CmoCh16G011540 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGTCGCCGAGGTCGCCGCCACTGCCTCCAGCTTCGCGCTTTCCAACAGAATATCGCCATTGATAATCGAACCGGACCTTGTCATTGTCCTCCTCCTCTCTCAGAACGGCGCAGCTTTCCACTAATTTTCTCATCCTTTTCGCCGGTGGCAGCGTCTTCGGGGACTTTTCCGGCATGAAGCTCCGGCCATCTTTGCTTAATCCGGATTATTCCTGTGAATCCAAGGGCAAAAGGTGCGTTGTTACTATGGTAAATGCCTGAATTTTTGTTCTTCCCGTGCTATTGGGATATTGGTTTTGAAGTTTTGTTTCTTCTCTCTTCCGTCTGTTCGAGCTAATTCGAGCTAATTTAGGGAATGATCAAAGAATACTCCCTCCATTGTTATTAGTTTTTAAAACAAAGCTATGAGAGCTTACGCGGACAATATCATACCATTACGGAGAGTTGTGTTTATTTAACATGGTATCAAAGCTATGCCCTAAATTAGTCGTGTCAATAGAATTCTCAAATGTCGAACAAAGGACTCCAAAAGAAAAAGGCATCCGAGACTCCTCGAAGGCATAGTAAAAAATGACTAAGACTCCAAAAGAAAACGAGTCGAGCCTCGATTAAGGGGAGACGTACTTTGTTCAAAAGGAGGTGTTGAATGAAAGTCCCACCTCGGCTAATTTAGGGAATGATCATGGGTTTATAATAAATGAATACTCTTTCCATTGATAAGAGGTCTTTTTGGGGAAGCCCAACGCAAAACCATGAGAGCTTATGCTCAAAGTAGACAATATCATACCATTGGGAGAATTGTGTTCATTTAACATTTTCAACTACTTTGGTTAATTAAATTTTAGTATGAGTCCTCTTCGGGGAAAAAGTGTGATATTAATTTGAAATTTTGCTGCTCATTGTTTGTGCGAAGAATATTCGATTTCTTTCTTTCTGTCCACCGATTTTAAAAGACAGCCATGATTAGATTTTTCCATAGAGTAGGGCTTTTGCATTCTTGAAAGGGCGGAACGTTAAAGCCATATCCAATAGATCATTTACCTCCCAAGGAATGAGAGATGTCGTCCGAATATATTTTGGAGCAACTTTCTCCAGATTTGGCATCTTATTTATACAAGAATCGAATGGTTTACTTAGGCATTACTCTTGTTCGTTCTGTCATGGAGTTGATACTTGCTGAATTTCTTTACCTTCAGTACGAGGATGAACTTTACATTAACCCCAAAGGATAACAAAGGTTAACCATGTCTTTAGAATCTTCGTTGTTTTAATGTGGATTGTGAGATCCTACATTGATTTGAGAGAGCAACGAGTGTCGGCAAGGACGTTGGGTCTCGAAGGGGGTAGATTGTGAAATCTCACATCAATTGGAGAGGGGAACAAGTGCCAACAAGGACGTTGGGTGACACAAGGGCCTTGTGGCCTAAGTGAGCTACCCTGTGGCACATACGTGTATCACGGTGAGGGCGAGCGTGCCGAGACGAGTGTCTCGGGCGACTTCTTTTGAAATGGGTTTTTGAAGGACAGTACCGGACGGCACGGGTGTGCCGGTATCGCGCCCTAGCCCACGAGTTGGAGGTTGCTACATACACCTGCTATTCGGTACGGTATCCGTAAATGACTCGGCATGGGCACGGGAGGGCCTATGCCTCGATAGAACCCGAATGGATGGATGTTCGGGAAGCCCCGATGAGATGAACGACACGCGAGCCCATTCTCGATGGCATGACCGAACGAGTTATGATGGCCGATGACATCCCGAGACTCGGGATGGCGTCAAGACATATGGACCTCGTCGATGGGGATCGAGATGGCAAGATGAGATGCGACGTTGTATTGAGAGACCTTGGCCAGAGTAGAGGCAAGGTCAGGCCGAATGAGTTGGCCTAGCGTAGAGGCAAGTCGGATGTGTCGCAGATGATTGAACATACACGCACAGGCGGCGTGTGTGGTTGAACAAGTTTGGATTCCGCACAAGCGATGTTCGATTGGCGAAGACAAACCTCGCCTAAGGTCCGACGAAGCCACAAAGTCGGGGCGAAAAATATATATGGGGCTTAATTCCCCTTAAGGCTAGTCGTGAACGTGTATAGATCACGACGCCGCACGGTCAAGAATGTAGGACCGTGACATTGGACTCCAAAGGAGGGTGGATTGTGAGATCGCACATCGGTTGGAGAGGGGAACAAAACATTATTGGTAAGGGTGTGGAAACCTCTTCCTAGCAGACGCGTTTTAAAATCCTCAGAGGAAGCCCAAAACTGAAAGTGCAAAGAGTGACAATATCTGCTAGTAGTGAGCTTAGGTCGTTACATCTGTTCTTTAGAATCCTGGTAGACATGTTGAGGACCCTTTGTTTACTGTTCATCACTTAGTATTCATTTGCACTGCAGATATGTTAAGCCTTCTATATTCACGTTATGCATTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAGCCGTTCTGCATAG ATGGAGGTCGCCGAGGTCGCCGCCACTGCCTCCAGCTTCGCGCTTTCCAACAGAATATCGCCATTGATAATCGAACCGGACCTTCTTTCCACTAATTTTCTCATCCTTTTCGCCGGTGGCAGCGTCTTCGGGGACTTTTCCGGCATGAAGCTCCGGCCATCTTTGCTTAATCCGGATTATTCCTGTGAATCCAAGGGCAAAAGATATGTTAAGCCTTCTATATTCACGTTATGCATTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAGCCGTTCTGCATAG ATGGAGGTCGCCGAGGTCGCCGCCACTGCCTCCAGCTTCGCGCTTTCCAACAGAATATCGCCATTGATAATCGAACCGGACCTTCTTTCCACTAATTTTCTCATCCTTTTCGCCGGTGGCAGCGTCTTCGGGGACTTTTCCGGCATGAAGCTCCGGCCATCTTTGCTTAATCCGGATTATTCCTGTGAATCCAAGGGCAAAAGATATGTTAAGCCTTCTATATTCACGTTATGCATTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAGCCGTTCTGCATAG
BLAST of CmoCh16G011540 vs. Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.8e-08 Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1
BLAST of CmoCh16G011540 vs. TrEMBL
Match: A0A0D2U864_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_008G231300 PE=3 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 2.8e-15 Identity = 69/143 (48.25%), Postives = 73/143 (51.05%), Query Frame = 1
BLAST of CmoCh16G011540 vs. TrEMBL
Match: A0A0A0L232_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G017170 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14 Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 1
BLAST of CmoCh16G011540 vs. TrEMBL
Match: A0A067F0M4_CITSI (ATP-dependent Clp protease proteolytic subunit OS=Citrus sinensis GN=CISIN_1g022551mg PE=3 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 2.9e-12 Identity = 60/151 (39.74%), Postives = 75/151 (49.67%), Query Frame = 1
BLAST of CmoCh16G011540 vs. TrEMBL
Match: A0A118JS48_CYNCS (ATP-dependent Clp protease proteolytic subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_026293 PE=3 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07 Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1
BLAST of CmoCh16G011540 vs. TrEMBL
Match: D0EX73_9ROSA (ATP-dependent Clp protease proteolytic subunit OS=Eriobotrya japonica PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07 Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1
BLAST of CmoCh16G011540 vs. TAIR10
Match: AT4G17040.1 (AT4G17040.1 CLP protease R subunit 4) HSP 1 Score: 59.3 bits (142), Expect = 1.6e-09 Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1
BLAST of CmoCh16G011540 vs. NCBI nr
Match: gi|763784704|gb|KJB51775.1| (hypothetical protein B456_008G231300 [Gossypium raimondii]) HSP 1 Score: 89.4 bits (220), Expect = 4.0e-15 Identity = 69/143 (48.25%), Postives = 73/143 (51.05%), Query Frame = 1
BLAST of CmoCh16G011540 vs. NCBI nr
Match: gi|449459004|ref|XP_004147236.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Cucumis sativus]) HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14 Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 1
BLAST of CmoCh16G011540 vs. NCBI nr
Match: gi|641838105|gb|KDO57052.1| (hypothetical protein CISIN_1g022551mg [Citrus sinensis]) HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12 Identity = 60/151 (39.74%), Postives = 75/151 (49.67%), Query Frame = 1
BLAST of CmoCh16G011540 vs. NCBI nr
Match: gi|659095808|ref|XP_008448778.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Cucumis melo]) HSP 1 Score: 79.0 bits (193), Expect = 5.4e-12 Identity = 49/97 (50.52%), Postives = 55/97 (56.70%), Query Frame = 1
BLAST of CmoCh16G011540 vs. NCBI nr
Match: gi|976900425|gb|KVH88627.1| (ClpP [Cynara cardunculus var. scolymus]) HSP 1 Score: 63.2 bits (152), Expect = 3.1e-07 Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |