Lsi07G012550 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G012550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ATP-dependent Clp protease proteolytic subunit
Location	chr07 : 18346699 .. 18350766 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCTTCCACTTTCGCTTTTCTCTATCTTCGGTTCTTCGTTTCAGATTATCGCACTGCTTCAAGGTTTTCAAGCCATGGAGGTCGCCACTACTGCCTCCAGCTTCGCGTTTACCAAGCGAATATCGCCATTAATTACTTCTTCCGATAATGGAAAATCGAACCGGATCTTTTCCTTCTCGTCCTCCTCTCTCAGAACGGCTCCGCTTTCCACTAATTTTCTCATCCCATTCGCCGGTGGCAGCGTCTCCGGGGACTTTTCCGGCGTGAAACTCCGGCCGTCTTTGCTTAATCCGGATTCGTCCCGTGGATCCAAGGGCAAACGGGGCGTTGTTACTATGGTAAATACCTGAGATTTTCTGTTCTTCCGGTGTTTTTGGGATATTGGTTCGAAATTCTGTTGCTTGTTTGTTCCTTCGACTACTTGGGTTAACTAAATTGTAGTTTATGAGTCCTCTTGGGGGAAATATTGCGATATTGGTTTGAAATTTTGCTGCTTGTTTGTTCATATATATATATATGTATGTATGTATGTATGTATGTATGTATATGTATGTATATAACTCTCAATGTGGTTCCCTTATAATGTGCATCTCTTAATATGTCTTGGTGCACATGAATCCTCGTAACTCTTTTGATTTGGGCATATGCCCTTCTTTTGTAAATTCATACATCACTTAAATTTGTTTCTTATAAAAATTAAAAAAAAATTGTTGCTTATTTGTTCTTTTACTACTTTGGTTCACTGTATTGTAGTTTCATAGTCCTATTTTGGAGAATTGTTGCTATGCTTTGTGGAAATTTGATAGCTGTTTACTTAGTGGTGTGATCAAATACTTACAAACGAAAGAGTCTCAATCTCAAATAGGCCGGGAGATTATAATGGAGTCTAAAAGGCAGACCCTTTTGGGAAAACTAATTTGTGACTTTAGCTACCTACAATGTACATGTGGGTTTGAATGAGCCTCTTTTCTAAATTTAAACGATGATTCTTACAGTTAACGGCCTCCCTTGTACTCTAAATGTTCTTTTCAGCACCACTCTACATTCCTGCTGGCCTCTTGTGTCTCATCTACCTGATTTCTTTGAACAGGTTATTCCATTTTCAAGGGGAAGTGCATGGGAGCAACCTCCTCCAGATTTGGCATCTTATTTATACAAGAATCGAATTGTATACTTGGGCATGTCTCTTGTCCCTTCTGTCACAGAGTTGATACTTGCTGAATTTCTTTACCTTCAGTATGAGGATGAAGCAAAGCCTATTTATCTTTACATTAACTCCACGGGGACAACAAAGGTTTTGTGTTTTAAAGTTTTATGTAGATTAACTGTGTTTTGATCTCACATTTTATATAGCTTAAACTTTAAGGTGATACCTTGGTTTTTTAATGATCGTGATGTAAGCAACTGGCAGAGGCCTTTGTTGTGTTAAGCACTTCCGTCAACTGTCTATAGTGATGAAAATAACATAAGGAGTAAGAAAAGGTTTCAATTTTCATAGCCGTTCTAATAGTAAAGCAGCATTTCAGCTTTTTTCTTGACCCCAAAAAAAAAAAAAAGGAAAGAAAGAAAGAGAAAACACCCATAATCCCTTCATCCTCCCCTTCCTGTTTTATATGCTCTTGCTAAAAGTAAAACATCTAAAAGTTCAACACGGCTTACCATTTTGAAAGAAACTGTTTGTCGACTTCAACTTACGTGCAGAAAAATGATTATTAACCTTTTGATCTTTTCCATGTTATAGTAGATCATAATGAGTGCTTGCATTTTCCAGGGTGGCGAGAAGTTGGGCTATGAGACTGAAGCATTTGCGATATATGATGTTATGAGGTTGTGATGTGAATGTTTATTTAATTGGTTTGGTATTCTGTTCTTTAGAATCTTGTTCTTTTATTGGGCATTCAAGACATGTTCAGGACCCAACGAAAGTTGTTTTCTTCATCACTTAGTATTCTTTCACTGTAGGTATGTTAAGCCTCCTATATTCACATTATGCGTTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAACCGTTCTGCATTGCCCTCATCAACAATAATGATAAAGCAGGTGTTCTAATCATCAACGGATATCTTTAGAATTTTTTTTCCTCCTTATTCTTCTACTCACTTCCTAACTTCAGAAAGGTGGTTGTATCTTGCATAGACTTGTCACGCTACATGTAAGCTGGTCTTTTGATATACTTTTGTGGAGTTACAGAATTTTTTGTTTTTTCTCTTTCAATTTGCAGCCAATTGCAAGGTTTCAGGGTCAAGCAACAGACATTGAGCTTGCTAGAAAAGAAGTACGGAATGTGAAGGCAGAACTGGTAAGATCATGGTTGAAATTTGTGTACTGGAATAACCTTCTCTTCATTCCCATACTCTTCTCTTTGTTTTCTTCATTCCTGAAATGAGAGGTAGGGATGTGCATTTGCTATTGTTCACTGGAGTTCTCAAATGGCTGGGATTTTTTTTGGGTAAGAAACTTAAACCATGTATAAAATAAAGATAGAGGTGATAACCACTTGGGTTCAAGCTATGGTGGCAGCCTACACATGAGTTATCATAGTAACTAAACCTAGTAAAGTTAGGTGGTTGTTCTGTGAGAATTATCAAGATGTGCGTAAGCTGGCTCAAACACTAATTTATAAATAAATTTTTTATAAAAATAAAGGCGAGTGCGAAGGACAGGGAGGTGTCTTCCTAGTTCAGATTAGGATTTACAGGCAGAAAGTTTCCCTAATTAGATCACCAAGAAGTAGTTACAAAAATGCTGTCAGGAGAGGTACAAGAAGTGGCTACAAAAATGAACAAACCAAAAAATCCTCTCAATGTCTAGAATAGTGTTGAAAAGTAATACTTATTTCTAGCATAAATTCCATGACAAGCTCACTTTCCACCAAAGAACAGCAGCTTGGTTCAGGAGTGTGCCATCAAAATAATTATTGGTGTATAGGGTTGTTTTTAGAAAGTTGAAATTTTACATTGTTCCTTCTAAACAAGCATAGGTAAACAAACTCACAGTTCTTTCCTTTTTAAAATCGATATTGAAGGTTAAGCTCTATGCCAAGCATATCGGAAAGTCGACTGAGGAGATTGAAGCTGATATCAGGCGGCCAAAATATTTTAGTCCCAGTGAAGCAGTTGAATATGGTATCATAGATAAGGTACCTGAATTGCAAAGTGTACGAATTTATCACATGTTATTGTGGCAATGCATTAAATTGAATATCATTTACTTTCATCAGGTACTATACAACGAAAGAACAACTGAGGACCGGGGAGTTGTATCTGACCTGAAAAAGGCACAACTTATTTAGTGTAGAAAAATGTGGATCGGTAAAATAATACCAAGGTAAAGTTCAATTACAAATCATTGCAGAGATATACCGGAAGTACTACATAATTAGTGATTATGCACTACTTGTTCTGATTGTTCATGGGCTGTTAAACATTAACTGTCAGTAGACTTGTTATTTGAGGACATGAACACCAAATCTTATAAACCAAATCATCTAAAGAAACATCAACTACCCTCTCCTGTTCTACCTTCTCTGTTGTAAAATTGTCAAAATCTTCATCTGGGAGTTTCAAAGCCATCTAATACATTGTTCCTACTTTCTCAGATAGAAGTTGCAAATACTGGTGTCTGAGAACTGAGATCTGGAATCCACAAGCAGTATTGGTCACGCACAGGAAATGATCTGTGGGTTTATTGCGAGCTTATCGACGTCCAGTATCTGAGGAACTTTCTGAATTATATTACAACTCTAGAACAATGTTACAAAAATGAAAACTGATGAGCATTATTGATGTTCAACTTCAACCAAGAAAATTGAAGCATTCTGTTTTGCTCATCTTCAACCAAGAAACTCTTGCTTTTTATGTGCTCCTCTGTTGTACCTTGAAATTTTCCCAATGTGCAGTGAAAATTCTTCCTTCTCGTGTAGAGGAACAATCTTTTCAAAGCTTTAATTTATTAACTTGAACACATGGTTTATACGATGAATAAATATCAGTCAAGGTTTGAAAGGTTGATGTTGAT

mRNA sequence

AAATCTTCCACTTTCGCTTTTCTCTATCTTCGGTTCTTCGTTTCAGATTATCGCACTGCTTCAAGGTTTTCAAGCCATGGAGGTCGCCACTACTGCCTCCAGCTTCGCGTTTACCAAGCGAATATCGCCATTAATTACTTCTTCCGATAATGGAAAATCGAACCGGATCTTTTCCTTCTCGTCCTCCTCTCTCAGAACGGCTCCGCTTTCCACTAATTTTCTCATCCCATTCGCCGGTGGCAGCGTCTCCGGGGACTTTTCCGGCGTGAAACTCCGGCCGTCTTTGCTTAATCCGGATTCGTCCCGTGGATCCAAGGGCAAACGGGGCGTTGTTACTATGGTTATTCCATTTTCAAGGGGAAGTGCATGGGAGCAACCTCCTCCAGATTTGGCATCTTATTTATACAAGAATCGAATTGTATACTTGGGCATGTCTCTTGTCCCTTCTGTCACAGAGTTGATACTTGCTGAATTTCTTTACCTTCAGTATGAGGATGAAGCAAAGCCTATTTATCTTTACATTAACTCCACGGGGACAACAAAGGGTGGCGAGAAGTTGGGCTATGAGACTGAAGCATTTGCGATATATGATGTTATGAGGTATGTTAAGCCTCCTATATTCACATTATGCGTTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAACCGTTCTGCATTGCCCTCATCAACAATAATGATAAAGCAGCCAATTGCAAGGTTTCAGGGTCAAGCAACAGACATTGAGCTTGCTAGAAAAGAAGTACGGAATGTGAAGGCAGAACTGGTTAAGCTCTATGCCAAGCATATCGGAAAGTCGACTGAGGAGATTGAAGCTGATATCAGGCGGCCAAAATATTTTAGTCCCAGTGAAGCAGTTGAATATGGTATCATAGATAAGGTACTATACAACGAAAGAACAACTGAGGACCGGGGAGTTGTATCTGACCTGAAAAAGGCACAACTTATTTAGTGTAGAAAAATGTGGATCGGTAAAATAATACCAAGATAGAAGTTGCAAATACTGGTGTCTGAGAACTGAGATCTGGAATCCACAAGCAGTATTGGTCACGCACAGGAAATGATCTGTGGGTTTATTGCGAGCTTATCGACGTCCAGTATCTGAGGAACTTTCTGAATTATATTACAACTCTAGAACAATGTTACAAAAATGAAAACTGATGAGCATTATTGATGTTCAACTTCAACCAAGAAAATTGAAGCATTCTGTTTTGCTCATCTTCAACCAAGAAACTCTTGCTTTTTATGTGCTCCTCTGTTGTACCTTGAAATTTTCCCAATGTGCAGTGAAAATTCTTCCTTCTCGTGTAGAGGAACAATCTTTTCAAAGCTTTAATTTATTAACTTGAACACATGGTTTATACGATGAATAAATATCAGTCAAGGTTTGAAAGGTTGATGTTGAT

Coding sequence (CDS)

ATGGAGGTCGCCACTACTGCCTCCAGCTTCGCGTTTACCAAGCGAATATCGCCATTAATTACTTCTTCCGATAATGGAAAATCGAACCGGATCTTTTCCTTCTCGTCCTCCTCTCTCAGAACGGCTCCGCTTTCCACTAATTTTCTCATCCCATTCGCCGGTGGCAGCGTCTCCGGGGACTTTTCCGGCGTGAAACTCCGGCCGTCTTTGCTTAATCCGGATTCGTCCCGTGGATCCAAGGGCAAACGGGGCGTTGTTACTATGGTTATTCCATTTTCAAGGGGAAGTGCATGGGAGCAACCTCCTCCAGATTTGGCATCTTATTTATACAAGAATCGAATTGTATACTTGGGCATGTCTCTTGTCCCTTCTGTCACAGAGTTGATACTTGCTGAATTTCTTTACCTTCAGTATGAGGATGAAGCAAAGCCTATTTATCTTTACATTAACTCCACGGGGACAACAAAGGGTGGCGAGAAGTTGGGCTATGAGACTGAAGCATTTGCGATATATGATGTTATGAGGTATGTTAAGCCTCCTATATTCACATTATGCGTTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAACCGTTCTGCATTGCCCTCATCAACAATAATGATAAAGCAGCCAATTGCAAGGTTTCAGGGTCAAGCAACAGACATTGAGCTTGCTAGAAAAGAAGTACGGAATGTGAAGGCAGAACTGGTTAAGCTCTATGCCAAGCATATCGGAAAGTCGACTGAGGAGATTGAAGCTGATATCAGGCGGCCAAAATATTTTAGTCCCAGTGAAGCAGTTGAATATGGTATCATAGATAAGGTACTATACAACGAAAGAACAACTGAGGACCGGGGAGTTGTATCTGACCTGAAAAAGGCACAACTTATTTAG

Protein sequence

MEVATTASSFAFTKRISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVSGDFSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNVKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKKAQLI

Homology

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BLAST of Lsi07G012550 vs. Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 7.1e-124
Identity = 235/306 (76.80%), Postives = 262/306 (85.62%), Query Frame = 1


Query: 1   MEVAT-TASSFAFTK-RISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVS 60
           MEVA  TA+SF   + R S +I SS     ++    SSSSLR A LS  FL P+ GGS+S
Sbjct: 1   MEVAAATATSFTTLRARTSAIIPSSTRNLRSKPRFSSSSSLR-ASLSNGFLSPYTGGSIS 60

Query: 61  GDFSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLG 120
            D  G KLR   LNP +   SK KRGVVTMVIPFS+GSA EQPPPDLASYL+KNRIVYLG
Sbjct: 61  SDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLG 120

Query: 121 MSLVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVK 180
           MSLVPSVTELILAEFLYLQYEDE KPIYLYINSTGTTK GEKLGY+TEAFAIYDVM YVK
Sbjct: 121 MSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVK 180

Query: 181 PPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRN 240
           PPIFTLCVGNAWGEAALLL AGA+GNRSALPSSTIMIKQPIARFQGQATD+E+ARKE+++
Sbjct: 181 PPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQATDVEIARKEIKH 240

Query: 241 VKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDL 300
           +K E+VKLY+KHIGKS E+IEAD++RPKYFSP+EAVEYGIIDKV+YNER ++DRGVVSDL
Sbjct: 241 IKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDL 300

Query: 301 KKAQLI 305
           KKAQLI
Sbjct: 301 KKAQLI 305

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BLAST of Lsi07G012550 vs. Swiss-Prot
Match: CLPR_SYNE7 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.4e-49
Identity = 97/204 (47.55%), Postives = 140/204 (68.63%), Query Frame = 1


Query: 91  PFSRGSAWEQPPPDLASYLYKNRIVYLGMSLVPS----------VTELILAEFLYLQYED 150
           P+    ++  PPPDL S L K RI+YLGM L  S          VTELI+A+ LYL++++
Sbjct: 11  PYYGDVSYRTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDN 70

Query: 151 EAKPIYLYINSTGTT-KGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAA 210
             KPIY YINSTGT+   G+ +GYETEAFAI D MRY+KPP+ T+C+G A G AA++L+ 
Sbjct: 71  PEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSG 130

Query: 211 GAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNVKAELVKLYAKHIGKSTEEIE 270
           G  GNR++LP +TI++ QP    QGQA+DI++  KEV   K  +++++A++ G+  + + 
Sbjct: 131 GTPGNRASLPHATIVLNQPRTGAQGQASDIQIRAKEVLANKRTMLEIFARNTGQDPDRLA 190

Query: 271 ADIRRPKYFSPSEAVEYGIIDKVL 284
            D  R  Y +P++AVEYG+ID+VL
Sbjct: 191 RDTDRMLYMTPAQAVEYGLIDRVL 214

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BLAST of Lsi07G012550 vs. Swiss-Prot
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.6e-46
Identity = 94/198 (47.47%), Postives = 139/198 (70.20%), Query Frame = 1


Query: 97  AWEQPPPDLASYLYKNRIVYLGMSLVPS----------VTELILAEFLYLQYEDEAKPIY 156
           A++ PPPDL S L K RIVYLGM L  S          VT+LI+A+ LYLQ++D  KPIY
Sbjct: 15  AFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIY 74

Query: 157 LYINSTGTT-KGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAQGNR 216
            YINSTGT+   G+ +G+ETEAFAI D + Y+KPP+ T+C+G A G AA++L++G +G R
Sbjct: 75  FYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYR 134

Query: 217 SALPSSTIMIKQPIARFQGQATDIELARKEVRNVKAELVKLYAKHIGKSTEEIEADIRRP 276
           ++LP +TI++ Q     QGQATDI++  KEV + K  ++++ + + G++ E++  D+ R 
Sbjct: 135 ASLPHATIVLNQNRTGAQGQATDIQIRAKEVISNKQTMLEILSLNTGQTQEKLAKDMDRT 194

Query: 277 KYFSPSEAVEYGIIDKVL 284
            Y +P++A EYG+ID+VL
Sbjct: 195 FYLTPAQAKEYGLIDRVL 212

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BLAST of Lsi07G012550 vs. Swiss-Prot
Match: CLPP2_GLOVI (ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus (strain PCC 7421) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 9.5e-44
Identity = 94/192 (48.96%), Postives = 125/192 (65.10%), Query Frame = 1


Query: 92  FSRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDEAKPIYLYINS 151
           +S    +  PPPDL S L   RIVYLG  +   V EL++A+ LYL+ ED AKPI +YINS
Sbjct: 16  YSGDYGFRTPPPDLPSLLLNERIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINS 75

Query: 152 TGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSS 211
            G        G+ET AFA+YD MR+V+ PI T+C+G A G +ALL+AAG +G R +LP+S
Sbjct: 76  PGVA------GFETSAFAVYDTMRHVRMPIKTICLGLAGGFSALLMAAGTKGQRMSLPNS 135

Query: 212 TIMIKQPIARFQGQATDIELARKEVRNVKAELVKLYAKHIGKSTEEIEADIRRPKYFSPS 271
            I++ QP    +GQATDI +  +E+   K  L +L + H GK+ E+I+ D  R  Y SP 
Sbjct: 136 RIILYQPYGGARGQATDINIRAQELLTTKRTLNQLLSIHTGKTVEQIDKDTERLFYMSPQ 195

Query: 272 EAVEYGIIDKVL 284
           EAV YG+IDKVL
Sbjct: 196 EAVSYGLIDKVL 201

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BLAST of Lsi07G012550 vs. Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.1e-42
Identity = 91/187 (48.66%), Postives = 126/187 (67.38%), Query Frame = 1


Query: 101 PPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTK-GGE 160
           PPPDL S L   RIVY+GM LVP+VTEL++AE +YLQ+ D  +PIY+YINSTGTT+  GE
Sbjct: 118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGE 177

Query: 161 KLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPI 220
            +G E+E FAIYD +  +K  + T+CVG A G+A LLL+AG +G R  +P +  MI+QP 
Sbjct: 178 TVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPR 237

Query: 221 ARFQG--QATDIELARKEVRNVKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYG 280
               G   A+D+ +  KEV   +  LV+L +KH G S E +   +RRP Y    +A E+G
Sbjct: 238 VPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFG 297

Query: 281 IIDKVLY 285
           +ID++L+
Sbjct: 298 VIDRILW 304

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BLAST of Lsi07G012550 vs. TrEMBL
Match: A0A0A0L232_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G017170 PE=3 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 6.0e-154
Identity = 282/304 (92.76%), Postives = 291/304 (95.72%), Query Frame = 1


Query: 1   MEVATTASSFAFTKRISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVSGD 60
           MEVATTASSFA TKRISPLITSS NGKSNR  S SSSS+R APLSTNFLIPFAGGSVSG+
Sbjct: 1   MEVATTASSFALTKRISPLITSSHNGKSNRTLSMSSSSVRMAPLSTNFLIPFAGGSVSGE 60

Query: 61  FSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMS 120
           FSGVKLRPS LNP+ S GSKGKRGVVTMVIPF+RGSAWEQPPPDLASYLYKNRIVYLGMS
Sbjct: 61  FSGVKLRPSSLNPNYSPGSKGKRGVVTMVIPFARGSAWEQPPPDLASYLYKNRIVYLGMS 120

Query: 121 LVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180
           LVPSVTELILAEFLYLQYEDE KPIYLY+NSTGTTKGGEKLGYETEAFA+YDVM YVKPP
Sbjct: 121 LVPSVTELILAEFLYLQYEDETKPIYLYVNSTGTTKGGEKLGYETEAFAVYDVMSYVKPP 180

Query: 181 IFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNVK 240
           IFTLCVGNAWGEAALLLAAGA GNRSALPSSTIMIK+PIARFQGQATD+E+ARKEVRNVK
Sbjct: 181 IFTLCVGNAWGEAALLLAAGAPGNRSALPSSTIMIKEPIARFQGQATDVEIARKEVRNVK 240

Query: 241 AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300
           AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNER TEDRGVVSDLKK
Sbjct: 241 AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKK 300

Query: 301 AQLI 305
           AQLI
Sbjct: 301 AQLI 304

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BLAST of Lsi07G012550 vs. TrEMBL
Match: M5WA43_PRUPE (ATP-dependent Clp protease proteolytic subunit OS=Prunus persica GN=PRUPE_ppa009129mg PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 8.7e-137
Identity = 258/304 (84.87%), Postives = 274/304 (90.13%), Query Frame = 1


Query: 1   MEVATTASSFAFTKRISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVSGD 60
           MEVATTASSFA   R+    T+     S+R  + SS +L  A LSTNFL PFAG S+S +
Sbjct: 1   MEVATTASSFALHTRMLASPTTRRALSSSRTQTTSSPTLPRASLSTNFLSPFAGTSISSE 60

Query: 61  FSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMS 120
           FSG KLRPS LNP S RGSK KRGVVTMVIPF RGSAWEQPPPDLASYLYKNRIVYLGMS
Sbjct: 61  FSGHKLRPSSLNPASFRGSKPKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYLGMS 120

Query: 121 LVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180
           LVPSVTELILAEFLYLQYEDE KPIYLY+NSTGTTKGGEKLGYETEAFAIYDVMRYVKPP
Sbjct: 121 LVPSVTELILAEFLYLQYEDETKPIYLYVNSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180

Query: 181 IFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNVK 240
           IFTLCVGNAWGEAALLLAAG++GNRSALPSSTIM+KQPIARFQGQATDIELAR+EVRNVK
Sbjct: 181 IFTLCVGNAWGEAALLLAAGSKGNRSALPSSTIMMKQPIARFQGQATDIELARREVRNVK 240

Query: 241 AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300
            ELVKL++KH+GKSTE+IEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK
Sbjct: 241 DELVKLFSKHLGKSTEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300

Query: 301 AQLI 305
           AQLI
Sbjct: 301 AQLI 304

[Close]

BLAST of Lsi07G012550 vs. TrEMBL
Match: D0EX73_9ROSA (ATP-dependent Clp protease proteolytic subunit OS=Eriobotrya japonica PE=2 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 1.8e-134
Identity = 256/304 (84.21%), Postives = 270/304 (88.82%), Query Frame = 1


Query: 1   MEVATTASSFAFTKRISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVSGD 60
           MEVATTASSFA   R+    T      + R    SS SL  A LST+FL PFAG S+S +
Sbjct: 1   MEVATTASSFALHTRMLATPTIPRARNTTRPHPTSSRSLPRASLSTSFLCPFAGNSLSSE 60

Query: 61  FSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMS 120
           FSG KLRPS LNP S RGS+ KRGVVTMVI F RGSAWEQPPPDLASYLYKNRIVYLGMS
Sbjct: 61  FSGHKLRPSSLNPASFRGSEPKRGVVTMVILFQRGSAWEQPPPDLASYLYKNRIVYLGMS 120

