CmoCh16G005210 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G005210
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cellular nucleic acid-binding
Location	Cmo_Chr16 : 2522582 .. 2525730 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTTTTTGATAATTCTAACCTAAACGAAATTATACCCAAGGCGGGAAGCAAAACGATAGAAGAAAAAGAGGCAAATTTCAAAACCGAGTTCGATCGCGGAGGGAGAGAGATGAAATTCGAAGCTAAGAGGAATTTTGATTTCGATCTCGGAGATGACGACGACGACGAGGATTTTCTTTCGGAGGTGGCCGCGGCGGAAGCTCGTGCCCTAGCTAGTAAACGTAGAAAAATCCCCAATCATACCATCGATCCGCCCAAAAGAGCGATCGCGGAGGTTACGAGCAAAGTTTCCCCTAACGCAGATGCGGAAGGGATCTACATCGCCGCTTTGAAAGGAGACCCTATTATCCTCTCGCAACTTTCTGGTCGGATAGCCAATTCTGGAAATAAAGGGTTCATCTCTGCGAATACTACTGCTCATGCTCAATCGGAGGGTGGTGGCTCGTGTTTTAAATGCGGGAAATTAGGGCATTGGGCTAGAGACTGCGATGCTCCGGGAAGTGGAGGGTCTTTCAGCTTTTCAGGAAATGATACGTCTGTGGCCGAGAAATCATGCCCCTGCGGAATGGGAGTATGTGTAGTACTAACTGCGAATACGGAGAGGAATCGAGGTCGAAAATTTTACAAATGTCCCGTTCGACAGGTGAGGAGGCTGCGTTCTTTTTTTAGTATCCTTTCTTCCTCTTCCCCAATGGCCGCCATTGTTGAAGTCATGTAATGATGCCGCGCAAACTTGAGAAATGGAACAGCGATCTTAAGTTCTGATGAATTTATGTCCTTATTCATCGGTTTGATGCTGGGTTTTGTCAAAAATATATATGCAGCTATTAAGAACCTTGAGGAAGATATCGGTGTTACTCAAACCTATGTAGCATTCATGTAGAAATTAAATTAGTAATGCGTAATGTAATATTGCCACTGATTCATATAATTTTTCTTGACTAAAACAGTGTTACTAAACATAAATTTTGCTATACCATTGTTAGCTCAAAGCTCATTAGATACTTTTTCTTTACGCAATAACTTTTTATCATCACATGGTTATATATCATGCTCCTACTATCTTTTGATATGCATTTAATTGCTCTCAGGAAAATGGTGGCTGCGGATTCTTTGAGTGGTGTGACAATGCCTCTGCAACTAATATAATGACTTATGGAAGCCAAAATCGTGCATCAAGTTCTTCATTTTCAGACCTTAAGTGCCCCTGTGGTGCTGGTTCTTGCATAACTCTAACAGCCAAAACAGGGGAAAATGTGGGGCAGCAATTCTATCGTTGCCCTTCATACCAGGTAATTTTATAGCAGAAATGTTTGTGCAGCAGTTTTTATTGTCTTGTTTAGATTTCGGGTTGCTGAATTTTCATTTTCATATTAAGAAGAATGTCATGAACTATCCAATTATCTGATTGAACTGTGGCAAATCTTGAAATGTATACGCATTTGGTGCTTCATTCAGACTGATGGGAAGAAAGTAAAATTTGCTCTAATACCTTGGCTAAGTTTAATGCTTTTCCTACATTTGTCTCATTTTTTCAAATTTACTTTATGGTCCCAATTTTATGACTCTTCATCTTTGATCAATTGATTCCGCTGGGAGTTGAAAATTATGGTCTTGAAGGTGGCCTAGATTATTGCAAGCAGTTGAGCTTATCGCCAACTACTCTGCATATTTCTCGTTGGCTTAAATGACTAAAGTGTATAAAGACGGATGTTATAGTTACATTATAATGAACTAAGGAAAGAAAGCAACCTTAAGGGGAAGGAACCATTGCGGACGAATGTAATAAGAATATGCTTAATCCAAAAAAATTTAGCTTCATTATACCTTTATGTCAGGCTCATATATACCAATTTAAGCACAATCAAGAGAATATGAATGCCTACTCCAGGATGGGTAAGAAGGGCAGTAACCACCAGACAGTTAGTGGGAGGTTATGTACGGTTGTTGGGCATGAGATTGAGCTAGGCCTTTAAGTGTCAGGTTGTGTTTTAGGCAGGGGCATGGAATCTTTTGTAATAGGGCAGCCTTCTAAGGTTTTGAAGAGTTTGCTACCCCATTGAATTGGGCGGTTTATGTTCTTCTTGTTTCTCAATGGTGTTAACTTGAATTCAATCAAATAGCGAGGGAATACCCTTATGGAGAATAAGTGGATTGCCGTTTTTAGTGTTCTCCCTGCCTTTTAGATGGTGGGGTTTGTTTCATCTGTATATCACTTTGTCATGACATCCACTTGGGTTTGCTGTAACTTGTCATGAAGAATAGGTTCATGAATCTTTTAGAATCATGAACAATTGTGCTACATTCCCCTCTCCTATATATTGGAATTTATTTGGCTCATCTCCCATTCATTTGGTTCATCTCCAATTTTTGATACACGAATCATCTTGATTCATGTATGACACTAATGCTTTTATGCCTATATAAAGGGTTGTCTAAGATGGTTGAGAGAGACATTGAGTTCGATTGAGTTTGAGTGTCATTTTGGGAGGAACTTTATTGAGAGATACTACATGTAAAAGTGTGAGATATACACTCTGTAAACACTTCGATTATTGAGATTGGTTGCTGTCTGTAGAGGTAGAGGAATGTCTTCTCTACAAACCACGTAAATTTTTGTCTCTTTGTTTAATTTTTGTTTTGTGGATATGCGAGTGCGATCGATCTCGCTTCTGCTTCCGTTACAACACTTGTATCTCTTTAAATTTTCTAGTTATGAGGTAAGGGTAATTTCCAGCACCAACATCATCTGAACATAGTTCTCTGGAAATGCTTCGATGCTTGCAAATTGCACAAGTTGTACAGTACATATATATGAATTGATCTTCCTGTTGTAATTCCTCATAAGCGGTATTCAAATCTGTTCTGCAGGCAACTTGCGGATTTTTCCAGTGGTGCAAGGAGGCATCCATGGCAGCCAAGAATCAAGTGAGTGGCTCTAAGGTCTACGGCAACACAACCGACACAAGCAAAGGCATGCCTGCGACTGCAAGGGCGGGTTCTTCCTGTTATAAATGTGGGGGCGAAGGGCATTGGGCTAGAGATTGCTCGCAATCACTCGCACCATCAAACCAATCTTCTTCAGCTGGAAGCTGTTTCAAATGTGGGAAGCCTGGCCATTGGGCGAGGGACTGTTCTAATTGTTAA

mRNA sequence

TTATTTTTTGATAATTCTAACCTAAACGAAATTATACCCAAGGCGGGAAGCAAAACGATAGAAGAAAAAGAGGCAAATTTCAAAACCGAGTTCGATCGCGGAGGGAGAGAGATGAAATTCGAAGCTAAGAGGAATTTTGATTTCGATCTCGGAGATGACGACGACGACGAGGATTTTCTTTCGGAGGTGGCCGCGGCGGAAGCTCGTGCCCTAGCTAGTAAACGTAGAAAAATCCCCAATCATACCATCGATCCGCCCAAAAGAGCGATCGCGGAGGTTACGAGCAAAGTTTCCCCTAACGCAGATGCGGAAGGGATCTACATCGCCGCTTTGAAAGGAGACCCTATTATCCTCTCGCAACTTTCTGGTCGGATAGCCAATTCTGGAAATAAAGGGTTCATCTCTGCGAATACTACTGCTCATGCTCAATCGGAGGGTGGTGGCTCGTGTTTTAAATGCGGGAAATTAGGGCATTGGGCTAGAGACTGCGATGCTCCGGGAAGTGGAGGGTCTTTCAGCTTTTCAGGAAATGATACGTCTGTGGCCGAGAAATCATGCCCCTGCGGAATGGGAGTATGTGTAGTACTAACTGCGAATACGGAGAGGAATCGAGGTCGAAAATTTTACAAATGTCCCGTTCGACAGGAAAATGGTGGCTGCGGATTCTTTGAGTGGTGTGACAATGCCTCTGCAACTAATATAATGACTTATGGAAGCCAAAATCGTGCATCAAGTTCTTCATTTTCAGACCTTAAGTGCCCCTGTGGTGCTGGTTCTTGCATAACTCTAACAGCCAAAACAGGGGAAAATGTGGGGCAGCAATTCTATCGTTGCCCTTCATACCAGGCAACTTGCGGATTTTTCCAGTGGTGCAAGGAGGCATCCATGGCAGCCAAGAATCAAGTGAGTGGCTCTAAGGTCTACGGCAACACAACCGACACAAGCAAAGGCATGCCTGCGACTGCAAGGGCGGGTTCTTCCTGTTATAAATGTGGGGGCGAAGGGCATTGGGCTAGAGATTGCTCGCAATCACTCGCACCATCAAACCAATCTTCTTCAGCTGGAAGCTGTTTCAAATGTGGGAAGCCTGGCCATTGGGCGAGGGACTGTTCTAATTGTTAA

Coding sequence (CDS)

ATGAAATTCGAAGCTAAGAGGAATTTTGATTTCGATCTCGGAGATGACGACGACGACGAGGATTTTCTTTCGGAGGTGGCCGCGGCGGAAGCTCGTGCCCTAGCTAGTAAACGTAGAAAAATCCCCAATCATACCATCGATCCGCCCAAAAGAGCGATCGCGGAGGTTACGAGCAAAGTTTCCCCTAACGCAGATGCGGAAGGGATCTACATCGCCGCTTTGAAAGGAGACCCTATTATCCTCTCGCAACTTTCTGGTCGGATAGCCAATTCTGGAAATAAAGGGTTCATCTCTGCGAATACTACTGCTCATGCTCAATCGGAGGGTGGTGGCTCGTGTTTTAAATGCGGGAAATTAGGGCATTGGGCTAGAGACTGCGATGCTCCGGGAAGTGGAGGGTCTTTCAGCTTTTCAGGAAATGATACGTCTGTGGCCGAGAAATCATGCCCCTGCGGAATGGGAGTATGTGTAGTACTAACTGCGAATACGGAGAGGAATCGAGGTCGAAAATTTTACAAATGTCCCGTTCGACAGGAAAATGGTGGCTGCGGATTCTTTGAGTGGTGTGACAATGCCTCTGCAACTAATATAATGACTTATGGAAGCCAAAATCGTGCATCAAGTTCTTCATTTTCAGACCTTAAGTGCCCCTGTGGTGCTGGTTCTTGCATAACTCTAACAGCCAAAACAGGGGAAAATGTGGGGCAGCAATTCTATCGTTGCCCTTCATACCAGGCAACTTGCGGATTTTTCCAGTGGTGCAAGGAGGCATCCATGGCAGCCAAGAATCAAGTGAGTGGCTCTAAGGTCTACGGCAACACAACCGACACAAGCAAAGGCATGCCTGCGACTGCAAGGGCGGGTTCTTCCTGTTATAAATGTGGGGGCGAAGGGCATTGGGCTAGAGATTGCTCGCAATCACTCGCACCATCAAACCAATCTTCTTCAGCTGGAAGCTGTTTCAAATGTGGGAAGCCTGGCCATTGGGCGAGGGACTGTTCTAATTGTTAA

Homology

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BLAST of CmoCh16G005210 vs. Swiss-Prot
Match: CSP3_ARATH (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.5e-10
Identity = 70/256 (27.34%), Postives = 92/256 (35.94%), Query Frame = 1


Query: 98  SANTTAHAQSEGGGSCFKCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEKSCPCGMGVCV 157
           S N   ++    GG+CF CG++GH A+DCD    G SF   G   S  E  C        
Sbjct: 81  SLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGEC-------- 140

Query: 158 VLTANTERNRGRKFYKCPVRQENGGCGFFEW-CDNASATNIMTYGSQNRA--SSSSFSDL 217
                         Y C      G  G F   C  +   N    G   R   S      L
Sbjct: 141 --------------YMC------GDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHL 200

Query: 218 KCPCGAGSCITLTAKTGE--NVGQQFYRCPSYQATCGFFQWCKEASMAAKNQVSGSKVYG 277
              C  GS        G   + G   Y C       G   + ++        V G    G
Sbjct: 201 AKDCRGGSGGNRYGGGGGRGSGGDGCYMCG------GVGHFARDCRQNGGGNVGGG---G 260

Query: 278 NTTDTSKGMPATARA------------GSSCYKCGGEGHWARDCS-QSLAPSNQSSSAGS 336
           +T  T  G+   A+             G +CY+CGG GH ARDC  +    S     +  
Sbjct: 261 STCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNK 299

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BLAST of CmoCh16G005210 vs. Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-07
Identity = 63/252 (25.00%), Postives = 93/252 (36.90%), Query Frame = 1


Query: 106 QSEGGGSCFKCGKLGHWARDCDAPGSGG----SFSFSGNDTSVAEKSCP--CGMGVCVVL 165
           ++E   SC  CGK GH+AR+C    S G    +  F   +     + CP     G    +
Sbjct: 11  RTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAM 70

Query: 166 TANTERNRGRKFYKCPVRQENGGCGFFEW------------CDNASATNIMTYGSQNRAS 225
           T       G     CP   + G    FE             C ++   +   YG +   S
Sbjct: 71  TCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRS 130

Query: 226 SSS---FSDLKC-PCGAGSCITLTAKTGENVGQQFYRCPSYQATCGFFQWCKEASMAAKN 285
            +      D  C  CG    I+     G+           Y+        C +A   +++
Sbjct: 131 GAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYK--------CGDAGHISRD 190

Query: 286 QVSGSKVYGNTTDTSKGMPATARAGSSCYKCGGEGHWARDCSQSLAPSNQSSSAG--SCF 334
             +G   Y    D              CYKCG  GH +R+C     PS  S+ +G  +C+
Sbjct: 191 CPNGQGGYSGAGDRK------------CYKCGESGHMSREC-----PSAGSTGSGDRACY 237

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BLAST of CmoCh16G005210 vs. Swiss-Prot
Match: GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-06
Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 1


Query: 288 GSSCYKCGGEGHWARDCSQS--------LAPSNQSSSAGSCFKCGKPGHWARDCSN 336
           GS C+KCG  GH+ARDCSQS                  G C+KCG+ GH+AR+C++
Sbjct: 156 GSGCFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHFARECTS 211

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BLAST of CmoCh16G005210 vs. Swiss-Prot
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-06
Identity = 71/245 (28.98%), Postives = 91/245 (37.14%), Query Frame = 1


Query: 109 GGGSCFKCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRG 168
           GG  C+ CG+LGH ++DC            G      E+    G G              
Sbjct: 98  GGSGCYNCGELGHISKDCGI----------GGGGGGGERRSRGGEGC------------- 157

Query: 169 RKFYKCPVRQENGGCGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCG-----AGSC 228
              Y C      G  G F   D  SA N    G Q R ++   +D    CG     A  C
Sbjct: 158 ---YNC------GDTGHFAR-DCTSAGN----GDQ-RGATKGGNDGCYTCGDVGHVARDC 217

Query: 229 ITLTAKTGENVG------QQFYRCPSYQATCGFFQWCKEASMAAKNQVSGSKVYGNTTDT 288
              +   G+  G         Y C       G F       +AA N  SG    G T  +
Sbjct: 218 TQKSVGNGDQRGAVKGGNDGCYTC----GDVGHFARDCTQKVAAGNVRSGGGGSG-TCYS 277

Query: 289 SKGMPATAR-------AGSSCYKCGGEGHWARDCSQSLAPSNQSSSAGSCFKCGKPGHWA 336
             G+   AR           CY+CGG GH ARDC Q    S    +  +C+KCGK GH+A
Sbjct: 278 CGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ--RGSGGGGNDNACYKCGKEGHFA 297

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BLAST of CmoCh16G005210 vs. Swiss-Prot
Match: TOP3A_ORYSJ (DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica GN=TOP3A PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.1e-06
Identity = 33/84 (39.29%), Postives = 40/84 (47.62%), Query Frame = 1


Query: 138 SGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDNASATNI 197
           SGN +   +  C      CV+ TANTE NRGRKFYKC    +N  CGFF W D+   +  
Sbjct: 799 SGNASGQVQ--CTSCREPCVLRTANTEANRGRKFYKC----QNLACGFFAWEDDVENSAP 858

Query: 198 MTYGSQNRASSSSFSDLKCPCGAG 222
              G + R   SS         AG
Sbjct: 859 RGRGGRGRGGRSSSRQSSASASAG 876

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BLAST of CmoCh16G005210 vs. TrEMBL
Match: A0A0A0KVB6_CUCSA (DNA topoisomerase OS=Cucumis sativus GN=Csa_4G062410 PE=3 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 6.3e-112
Identity = 215/318 (67.61%), Postives = 237/318 (74.53%), Query Frame = 1


Query: 28  AAEARALASKRRKIPNHTIDPPKRAIAEVTSKVSPNADAEGIYIAALKGDPIILSQLSGR 87
           AAE  +L  K R +PN TID PK A+AEV+ KV  NAD  G YIA  KG    LSQ+SG 
Sbjct: 11  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTYIAPYKGSRA-LSQISGS 70

Query: 88  IANSGNKGFISANTTAHAQSEGGGSCFKCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEK 147
            A+S     I  NTTA  QSEG GSCFKCGKLGHWARDCDAPG GGSFS SGND SV +K
Sbjct: 71  EASSDKNVSIYENTTA--QSEGDGSCFKCGKLGHWARDCDAPGGGGSFSSSGNDMSVPDK 130

Query: 148 SCPCGMGVCVVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDNASATNIMTYGSQNRAS 207
           +CPCG G+C VLTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS  N+++YGSQN  S
Sbjct: 131 ACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLS 190

Query: 208 SSSFSDLKCPCGAGSCITLTAKTGENVGQQFYRCPSYQATCGFFQWCKEASMAAKNQVSG 267
            SSFSDL+CPCGAGSC  LTAKTG NVG+QFY CPS QA+C FF+WC+E SM  KNQ S 
Sbjct: 191 -SSFSDLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQEST 250

Query: 268 SKVYGNTTDTSKGMPATAR--AGSSCYKCGGEGHWARDCSQSLAPS--------NQSSSA 327
            KVYGNT DTSK      +  + SS YK G EGHWARD SQS + S        +QSSSA
Sbjct: 251 PKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGRSQSSSA 310

Query: 328 GSCFKCGKPGHWARDCSN 336
           GSCFKCG PGHWARDCSN
Sbjct: 311 GSCFKCGMPGHWARDCSN 324

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BLAST of CmoCh16G005210 vs. TrEMBL
Match: W9SC70_9ROSA (DNA topoisomerase OS=Morus notabilis GN=L484_017710 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.5e-89
Identity = 187/352 (53.12%), Postives = 234/352 (66.48%), Query Frame = 1


Query: 1   MKFEAKRNFDFDLGDDDDDEDFLSEVAAAEARALASKRRKIPNHTIDPPKRAIAEVTSKV 60
           MK EAKR+   ++  +DDDEDF S++AA EA ALAS +R+     I P   A+     K 
Sbjct: 1   MKIEAKRSV-IEI-QEDDDEDFFSQLAAVEADALASSKRR----RITPSVNAVVPNPKKE 60

Query: 61  SPNADAEGIYIAALKGDPIILSQLS-GRIANSGNKGFISA------NTTAHAQSEGGGSC 120
              A  EG+Y+AALKG+  ++ Q + GR+     KG + A      +    + S  G SC
Sbjct: 61  ISAAADEGLYMAALKGNQSLVRQTTAGRVGVP--KGRVKAVDAEKDDVFGSSGSGAGNSC 120

