022551mg PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-12
Identity = 60/151 (39.74%), Postives = 75/151 (49.67%), Query Frame = 1

Query: 1   MEVAEVAATASSFALSNRI-------SPLIIEPDL-LSTNFLILFAGGSVFGDFSGMKLR 60
           MEVA   A+A  F L  R+       SP  +  +  LST+F+  FA GSV  DFSG++LR
Sbjct: 1   MEVA--TASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLR 60

Query: 61  PSLLNPDYSCESK----------------------------GKRY--------------- 101
           P  LNPD  C+SK                            G++                
Sbjct: 61  PDCLNPDSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY 120

BLAST of CmoCh16G011540 vs. TrEMBL
Match: A0A118JS48_CYNCS (ATP-dependent Clp protease proteolytic subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_026293 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 68  RYVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA 101
           RYVKP IFTLC+GNAWGEAALLLAAGA+G+RSA
Sbjct: 177 RYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSA 209

BLAST of CmoCh16G011540 vs. TrEMBL
Match: D0EX73_9ROSA (ATP-dependent Clp protease proteolytic subunit OS=Eriobotrya japonica PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 68  RYVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA 101
           RYVKP IFTLC+GNAWGEAALLLAAGA+G+RSA
Sbjct: 175 RYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSA 207

BLAST of CmoCh16G011540 vs. TAIR10
Match: AT4G17040.1 (AT4G17040.1 CLP protease R subunit 4)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-09
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1

Query: 69  YVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA 101
           YVKP IFTLC+GNAWGEAALLL AGA+G+RSA
Sbjct: 177 YVKPPIFTLCVGNAWGEAALLLTAGAKGNRSA 208

BLAST of CmoCh16G011540 vs. NCBI nr
Match: gi|763784704|gb|KJB51775.1| (hypothetical protein B456_008G231300 [Gossypium raimondii])

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-15
Identity = 69/143 (48.25%), Postives = 73/143 (51.05%), Query Frame = 1

Query: 1   MEVAEVAATASSFALSNRI-----SPLIIEPDL-------------LSTNFLILFAG-GS 60
           MEVA   A ASSFAL  R+     S  I  P               LSTNFL  F   GS
Sbjct: 1   MEVA--TAAASSFALHTRMLSPPTSARIANPTRTLTSPPSTSLRASLSTNFLSPFPTVGS 60

Query: 61  VFGDFSGMKLRPSLLNPDYSCESKGKR------------------------YVKPSIFTL 101
           V GDFSG+KLRP  L P   C SK KR                        YVKP IFTL
Sbjct: 61  VSGDFSGLKLRPDSLYPASLCRSKPKRGVVTMGGEKLGYETEAFAIYDVMGYVKPPIFTL 120

BLAST of CmoCh16G011540 vs. NCBI nr
Match: gi|449459004|ref|XP_004147236.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 1

Query: 5  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDF 64
          EVA TASSFAL+ RISPLI                  +    LSTNFLI FAGGSV G+F
Sbjct: 2  EVATTASSFALTKRISPLITSSHNGKSNRTLSMSSSSVRMAPLSTNFLIPFAGGSVSGEF 61

Query: 65 SGMKLRPSLLNPDYSCESKGKRYVKPSIFTLCIGNAW 84
          SG+KLRPS LNP+YS  SKGKR V   +     G+AW
Sbjct: 62 SGVKLRPSSLNPNYSPGSKGKRGVVTMVIPFARGSAW 98

BLAST of CmoCh16G011540 vs. NCBI nr
Match: gi|641838105|gb|KDO57052.1| (hypothetical protein CISIN_1g022551mg [Citrus sinensis])

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 60/151 (39.74%), Postives = 75/151 (49.67%), Query Frame = 1

Query: 1   MEVAEVAATASSFALSNRI-------SPLIIEPDL-LSTNFLILFAGGSVFGDFSGMKLR 60
           MEVA   A+A  F L  R+       SP  +  +  LST+F+  FA GSV  DFSG++LR
Sbjct: 1   MEVA--TASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLR 60

Query: 61  PSLLNPDYSCESK----------------------------GKRY--------------- 101
           P  LNPD  C+SK                            G++                
Sbjct: 61  PDCLNPDSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY 120

BLAST of CmoCh16G011540 vs. NCBI nr
Match: gi|659095808|ref|XP_008448778.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 5.4e-12
Identity = 49/97 (50.52%), Postives = 55/97 (56.70%), Query Frame = 1

Query: 5  EVAATASSFALSNRISPLIIEPDL------------------LSTNFLILFAGGSVFGDF 64
          EVA TASSFAL+ RISPL    +                   LSTNFLI FAGGSV GDF
Sbjct: 2  EVATTASSFALTKRISPLFASSNYGKSNRTLSLSSSSVRTAPLSTNFLIPFAGGSVSGDF 61

Query: 65 SGMKLRPSLLNPDYSCESKGKRYVKPSIFTLCIGNAW 84
          SG+KLRP  LNP+    SKGKR V   +     G+AW
Sbjct: 62 SGVKLRPYSLNPNCFPGSKGKRGVVTMVIPFSRGSAW 98

BLAST of CmoCh16G011540 vs. NCBI nr
Match: gi|976900425|gb|KVH88627.1| (ClpP [Cynara cardunculus var. scolymus])

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-07
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 68  RYVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA 101
           RYVKP IFTLC+GNAWGEAALLLAAGA+G+RSA
Sbjct: 177 RYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSA 209

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CLPR4_ARATH2.8e-0884.38ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ... [more]
Match NameE-valueIdentityDescription
A0A0D2U864_GOSRA2.8e-1548.25ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_00... [more]
A0A0A0L232_CUCSA1.8e-1453.61ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G01717... [more]
A0A067F0M4_CITSI2.9e-1239.74ATP-dependent Clp protease proteolytic subunit OS=Citrus sinensis GN=CISIN_1g022... [more]
A0A118JS48_CYNCS2.1e-0787.88ATP-dependent Clp protease proteolytic subunit OS=Cynara cardunculus var. scolym... [more]
D0EX73_9ROSA2.1e-0787.88ATP-dependent Clp protease proteolytic subunit OS=Eriobotrya japonica PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G17040.11.6e-0984.38 CLP protease R subunit 4[more]
Match NameE-valueIdentityDescription
gi|763784704|gb|KJB51775.1|4.0e-1548.25hypothetical protein B456_008G231300 [Gossypium raimondii][more]
gi|449459004|ref|XP_004147236.1|2.6e-1453.61PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chl... [more]
gi|641838105|gb|KDO57052.1|4.1e-1239.74hypothetical protein CISIN_1g022551mg [Citrus sinensis][more]
gi|659095808|ref|XP_008448778.1|5.4e-1250.52PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chl... [more]
gi|976900425|gb|KVH88627.1|3.1e-0787.88ClpP [Cynara cardunculus var. scolymus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023562ClpP/TepA
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004252 serine-type endopeptidase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G011540.1CmoCh16G011540.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPFAMPF00574CLP_proteasecoord: 68..99
score: 2.

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G011540CmoCh06G008360Cucurbita moschata (Rifu)cmocmoB294