Query: 121 LVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180
           LVPSVTELILAEFLYLQYED+ KPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP
Sbjct: 121 LVPSVTELILAEFLYLQYEDDTKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180

Query: 181 IFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNVK 240
           IFTLCVGNAWGEAALLLAAGA+GNRSALPSSTIM+KQPIARFQGQATDIELAR+EVRNVK
Sbjct: 181 IFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMMKQPIARFQGQATDIELARREVRNVK 240

Query: 241 AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300
            ELVKL+AKH+GKSTE+IEADIRRPKYFSPSEAVEYGIIDKVLYNER+TEDRGVVSDLKK
Sbjct: 241 DELVKLFAKHVGKSTEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERSTEDRGVVSDLKK 300

Query: 301 AQLI 305
           AQLI
Sbjct: 301 AQLI 304

[Close]

BLAST of Lsi07G012550 vs. TrEMBL
Match: A0A151S9M7_CAJCA (ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Cajanus cajan GN=KK1_026662 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 6.0e-130
Identity = 253/305 (82.95%), Postives = 269/305 (88.20%), Query Frame = 1


Query: 1   MEVATTASSFAFTKRISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAG-GSVSG 60
           MEVAT ASSFA  K +  L +SS  G   R  + +SSSLRT+ LSTNF+ P+AG  S S 
Sbjct: 2   MEVATAASSFALNKPMLALPSSSRTGTPIR--AMNSSSLRTS-LSTNFVAPYAGISSASS 61

Query: 61  DFSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGM 120
            FSG KLRPS LNP S  GS  KRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGM
Sbjct: 62  LFSGHKLRPSSLNPASFPGSSPKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGM 121

Query: 121 SLVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKP 180
           SLVPSVTELILAEFLYLQYED+ KPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKP
Sbjct: 122 SLVPSVTELILAEFLYLQYEDDDKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKP 181

Query: 181 PIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNV 240
           PIFTLCVGNAWGEAALLLAAGA+GNRSALPSSTIMI+QPIARFQGQATD+ LAR+EV NV
Sbjct: 182 PIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARREVNNV 241

Query: 241 KAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLK 300
           K ELVKLYAKHI K+ E+IEADI+RPKYFSPSEAVEYGIIDKVLYN+R TEDRGVVSDLK
Sbjct: 242 KTELVKLYAKHIEKTPEQIEADIQRPKYFSPSEAVEYGIIDKVLYNDRGTEDRGVVSDLK 301

Query: 301 KAQLI 305
           KAQLI
Sbjct: 302 KAQLI 303

[Close]

BLAST of Lsi07G012550 vs. TrEMBL
Match: A0A059C1V4_EUCGR (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis GN=EUGRSUZ_E00356 PE=3 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 1.0e-129
Identity = 252/307 (82.08%), Postives = 269/307 (87.62%), Query Frame = 1


Query: 1   MEVATTASSFAFTKR-ISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFL--IPFAGGSV 60
           MEVAT +SSFA  +R +SP  +S+    S+R    S S      LST FL     A GSV
Sbjct: 1   MEVATASSSFALHRRMLSPAASST----SSRTRKTSVSPAARVSLSTGFLPSASAAAGSV 60

Query: 61  SGDFSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYL 120
           SG+FSG KLRP  L+P S+  S+GKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYL
Sbjct: 61  SGEFSGAKLRPKSLSPASNPRSRGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYL 120

Query: 121 GMSLVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYV 180
           GMSLVPSVTELILAEFLYLQYED  KPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYV
Sbjct: 121 GMSLVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYV 180

Query: 181 KPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVR 240
           KPPIFTLCVGNAWGEAALLLAAGA+GNRSALPSSTIM+KQPIARFQGQATDI+LARKEV+
Sbjct: 181 KPPIFTLCVGNAWGEAALLLAAGARGNRSALPSSTIMMKQPIARFQGQATDIDLARKEVK 240

Query: 241 NVKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSD 300
           NVKAELVKLYAKHIGK+ EEIEADIRRPKYFSPSEAVEYGIIDKVLYNER++ED GVVSD
Sbjct: 241 NVKAELVKLYAKHIGKTPEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERSSEDHGVVSD 300

Query: 301 LKKAQLI 305
           LKKAQLI
Sbjct: 301 LKKAQLI 303

[Close]

BLAST of Lsi07G012550 vs. TAIR10
Match: AT4G17040.1 (AT4G17040.1 CLP protease R subunit 4)

HSP 1 Score: 444.9 bits (1143), Expect = 4.0e-125
Identity = 235/306 (76.80%), Postives = 262/306 (85.62%), Query Frame = 1


Query: 1   MEVAT-TASSFAFTK-RISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVS 60
           MEVA  TA+SF   + R S +I SS     ++    SSSSLR A LS  FL P+ GGS+S
Sbjct: 1   MEVAAATATSFTTLRARTSAIIPSSTRNLRSKPRFSSSSSLR-ASLSNGFLSPYTGGSIS 60

Query: 61  GDFSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLG 120
            D  G KLR   LNP +   SK KRGVVTMVIPFS+GSA EQPPPDLASYL+KNRIVYLG
Sbjct: 61  SDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLG 120

Query: 121 MSLVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVK 180
           MSLVPSVTELILAEFLYLQYEDE KPIYLYINSTGTTK GEKLGY+TEAFAIYDVM YVK
Sbjct: 121 MSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVK 180

Query: 181 PPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRN 240
           PPIFTLCVGNAWGEAALLL AGA+GNRSALPSSTIMIKQPIARFQGQATD+E+ARKE+++
Sbjct: 181 PPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQATDVEIARKEIKH 240

Query: 241 VKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDL 300
           +K E+VKLY+KHIGKS E+IEAD++RPKYFSP+EAVEYGIIDKV+YNER ++DRGVVSDL
Sbjct: 241 IKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDL 300

Query: 301 KKAQLI 305
           KKAQLI
Sbjct: 301 KKAQLI 305

[Close]

BLAST of Lsi07G012550 vs. TAIR10
Match: AT1G09130.3 (AT1G09130.3 ATP-dependent caseinolytic (Clp) protease/crotonase family protein)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-43
Identity = 91/187 (48.66%), Postives = 126/187 (67.38%), Query Frame = 1