Query: 121 FKCGKLGHWARDCD-APGSGGS---FSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRGR 180
           FKCGK GHWARDCD APG GG       +G+D S+ EKSCPCG+G+C VLTANTE+NRGR
Sbjct: 121 FKCGKSGHWARDCDSAPGGGGGQYGTHGAGSDPSIPEKSCPCGLGICTVLTANTEKNRGR 180

Query: 181 KFYKCPVRQENGGCGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAK 240
           KFYKCP+RQENGGCGFFEWCDNAS  N M  G  N  S SSF    CPCGAG C+ LTAK
Sbjct: 181 KFYKCPLRQENGGCGFFEWCDNASGNNSMAGG--NYTSDSSFPGRPCPCGAGLCLILTAK 240

Query: 241 TGENVGQQFYRCPSYQ-ATCGFFQWCKEASMAAKNQVSGSKVYGNTTDTSKGMPATARAG 300
           TG+N+GQQFYRCP+ Q ++CGFF+WC E + +    VS    + N+ DT+       R G
Sbjct: 241 TGQNIGQQFYRCPANQGSSCGFFKWCNENTTSIGVPVSNPNAFYNSIDTN-NTSYNVRTG 300

Query: 301 SSCYKCGGEGHWARDCS-QSLAPS----NQSSSAGSCFKCGKPGHWARDCSN 336
           SSC+KCG EGHWARDCS  S  P+     +S+S+G+C+KCGKPGHW+RDCS+
Sbjct: 301 SSCFKCGKEGHWARDCSVPSSNPAAELGGRSASSGTCYKCGKPGHWSRDCSS 341

[Close]

BLAST of CmoCh16G005210 vs. TrEMBL
Match: M5X3H0_PRUPE (DNA topoisomerase OS=Prunus persica GN=PRUPE_ppa020564mg PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 7.2e-84
Identity = 184/352 (52.27%), Postives = 218/352 (61.93%), Query Frame = 1


Query: 18  DDEDFLSEVAAAEARALASKRRKI-----PNHTIDPPKRAIAEVTSKVSPNADAEGIYIA 77
           +D+DFLS+VAAAEA+ALASKRR+I     PN  +    RA      K   +++  GIY A
Sbjct: 13  EDDDFLSQVAAAEAQALASKRRRISIAPSPNSAVSFHSRA----NHKEGLDSEDGGIYTA 72

Query: 78  ALKG------DPIILSQLSGRI--ANSGNKGFISANTTAHAQSEGGGSCFKCGKLGHWAR 137
           ALKG      +P      +GR+    +GN G           S GGGSCFKCGK GHWAR
Sbjct: 73  ALKGSQRAAPEPPRGGFSTGRVNVGRTGNDGI----------SAGGGSCFKCGKPGHWAR 132

Query: 138 DCDAPGSGGSFSFSGNDTS----VAEKSCPCGMGVCVVLTANTERNRGRKFYKCPVRQEN 197
           DCD  G G   +  G D+S    V EKSCPCG G C+VLTANTE+NRGRKFYKCP+RQEN
Sbjct: 133 DCDVTGGGYYGNSGGGDSSASISVPEKSCPCGFGACMVLTANTEKNRGRKFYKCPLRQEN 192

Query: 198 GGCGFFEWCDNASATNIMT-----YGSQNR-----ASSSSFSDLKCPCGAGSCITLTAKT 257
           GGCGFFEWCDNAS  N+M       GS  R     AS SSF  L+CPCG G C+ LTAKT
Sbjct: 193 GGCGFFEWCDNASGPNVMASTGMGSGSATRTHSYAASDSSFPALECPCGGGLCLILTAKT 252

Query: 258 GENVGQQFYRCPSYQATCGFFQWCKEASMAAKNQVSGS--KVYGNTTDTSKGMPATARAG 317
           G+N+G QFYRCP+ +  CGFF+WC E + AA   + GS  KV       +       R G
Sbjct: 253 GKNIGSQFYRCPANEG-CGFFKWCNEHTGAAAGVLGGSAAKVERKVLSEASNNGFGVRTG 312

Query: 318 SSCYKCGGEGHWARDC---SQSLAP----SNQSSSAGSCFKCGKPGHWARDC 334
           SSC+KCG EGHWARDC       AP    +  ++S GSC+KCGKPGHWARDC
Sbjct: 313 SSCFKCGKEGHWARDCPAVPSYNAPVELEARSAASPGSCYKCGKPGHWARDC 349

[Close]

BLAST of CmoCh16G005210 vs. TrEMBL
Match: M1CMN8_SOLTU (DNA topoisomerase OS=Solanum tuberosum GN=PGSC0003DMG400027518 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 4.5e-78
Identity = 158/341 (46.33%), Postives = 214/341 (62.76%), Query Frame = 1


Query: 18  DDEDFLSEVAAAEARAL--ASKRRKIPNHTIDPPKRAIAEVTSKVSPNADA--------- 77
           +DE+FLS+VAAAEA AL  A+KRR+I          A+A  T+  +P  +          
Sbjct: 5   EDEEFLSQVAAAEAEALSTAAKRRRI--------SAAVATTTAVTTPKFNVNTNNNTSVE 64

Query: 78  EGIYIAALKGDPIILSQLSGR---IANSGNKGFISANTTAHAQSEGGGSCFKCGKLGHWA 137
           EG+Y+A LKG+  +L Q  G     +   N  + + ++   + S+ G SCFKCGK GHW+
Sbjct: 65  EGVYLAVLKGNKSVLFQQKGSTNAFSTPINNNYKANSSNNWSSSDAGDSCFKCGKSGHWS 124

Query: 138 RDCDA-PGSGGSFSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYKCPVRQENGG 197
           RDCD  P +  S SF        EK C CGMG C+VLTANTE+NRGRKFYKCP+RQENGG
Sbjct: 125 RDCDTNPPTDDSVSFP-------EKKCACGMGSCLVLTANTEKNRGRKFYKCPIRQENGG 184

Query: 198 CGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGENVGQQFYRCP 257
           CGFFEWCD    T+ +T    + + SS+F +L CPCG+G+C+ LTAKTG+N+GQQFYRCP
Sbjct: 185 CGFFEWCDQPPVTDSLTTRGPSYSVSSTFQELSCPCGSGTCLVLTAKTGKNIGQQFYRCP 244

Query: 258 SYQATCGFFQWCKEASMAA--KNQVSGSKVYGNTTDTSKGMPATARAGSSCYKCGGEGHW 317
           + Q  CGFF+WC + +  A   N  + S+ Y     ++  +  +    +SC+KCG  GHW
Sbjct: 245 TNQGGCGFFKWCNDNTTNASFSNSSNSSQTYPKMDGSTNKINNSV---TSCFKCGNAGHW 304

Query: 318 ARDCSQSLAPSN------QSSSAGSCFKCGKPGHWARDCSN 336
           A+DC QS +  +      Q S++ +CF CGKPGHWA+DCS+
Sbjct: 305 AKDCPQSSSQRSAADGGIQYSNSSTCFNCGKPGHWAKDCSS 327

[Close]

BLAST of CmoCh16G005210 vs. TrEMBL
Match: A0A0V0HP49_SOLCH (DNA topoisomerase OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 160/336 (47.62%), Postives = 212/336 (63.10%), Query Frame = 1


Query: 18  DDEDFLSEVAAAEARAL--ASKRRKI-PNHTIDPPKRAIAEVTSKVSPNADA---EGIYI 77
           +DE+FLS+VAAAEA AL  A+KRR+I  + T      A+      V+ N +    EG Y+
Sbjct: 5   EDEEFLSQVAAAEAEALSTAAKRRRISASETTTTTTTAVTTPKFNVNTNNNTSVEEGAYL 64

Query: 78  AALKGDPIILSQLSG---RIANSGNKGFISANTTAHAQSEGGGSCFKCGKLGHWARDCDA 137
           A LKG+  +L Q  G     +   N  + + ++   + S+ G SCFKCGK GHWARDCD 
Sbjct: 65  AVLKGNKSVLFQQKGSTNTFSTPINNNYKANSSNNWSSSDAGDSCFKCGKSGHWARDCDT 124

Query: 138 -PGSGGSFSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYKCPVRQENGGCGFFE 197
            P +  S SF        EK C CGMG C+VLTANTE+NRGRKFYKCP+RQENGGCGFFE
Sbjct: 125 NPSTDDSVSF-------PEKICACGMGSCLVLTANTEKNRGRKFYKCPIRQENGGCGFFE 184

Query: 198 WCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGENVGQQFYRCPSYQAT 257
           WCD    T+ +T    +   SS+F +L CPCG+G+C+ LTAKTG+N+GQQFYRCPS    
Sbjct: 185 WCDQPPVTDSLTTRGPSYTVSSTFPELSCPCGSGTCLVLTAKTGKNIGQQFYRCPSNLGG 244

Query: 258 CGFFQWCKEASMAA--KNQVSGSKVYGNTTDTSKGMPATARAGSSCYKCGGEGHWARDCS 317
           CGFF+WC + +  A   N  + S+ Y     ++  +  +    +SC+KCG  GHWA+DC 
Sbjct: 245 CGFFKWCNDNTTNASFSNSSNSSQTYPKMDGSTNKINNSV---TSCFKCGNAGHWAKDCP 304

Query: 318 QSLAPSN------QSSSAGSCFKCGKPGHWARDCSN 336
           QS +  +      Q S++ +CFKCGKPGHWA+DCS+
Sbjct: 305 QSSSQRSAADGGIQYSNSSTCFKCGKPGHWAKDCSS 330

[Close]

BLAST of CmoCh16G005210 vs. TAIR10
Match: AT3G42860.1 (AT3G42860.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-64
Identity = 136/322 (42.24%), Postives = 184/322 (57.14%), Query Frame = 1


Query: 17  DDDEDFLSEVAAAEARALASKRRKIPNHTIDPPKRAIAEVTSKVSPNADAEGIYIAALKG 76
           D+++DFL ++AA EA A A+KR ++                     ++  EG Y+AALKG
Sbjct: 12  DEEDDFLLQLAAIEAEA-AAKRPRV---------------------SSIPEGPYMAALKG 71

Query: 77  DPIILSQLSGRIANSGNKGFISANTTAHAQSEGGGSCFKCGKLGHWARDCDAPGSGGSFS 136
                 Q S     S ++  ++  T    +S+GGG                  G  G   
Sbjct: 72  SKSDQWQQSPLNPASKSRS-VAVTTGGFQRSDGGG------------------GVAGEQD 131

Query: 137 FSGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYKCPVRQENGGCGFFEWCD--NASA 196
           F        EKSCPCG+G+C++LT+NT +N GRKFYKCP R+ENGGCGFF+WCD   +S 
Sbjct: 132 FP-------EKSCPCGVGICLILTSNTPKNPGRKFYKCPNREENGGCGFFQWCDAVQSSG 191

Query: 197 TNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGENVGQQFYRCPSYQATCGFFQWC 256
           T+  T  S    + + F D +CPCGAG C  LTAKTGENVG+QFYRCP ++ +CGFF+WC
Sbjct: 192 TSTTTSNSYGNGNDTKFPDHQCPCGAGLCRVLTAKTGENVGRQFYRCPVFEGSCGFFKWC 251

Query: 257 KEASMAAKNQVSGSKVYGNTTDTSKGMPATARAGSSCYKCGGEGHWARDCS--QSLAPSN 316
            +  +++    S +K   N  D+       A+ G+ CYKCG EGHWARDC+      P  
Sbjct: 252 NDNVVSSPTSYSVTK-NSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVK 284

Query: 317 QSSSAGSCFKCGKPGHWARDCS 335
            +S+AG CFKCGKPGHW+RDC+
Sbjct: 312 STSAAGDCFKCGKPGHWSRDCT 284

[Close]

BLAST of CmoCh16G005210 vs. TAIR10
Match: AT5G13920.1 (AT5G13920.1 GRF zinc finger / Zinc knuckle protein)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-17
Identity = 51/145 (35.17%), Postives = 65/145 (44.83%), Query Frame = 1


Query: 111 GSCFKCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRGRK 170
           G CF+C + GHW  DC           S  D       CPCG G C +  ANT  N GRK
Sbjct: 9   GDCFRCRQAGHWINDCPLK--------SYTDDPPPAIQCPCGGGFCEIKVANTRENPGRK 68

Query: 171 FYKCPVRQENGGCGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKT 230
           FYKCP  Q    C FF+WCD  +  +I            +F+   C CGAG C     + 
Sbjct: 69  FYKCPTAQ---NCCFFKWCDKVTDEDI--------KFRPAFTIPICSCGAGPC----RRV 128

Query: 231 GENVGQQFYRCPSYQ--ATCGFFQW 254
            +  G+ +  C   +    CGFF+W
Sbjct: 129 KDVSGRAYLICCIKKGFGACGFFKW 130

[Close]

BLAST of CmoCh16G005210 vs. TAIR10
Match: AT2G17870.1 (AT2G17870.1 cold shock domain protein 3)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-11
Identity = 70/256 (27.34%), Postives = 92/256 (35.94%), Query Frame = 1