Query: 101 PPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTK-GGE 160
           PPPDL S L   RIVY+GM LVP+VTEL++AE +YLQ+ D  +PIY+YINSTGTT+  GE
Sbjct: 118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGE 177

Query: 161 KLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPI 220
            +G E+E FAIYD +  +K  + T+CVG A G+A LLL+AG +G R  +P +  MI+QP 
Sbjct: 178 TVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPR 237

Query: 221 ARFQG--QATDIELARKEVRNVKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYG 280
               G   A+D+ +  KEV   +  LV+L +KH G S E +   +RRP Y    +A E+G
Sbjct: 238 VPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFG 297

Query: 281 IIDKVLY 285
           +ID++L+
Sbjct: 298 VIDRILW 304

[Close]

BLAST of Lsi07G012550 vs. TAIR10
Match: AT1G49970.1 (AT1G49970.1 CLP protease proteolytic subunit 1)

HSP 1 Score: 158.3 bits (399), Expect = 7.5e-39
Identity = 88/193 (45.60%), Postives = 123/193 (63.73%), Query Frame = 1


Query: 95  GSAWEQP---PPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDEAKPIYLYINS 154
           G   E+P   PPDL S L   RI YLGM +VP+VTEL++A+F++L Y++  KPIYLYINS
Sbjct: 159 GGGSERPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINS 218

Query: 155 TGT-TKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALP- 214
            GT  +  E +G ETEA+AI D + Y K  ++T+  G A+G+AA+LL+ G +G R+  P 
Sbjct: 219 PGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPH 278

Query: 215 SSTIMIKQPIARFQGQATDIELARKEVRNVKAELVKLYAKHIGKSTEEIEADIRRPKYFS 274
           SST +    + R  G A D+ +  KE+       ++L AK  GKS E+I  DI+RPKY  
Sbjct: 279 SSTKLYLPKVNRSSGAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQ 338

Query: 275 PSEAVEYGIIDKV 283
              A++YGI DK+
Sbjct: 339 AQAAIDYGIADKI 351

[Close]

BLAST of Lsi07G012550 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-34
Identity = 83/232 (35.78%), Postives = 135/232 (58.19%), Query Frame = 1


Query: 59  GDFSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLG 118
           G  SG K+  S  +  ++  + G+R    + +     S  E+   D+ S L K RI+ + 
Sbjct: 4   GLVSGAKMLSSTPSSMATSIATGRRSYSLIPMVIEHSSRGERAY-DIFSRLLKERIICIN 63

Query: 119 MSLVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVK 178
             +    + +++A+ LYL+ E+ +KPI++Y+NS G        G+ T   AIYD M+Y++
Sbjct: 64  GPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPG--------GHVTAGLAIYDTMQYIR 123

Query: 179 PPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRN 238
            PI T+C+G A   A+LLLAAGA+G R +LP++T+MI QP   + GQA DI +  K++  
Sbjct: 124 SPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVR 183

Query: 239 VKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTE 291
           V   L +LY KH G+  + +  ++ R  + +P EA  +GIID+V+ +ER  E
Sbjct: 184 VWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVI-DERPLE 225

[Close]

BLAST of Lsi07G012550 vs. TAIR10
Match: AT1G12410.1 (AT1G12410.1 CLP protease proteolytic subunit 2)

HSP 1 Score: 132.1 bits (331), Expect = 5.7e-31
Identity = 71/188 (37.77%), Postives = 110/188 (58.51%), Query Frame = 1


Query: 104 DLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGY 163
           D+ + LY+ R++++G ++    +  ILA  LYL   D+++ IY+Y+N  G        G 
Sbjct: 89  DIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPG--------GD 148

Query: 164 ETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQ 223
            T + AIYD M+ +K P+ T CVG A+  A  LLAAG +G+R A+P S I ++ P    +
Sbjct: 149 LTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAAR 208

Query: 224 GQATDIELARKEVRNVKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVL 283
           GQA DI+   KE+  ++  L    AK+ G+  E +  D+ R K F+  EA+EYG+IDK++
Sbjct: 209 GQADDIQNEAKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRFNAEEAIEYGLIDKIV 268

Query: 284 YNERTTED 292
              R  ED
Sbjct: 269 RPPRIKED 268

[Close]

BLAST of Lsi07G012550 vs. NCBI nr
Match: gi|659095808|ref|XP_008448778.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Cucumis melo])

HSP 1 Score: 552.7 bits (1423), Expect = 3.9e-154
Identity = 284/304 (93.42%), Postives = 291/304 (95.72%), Query Frame = 1


Query: 1   MEVATTASSFAFTKRISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVSGD 60
           MEVATTASSFA TKRISPL  SS+ GKSNR  S SSSS+RTAPLSTNFLIPFAGGSVSGD
Sbjct: 1   MEVATTASSFALTKRISPLFASSNYGKSNRTLSLSSSSVRTAPLSTNFLIPFAGGSVSGD 60

Query: 61  FSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMS 120
           FSGVKLRP  LNP+   GSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMS
Sbjct: 61  FSGVKLRPYSLNPNCFPGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMS 120

Query: 121 LVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180
           LVPSVTELILAEFLYLQYEDE KPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP
Sbjct: 121 LVPSVTELILAEFLYLQYEDETKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180

Query: 181 IFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNVK 240
           IFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATD+ELARKEVRNVK
Sbjct: 181 IFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDVELARKEVRNVK 240

Query: 241 AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300
           AELVKL+AKH+GKSTEEIEADIRRPKYF+PSEAVEYGIIDKVLYNERTTEDRGVVSDLKK
Sbjct: 241 AELVKLFAKHVGKSTEEIEADIRRPKYFTPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300

Query: 301 AQLI 305
           AQLI
Sbjct: 301 AQLI 304

[Close]

BLAST of Lsi07G012550 vs. NCBI nr
Match: gi|449459004|ref|XP_004147236.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 551.6 bits (1420), Expect = 8.6e-154
Identity = 282/304 (92.76%), Postives = 291/304 (95.72%), Query Frame = 1


Query: 1   MEVATTASSFAFTKRISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVSGD 60
           MEVATTASSFA TKRISPLITSS NGKSNR  S SSSS+R APLSTNFLIPFAGGSVSG+
Sbjct: 1   MEVATTASSFALTKRISPLITSSHNGKSNRTLSMSSSSVRMAPLSTNFLIPFAGGSVSGE 60