Query: 98  SANTTAHAQSEGGGSCFKCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEKSCPCGMGVCV 157
           S N   ++    GG+CF CG++GH A+DCD    G SF   G   S  E  C        
Sbjct: 81  SLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGEC-------- 140

Query: 158 VLTANTERNRGRKFYKCPVRQENGGCGFFEW-CDNASATNIMTYGSQNRA--SSSSFSDL 217
                         Y C      G  G F   C  +   N    G   R   S      L
Sbjct: 141 --------------YMC------GDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHL 200

Query: 218 KCPCGAGSCITLTAKTGE--NVGQQFYRCPSYQATCGFFQWCKEASMAAKNQVSGSKVYG 277
              C  GS        G   + G   Y C       G   + ++        V G    G
Sbjct: 201 AKDCRGGSGGNRYGGGGGRGSGGDGCYMCG------GVGHFARDCRQNGGGNVGGG---G 260

Query: 278 NTTDTSKGMPATARA------------GSSCYKCGGEGHWARDCS-QSLAPSNQSSSAGS 336
           +T  T  G+   A+             G +CY+CGG GH ARDC  +    S     +  
Sbjct: 261 STCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNK 299

[Close]

BLAST of CmoCh16G005210 vs. TAIR10
Match: AT3G43590.1 (AT3G43590.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 58.5 bits (140), Expect = 8.9e-09
Identity = 56/241 (23.24%), Postives = 88/241 (36.51%), Query Frame = 1


Query: 109 GGGSCFKCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRG 168
           G  SC+ CG+ GH + +C  P       F         K C  G    +       +  G
Sbjct: 164 GWVSCYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHDCYIC------KKTG 223

Query: 169 RKFYKCPVRQENGGCGFFEW-CDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLT 228
            +   CP + +NG  G     C +     I+    +   S     D++C           
Sbjct: 224 HRAKDCPDKYKNGSKGAVCLRCGDFGHDMILC---KYEYSKEDLKDVQC----------- 283

Query: 229 AKTGENVGQQFYRCPSYQATC-----GFFQW---CKEASMAAKNQVSGSKVYGNTTDTSK 288
                      Y C S+   C         W   C        + ++  + Y  + +   
Sbjct: 284 -----------YICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDS 343

Query: 289 GMPA---TARAGSSCYKCGGEGHWARDC--SQSLAPSNQSSSAGSCFKCGKPGHWARDCS 336
             P     +R  S CY+CG EGH+AR+C  S S++ S+   S   C++C   GH+AR+C 
Sbjct: 344 ATPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECP 373

[Close]

BLAST of CmoCh16G005210 vs. TAIR10
Match: AT1G54930.1 (AT1G54930.1 GRF zinc finger / Zinc knuckle protein)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-08
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 1


Query: 188 WCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGENVGQQFYRCPSYQAT 247
           W  N     + T      A++ S  D+ CPC AG C T+T+KT +N  ++FY CPS    
Sbjct: 15  WAKNCP---LKTTTKPTAAAAPSPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCPS---- 74

Query: 248 CGFFQWCKE 257
           CG+F+WC +
Sbjct: 75  CGYFKWCDQ 76

[Close]

BLAST of CmoCh16G005210 vs. NCBI nr
Match: gi|449460018|ref|XP_004147743.1| (PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus])

HSP 1 Score: 412.1 bits (1058), Expect = 9.0e-112
Identity = 215/318 (67.61%), Postives = 237/318 (74.53%), Query Frame = 1


Query: 28  AAEARALASKRRKIPNHTIDPPKRAIAEVTSKVSPNADAEGIYIAALKGDPIILSQLSGR 87
           AAE  +L  K R +PN TID PK A+AEV+ KV  NAD  G YIA  KG    LSQ+SG 
Sbjct: 11  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTYIAPYKGSRA-LSQISGS 70

Query: 88  IANSGNKGFISANTTAHAQSEGGGSCFKCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEK 147
            A+S     I  NTTA  QSEG GSCFKCGKLGHWARDCDAPG GGSFS SGND SV +K
Sbjct: 71  EASSDKNVSIYENTTA--QSEGDGSCFKCGKLGHWARDCDAPGGGGSFSSSGNDMSVPDK 130

Query: 148 SCPCGMGVCVVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDNASATNIMTYGSQNRAS 207
           +CPCG G+C VLTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS  N+++YGSQN  S
Sbjct: 131 ACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGSQNPLS 190

Query: 208 SSSFSDLKCPCGAGSCITLTAKTGENVGQQFYRCPSYQATCGFFQWCKEASMAAKNQVSG 267
            SSFSDL+CPCGAGSC  LTAKTG NVG+QFY CPS QA+C FF+WC+E SM  KNQ S 
Sbjct: 191 -SSFSDLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETKNQEST 250

Query: 268 SKVYGNTTDTSKGMPATAR--AGSSCYKCGGEGHWARDCSQSLAPS--------NQSSSA 327
            KVYGNT DTSK      +  + SS YK G EGHWARD SQS + S        +QSSSA
Sbjct: 251 PKVYGNTNDTSKSATLNVKTSSSSSSYKYGSEGHWARDWSQSPSSSTSPAEYGRSQSSSA 310

Query: 328 GSCFKCGKPGHWARDCSN 336
           GSCFKCG PGHWARDCSN
Sbjct: 311 GSCFKCGMPGHWARDCSN 324

[Close]

BLAST of CmoCh16G005210 vs. NCBI nr
Match: gi|1009173363|ref|XP_015867777.1| (PREDICTED: DNA-binding protein HEXBP-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 348.6 bits (893), Expect = 1.2e-92
Identity = 186/349 (53.30%), Postives = 225/349 (64.47%), Query Frame = 1


Query: 1   MKFEAKRNFDFDLGDDDDDEDFLSEVAAAEARALASKRRKIP-NHTIDPPKRAIAEVTSK 60
           MK EAK++F     DDDDD+DFLS+VAA EA ALA+KRRK+  +     P      + +K
Sbjct: 1   MKIEAKKSFIEIQDDDDDDDDFLSQVAAVEAHALANKRRKVTLSQNAAVPNSRANHIQAK 60

Query: 61  VSPNADAEGIYIAALKGDPIILSQLSGRIANSGNKGFISANTTAHA---QSEGGGSCFKC 120
              +A  +G+Y AALKG+  +  Q +        K   + N        +S  G SCFKC
Sbjct: 61  --DDAMVDGLYTAALKGNKTLNLQSTSSHPGRRVKVVATENDNVFGGDHRSNDGNSCFKC 120

Query: 121 GKLGHWARDCDAPGSGGS-FSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYKCP 180
           GK+GHWARDCDA G GG  F     D S+ EK+CPCG G C+VLTANTE+NRGRKFYKCP
Sbjct: 121 GKVGHWARDCDATGGGGGQFGNYVGDPSIPEKTCPCGSGTCLVLTANTEKNRGRKFYKCP 180

Query: 181 VRQENGGCGFFEWCDNASATNIMTYG--SQNRASSSSFSDLKCPCGAGSCITLTAKTGEN 240
           +RQENGGCGFFEW DNAS  N M  G    N AS SS+ DL+CPCGAG C+ LTAKTG+N
Sbjct: 181 IRQENGGCGFFEWVDNASGANFMAGGETQNNYASDSSYPDLQCPCGAGFCLILTAKTGKN 240

Query: 241 VGQQFYRCP-SYQATCGFFQWCKEASMAAKNQVSGSKVYGNTTDTSKGMPATARAGSSCY 300
           VG+QFYRCP S   +C FF+WC E++ +A   VS SK + N     K    + R GSSC+
Sbjct: 241 VGRQFYRCPLSQGGSCNFFKWCNESTASAGLPVSASKAHYNNASDEKNKSYSVRTGSSCF 300

Query: 301 KCGGEGHWARDCS-----QSLAPSNQSSSAGSCFKCGKPGHWARDCSNC 337
           KCG EGHWA+DCS      S     +S S G+C KCGKPGHWARDCS C
Sbjct: 301 KCGKEGHWAKDCSIPSINSSTGFGGRSVSLGTCSKCGKPGHWARDCSFC 347

[Close]

BLAST of CmoCh16G005210 vs. NCBI nr
Match: gi|703161752|ref|XP_010112874.1| (DNA topoisomerase 3-alpha [Morus notabilis])

HSP 1 Score: 337.8 bits (865), Expect = 2.2e-89
Identity = 187/352 (53.12%), Postives = 234/352 (66.48%), Query Frame = 1


Query: 1   MKFEAKRNFDFDLGDDDDDEDFLSEVAAAEARALASKRRKIPNHTIDPPKRAIAEVTSKV 60
           MK EAKR+   ++  +DDDEDF S++AA EA ALAS +R+     I P   A+     K 
Sbjct: 1   MKIEAKRSV-IEI-QEDDDEDFFSQLAAVEADALASSKRR----RITPSVNAVVPNPKKE 60

Query: 61  SPNADAEGIYIAALKGDPIILSQLS-GRIANSGNKGFISA------NTTAHAQSEGGGSC 120
              A  EG+Y+AALKG+  ++ Q + GR+     KG + A      +    + S  G SC
Sbjct: 61  ISAAADEGLYMAALKGNQSLVRQTTAGRVGVP--KGRVKAVDAEKDDVFGSSGSGAGNSC 120

Query: 121 FKCGKLGHWARDCD-APGSGGS---FSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRGR 180
           FKCGK GHWARDCD APG GG       +G+D S+ EKSCPCG+G+C VLTANTE+NRGR
Sbjct: 121 FKCGKSGHWARDCDSAPGGGGGQYGTHGAGSDPSIPEKSCPCGLGICTVLTANTEKNRGR 180

Query: 181 KFYKCPVRQENGGCGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAK 240
           KFYKCP+RQENGGCGFFEWCDNAS  N M  G  N  S SSF    CPCGAG C+ LTAK
Sbjct: 181 KFYKCPLRQENGGCGFFEWCDNASGNNSMAGG--NYTSDSSFPGRPCPCGAGLCLILTAK 240

Query: 241 TGENVGQQFYRCPSYQ-ATCGFFQWCKEASMAAKNQVSGSKVYGNTTDTSKGMPATARAG 300
           TG+N+GQQFYRCP+ Q ++CGFF+WC E + +    VS    + N+ DT+       R G
Sbjct: 241 TGQNIGQQFYRCPANQGSSCGFFKWCNENTTSIGVPVSNPNAFYNSIDTN-NTSYNVRTG 300

Query: 301 SSCYKCGGEGHWARDCS-QSLAPS----NQSSSAGSCFKCGKPGHWARDCSN 336
           SSC+KCG EGHWARDCS  S  P+     +S+S+G+C+KCGKPGHW+RDCS+
Sbjct: 301 SSCFKCGKEGHWARDCSVPSSNPAAELGGRSASSGTCYKCGKPGHWSRDCSS 341

[Close]

BLAST of CmoCh16G005210 vs. NCBI nr
Match: gi|659102470|ref|XP_008452149.1| (PREDICTED: cold shock protein 1-like [Cucumis melo])

HSP 1 Score: 334.7 bits (857), Expect = 1.8e-88
Identity = 170/289 (58.82%), Postives = 194/289 (67.13%), Query Frame = 1


Query: 55  EVTSKVSPNADAEGIYIAALKGDPIILSQLSGRIANSGNKGFISANTTAHAQSEGGGSCF 114
           E+  K   N      ++ +  G   I  +  G+      KG   A        +G G+CF
Sbjct: 47  EIMIKQEANVVHSRRFVPSSSGSEKIQKRKEGK-----GKGPTIAVEGKRKAKQGHGACF 106

Query: 115 KCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYKC 174
           KCGKLGHWARDCDAPG GGSF+ SGND SVAEK+ PCG GVC+VLTANTERNRGRKFY+C
Sbjct: 107 KCGKLGHWARDCDAPGGGGSFNSSGNDVSVAEKARPCGSGVCLVLTANTERNRGRKFYRC 166

Query: 175 PVRQENGGCGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGENV 234
            VRQENGGCGFFEWCD+A   N +         SSSF DL+CPCGAGSC  LTAK+  NV
Sbjct: 167 LVRQENGGCGFFEWCDSAPGQNPL---------SSSFPDLQCPCGAGSCRILTAKSRNNV 226

Query: 235 GQQFYRCPSYQATCGFFQWCKEASMAAKNQVSGSKVYGNTTDTSKGMPATARAGSSCYKC 294
           G+QFY CPS Q +C FFQWC+E S+  KNQVS  KVY N    S        + SSCYKC
Sbjct: 227 GKQFYCCPSSQDSCRFFQWCEEPSIETKNQVSAPKVYANDMSKSVTGNVKTSSSSSCYKC 286

Query: 295 GGEGHWARDCSQSLAPSN--------QSSSAGSCFKCGKPGHWARDCSN 336
           GGEGHWARDCSQSL+PSN        QSSS GSCFKCG+PGHWA+DCSN
Sbjct: 287 GGEGHWARDCSQSLSPSNPPAAYGRSQSSSLGSCFKCGQPGHWAKDCSN 321

[Close]

BLAST of CmoCh16G005210 vs. NCBI nr
Match: gi|595923889|ref|XP_007214869.1| (hypothetical protein PRUPE_ppa020564mg [Prunus persica])