Query: 61  FSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMS 120
           FSGVKLRPS LNP+ S GSKGKRGVVTMVIPF+RGSAWEQPPPDLASYLYKNRIVYLGMS
Sbjct: 61  FSGVKLRPSSLNPNYSPGSKGKRGVVTMVIPFARGSAWEQPPPDLASYLYKNRIVYLGMS 120

Query: 121 LVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180
           LVPSVTELILAEFLYLQYEDE KPIYLY+NSTGTTKGGEKLGYETEAFA+YDVM YVKPP
Sbjct: 121 LVPSVTELILAEFLYLQYEDETKPIYLYVNSTGTTKGGEKLGYETEAFAVYDVMSYVKPP 180

Query: 181 IFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNVK 240
           IFTLCVGNAWGEAALLLAAGA GNRSALPSSTIMIK+PIARFQGQATD+E+ARKEVRNVK
Sbjct: 181 IFTLCVGNAWGEAALLLAAGAPGNRSALPSSTIMIKEPIARFQGQATDVEIARKEVRNVK 240

Query: 241 AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300
           AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNER TEDRGVVSDLKK
Sbjct: 241 AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKK 300

Query: 301 AQLI 305
           AQLI
Sbjct: 301 AQLI 304

[Close]

BLAST of Lsi07G012550 vs. NCBI nr
Match: gi|595847747|ref|XP_007209390.1| (hypothetical protein PRUPE_ppa009129mg [Prunus persica])

HSP 1 Score: 494.6 bits (1272), Expect = 1.3e-136
Identity = 258/304 (84.87%), Postives = 274/304 (90.13%), Query Frame = 1


Query: 1   MEVATTASSFAFTKRISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVSGD 60
           MEVATTASSFA   R+    T+     S+R  + SS +L  A LSTNFL PFAG S+S +
Sbjct: 1   MEVATTASSFALHTRMLASPTTRRALSSSRTQTTSSPTLPRASLSTNFLSPFAGTSISSE 60

Query: 61  FSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMS 120
           FSG KLRPS LNP S RGSK KRGVVTMVIPF RGSAWEQPPPDLASYLYKNRIVYLGMS
Sbjct: 61  FSGHKLRPSSLNPASFRGSKPKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYLGMS 120

Query: 121 LVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180
           LVPSVTELILAEFLYLQYEDE KPIYLY+NSTGTTKGGEKLGYETEAFAIYDVMRYVKPP
Sbjct: 121 LVPSVTELILAEFLYLQYEDETKPIYLYVNSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180

Query: 181 IFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNVK 240
           IFTLCVGNAWGEAALLLAAG++GNRSALPSSTIM+KQPIARFQGQATDIELAR+EVRNVK
Sbjct: 181 IFTLCVGNAWGEAALLLAAGSKGNRSALPSSTIMMKQPIARFQGQATDIELARREVRNVK 240

Query: 241 AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300
            ELVKL++KH+GKSTE+IEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK
Sbjct: 241 DELVKLFSKHLGKSTEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300

Query: 301 AQLI 305
           AQLI
Sbjct: 301 AQLI 304

[Close]

BLAST of Lsi07G012550 vs. NCBI nr
Match: gi|645265894|ref|XP_008238370.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Prunus mume])

HSP 1 Score: 492.7 bits (1267), Expect = 4.8e-136
Identity = 257/304 (84.54%), Postives = 273/304 (89.80%), Query Frame = 1


Query: 1   MEVATTASSFAFTKRISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVSGD 60
           MEVATTASSFA   R+    T+      +R  + SS +L  A LSTNFL PFAG S+S +
Sbjct: 1   MEVATTASSFALHTRMLASPTTRRALSHSRTQTTSSPTLPRASLSTNFLSPFAGTSISSE 60

Query: 61  FSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMS 120
           FSG KLRPS LNP S RGSK KRGVVTMVIPF RGSAWEQPPPDLASYLYKNRIVYLGMS
Sbjct: 61  FSGHKLRPSSLNPASFRGSKPKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYLGMS 120

Query: 121 LVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180
           LVPSVTELILAEFLYLQYEDE KPIYLY+NSTGTTKGGEKLGYETEAFAIYDVMRYVKPP
Sbjct: 121 LVPSVTELILAEFLYLQYEDETKPIYLYVNSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180

Query: 181 IFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNVK 240
           IFTLCVGNAWGEAALLLAAG++GNRSALPSSTIM+KQPIARFQGQATDIELAR+EVRNVK
Sbjct: 181 IFTLCVGNAWGEAALLLAAGSKGNRSALPSSTIMMKQPIARFQGQATDIELARREVRNVK 240

Query: 241 AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300
            ELVKL++KH+GKSTE+IEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK
Sbjct: 241 DELVKLFSKHLGKSTEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300

Query: 301 AQLI 305
           AQLI
Sbjct: 301 AQLI 304

[Close]

BLAST of Lsi07G012550 vs. NCBI nr
Match: gi|694390977|ref|XP_009371040.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 489.6 bits (1259), Expect = 4.0e-135
Identity = 258/304 (84.87%), Postives = 270/304 (88.82%), Query Frame = 1


Query: 1   MEVATTASSFAFTKRISPLITSSDNGKSNRIFSFSSSSLRTAPLSTNFLIPFAGGSVSGD 60
           MEVATTASSFA   R+    T      + R    SS SL  A LST+FL PFAG S+S D
Sbjct: 1   MEVATTASSFALHTRMLATPTIPRALNTTRPHPTSSRSLPRASLSTSFLSPFAGNSLSSD 60

Query: 61  FSGVKLRPSLLNPDSSRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMS 120
           FSG KLRPS LNP S  GSK KRGVVTMVIPF RGSAWEQPPPDLASYLYKNRIVYLGMS
Sbjct: 61  FSGHKLRPSSLNPASFCGSKPKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYLGMS 120

Query: 121 LVPSVTELILAEFLYLQYEDEAKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180
           LVPSVTELILAEFLYLQYED+ KPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP
Sbjct: 121 LVPSVTELILAEFLYLQYEDDTKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPP 180

Query: 181 IFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQPIARFQGQATDIELARKEVRNVK 240
           IFTLCVGNAWGEAALLLAAGA+GNRSALPSSTIM+KQPIARFQGQATDIELAR+EVRNVK
Sbjct: 181 IFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMMKQPIARFQGQATDIELARREVRNVK 240

Query: 241 AELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKK 300
            ELVKL+AKH+GKSTE+IEADIRRPKYFSPSEAVEYGIIDKVLYNER+TEDRGVVSDLKK
Sbjct: 241 DELVKLFAKHVGKSTEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERSTEDRGVVSDLKK 300

Query: 301 AQLI 305
           AQLI
Sbjct: 301 AQLI 304

The following BLAST results are available for this feature:

BLAST of Lsi07G012550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPR4_ARATH	7.1e-124	76.80	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]
CLPR_SYNE7	4.4e-49	47.55	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus el...	[more]
CLPR_SYNY3	4.6e-46	47.47	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp...	[more]
CLPP2_GLOVI	9.5e-44	48.96	ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus (strai...	[more]
CLPR3_ARATH	3.1e-42	48.66	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]

BLAST of Lsi07G012550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L232_CUCSA	6.0e-154	92.76	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G01717...	[more]
M5WA43_PRUPE	8.7e-137	84.87	ATP-dependent Clp protease proteolytic subunit OS=Prunus persica GN=PRUPE_ppa009...	[more]
D0EX73_9ROSA	1.8e-134	84.21	ATP-dependent Clp protease proteolytic subunit OS=Eriobotrya japonica PE=2 SV=1	[more]
A0A151S9M7_CAJCA	6.0e-130	82.95	ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Cajanus cajan GN=KK...	[more]
A0A059C1V4_EUCGR	1.0e-129	82.08	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis GN=EUGRSUZ_...	[more]

BLAST of Lsi07G012550 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17040.1	4.0e-125	76.80	CLP protease R subunit 4	[more]
AT1G09130.3	1.7e-43	48.66	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G49970.1	7.5e-39	45.60	CLP protease proteolytic subunit 1	[more]
AT5G23140.1	1.5e-34	35.78	nuclear-encoded CLP protease P7	[more]
AT1G12410.1	5.7e-31	37.77	CLP protease proteolytic subunit 2	[more]

BLAST of Lsi07G012550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095808\|ref\|XP_008448778.1\|	3.9e-154	93.42	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chl...	[more]
gi\|449459004\|ref\|XP_004147236.1\|	8.6e-154	92.76	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chl...	[more]
gi\|595847747\|ref\|XP_007209390.1\|	1.3e-136	84.87	hypothetical protein PRUPE_ppa009129mg [Prunus persica]	[more]
gi\|645265894\|ref\|XP_008238370.1\|	4.8e-136	84.54	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chl...	[more]
gi\|694390977\|ref\|XP_009371040.1\|	4.0e-135	84.87	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chl...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR023562	ClpP/TepA
IPR001907	ClpP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0000302	response to reactive oxygen species
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0032880	regulation of protein localization
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G012550.1	Lsi07G012550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 204..223 score: 9.3E-25coord: 261..280 score: 9.3E-25coord: 104..119 score: 9.3E-25coord: 183..200 score: 9.3E-25coord: 144..164 score: 9.3
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 30..304 score: 2.7E
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 104..284 score: 2.6
None	No IPR available	unknown	Coil	Coil	coord: 229..249 scor
None	No IPR available	PANTHER	PTHR10381:SF25	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 4, CHLOROPLASTIC	coord: 30..304 score: 2.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G012550	Csa3G017170	Cucumber (Chinese Long) v2	culsiB228
Lsi07G012550	CSPI03G02270	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G012550	Cucsa.321320	Cucumber (Gy14) v1	cgylsiB530
Lsi07G012550	CmaCh16G011060	Cucurbita maxima (Rimu)	cmalsiB322
Lsi07G012550	CmaCh06G008130	Cucurbita maxima (Rimu)	cmalsiB775
Lsi07G012550	CmoCh16G011540	Cucurbita moschata (Rifu)	cmolsiB311
Lsi07G012550	CmoCh06G008360	Cucurbita moschata (Rifu)	cmolsiB766
Lsi07G012550	Cla005597	Watermelon (97103) v1	lsiwmB428
Lsi07G012550	MELO3C013900	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G012550	ClCG10G002260	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G012550	MELO3C013900.2	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G012550	Cla97C10G186850	Watermelon (97103) v2	lsiwmbB395
Lsi07G012550	Bhi11G000068	Wax gourd	lsiwgoB539
Lsi07G012550	Cp4.1LG08g07090	Cucurbita pepo (Zucchini)	cpelsiB721
Lsi07G012550	CsGy3G002170	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G012550	Carg12044	Silver-seed gourd	carlsiB513
Lsi07G012550	CsaV3_3G002300	Cucumber (Chinese Long) v3	cuclsiB250

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G012550	Bottle gourd (USVL1VR-Ls)	lsilsiB162
Lsi07G012550	Cucumber (Gy14) v1	cgylsiB510
Lsi07G012550	Cucurbita maxima (Rimu)	cmalsiB497
Lsi07G012550	Cucurbita maxima (Rimu)	cmalsiB591
Lsi07G012550	Cucurbita moschata (Rifu)	cmolsiB574
Lsi07G012550	Cucurbita pepo (Zucchini)	cpelsiB181
Lsi07G012550	Cucurbita pepo (Zucchini)	cpelsiB630
Lsi07G012550	Wild cucumber (PI 183967)	cpilsiB228
Lsi07G012550	Cucumber (Chinese Long) v2	culsiB229
Lsi07G012550	Melon (DHL92) v3.5.1	lsimeB439
Lsi07G012550	Watermelon (Charleston Gray)	lsiwcgB385
Lsi07G012550	Watermelon (97103) v1	lsiwmB424
Lsi07G012550	Cucumber (Gy14) v2	cgyblsiB218
Lsi07G012550	Melon (DHL92) v3.6.1	lsimedB458
Lsi07G012550	Silver-seed gourd	carlsiB644
Lsi07G012550	Silver-seed gourd	carlsiB721
Lsi07G012550	Cucumber (Chinese Long) v3	cuclsiB251
Lsi07G012550	Watermelon (97103) v2	lsiwmbB418