HSP 1 Score: 318.9 bits (816), Expect = 1.0e-83
Identity = 184/352 (52.27%), Postives = 218/352 (61.93%), Query Frame = 1


Query: 18  DDEDFLSEVAAAEARALASKRRKI-----PNHTIDPPKRAIAEVTSKVSPNADAEGIYIA 77
           +D+DFLS+VAAAEA+ALASKRR+I     PN  +    RA      K   +++  GIY A
Sbjct: 13  EDDDFLSQVAAAEAQALASKRRRISIAPSPNSAVSFHSRA----NHKEGLDSEDGGIYTA 72

Query: 78  ALKG------DPIILSQLSGRI--ANSGNKGFISANTTAHAQSEGGGSCFKCGKLGHWAR 137
           ALKG      +P      +GR+    +GN G           S GGGSCFKCGK GHWAR
Sbjct: 73  ALKGSQRAAPEPPRGGFSTGRVNVGRTGNDGI----------SAGGGSCFKCGKPGHWAR 132

Query: 138 DCDAPGSGGSFSFSGNDTS----VAEKSCPCGMGVCVVLTANTERNRGRKFYKCPVRQEN 197
           DCD  G G   +  G D+S    V EKSCPCG G C+VLTANTE+NRGRKFYKCP+RQEN
Sbjct: 133 DCDVTGGGYYGNSGGGDSSASISVPEKSCPCGFGACMVLTANTEKNRGRKFYKCPLRQEN 192

Query: 198 GGCGFFEWCDNASATNIMT-----YGSQNR-----ASSSSFSDLKCPCGAGSCITLTAKT 257
           GGCGFFEWCDNAS  N+M       GS  R     AS SSF  L+CPCG G C+ LTAKT
Sbjct: 193 GGCGFFEWCDNASGPNVMASTGMGSGSATRTHSYAASDSSFPALECPCGGGLCLILTAKT 252

Query: 258 GENVGQQFYRCPSYQATCGFFQWCKEASMAAKNQVSGS--KVYGNTTDTSKGMPATARAG 317
           G+N+G QFYRCP+ +  CGFF+WC E + AA   + GS  KV       +       R G
Sbjct: 253 GKNIGSQFYRCPANEG-CGFFKWCNEHTGAAAGVLGGSAAKVERKVLSEASNNGFGVRTG 312

Query: 318 SSCYKCGGEGHWARDC---SQSLAP----SNQSSSAGSCFKCGKPGHWARDC 334
           SSC+KCG EGHWARDC       AP    +  ++S GSC+KCGKPGHWARDC
Sbjct: 313 SSCFKCGKEGHWARDCPAVPSYNAPVELEARSAASPGSCYKCGKPGHWARDC 349

The following BLAST results are available for this feature:

BLAST of CmoCh16G005210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CSP3_ARATH	4.5e-10	27.34	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1	[more]
HEXP_LEIMA	1.2e-07	25.00	DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1	[more]
GRP2_NICSY	1.3e-06	44.64	Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1	[more]
CSP1_ARATH	3.9e-06	28.98	Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1	[more]
TOP3A_ORYSJ	5.1e-06	39.29	DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica GN=TOP3A PE=3 SV=1	[more]

BLAST of CmoCh16G005210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVB6_CUCSA	6.3e-112	67.61	DNA topoisomerase OS=Cucumis sativus GN=Csa_4G062410 PE=3 SV=1	[more]
W9SC70_9ROSA	1.5e-89	53.13	DNA topoisomerase OS=Morus notabilis GN=L484_017710 PE=3 SV=1	[more]
M5X3H0_PRUPE	7.2e-84	52.27	DNA topoisomerase OS=Prunus persica GN=PRUPE_ppa020564mg PE=3 SV=1	[more]
M1CMN8_SOLTU	4.5e-78	46.33	DNA topoisomerase OS=Solanum tuberosum GN=PGSC0003DMG400027518 PE=3 SV=1	[more]
A0A0V0HP49_SOLCH	5.9e-78	47.62	DNA topoisomerase OS=Solanum chacoense PE=3 SV=1	[more]

BLAST of CmoCh16G005210 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G42860.1	4.4e-64	42.24	zinc knuckle (CCHC-type) family protein	[more]
AT5G13920.1	1.1e-17	35.17	GRF zinc finger / Zinc knuckle protein	[more]
AT2G17870.1	2.5e-11	27.34	cold shock domain protein 3	[more]
AT3G43590.1	8.9e-09	23.24	zinc knuckle (CCHC-type) family protein	[more]
AT1G54930.1	1.5e-08	39.13	GRF zinc finger / Zinc knuckle protein	[more]

BLAST of CmoCh16G005210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460018\|ref\|XP_004147743.1\|	9.0e-112	67.61	PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]	[more]
gi\|1009173363\|ref\|XP_015867777.1\|	1.2e-92	53.30	PREDICTED: DNA-binding protein HEXBP-like isoform X1 [Ziziphus jujuba]	[more]
gi\|703161752\|ref\|XP_010112874.1\|	2.2e-89	53.13	DNA topoisomerase 3-alpha [Morus notabilis]	[more]
gi\|659102470\|ref\|XP_008452149.1\|	1.8e-88	58.82	PREDICTED: cold shock protein 1-like [Cucumis melo]	[more]
gi\|595923889\|ref\|XP_007214869.1\|	1.0e-83	52.27	hypothetical protein PRUPE_ppa020564mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000380	Topo_IA
IPR001878	Znf_CCHC
IPR010666	Znf_GRF

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003917	DNA topoisomerase type I activity
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006265	DNA topological change

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051276	chromosome organization
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0044699	single-organism process
biological_process	GO:0050896	response to stimulus
biological_process	GO:0010212	response to ionizing radiation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0070647	protein modification by small protein conjugation or removal
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0016571	histone methylation
biological_process	GO:0006265	DNA topological change
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0009314	response to radiation
biological_process	GO:0070646	protein modification by small protein removal
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003917	DNA topoisomerase type I activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G005210.1	CmoCh16G005210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000380	DNA topoisomerase, type IA	PANTHER	PTHR11390	PROKARYOTIC DNA TOPOISOMERASE	coord: 141..334 score: 1.6
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 90..128 score: 1.9E-7coord: 290..335 score: 2.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 112..127 score: 1.5E-7coord: 290..306 score: 6.9E-8coord: 319..334 score: 7.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 112..128 score: 5.7E-5coord: 319..335 score: 6.4E-6coord: 290..306 score: 2.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 320..335 score: 11.004coord: 291..306 score: 10.675coord: 113..126 score: 10
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 106..130 score: 4.19E-8coord: 287..335 score: 8.05
IPR010666	Zinc finger, GRF-type	PFAM	PF06839	zf-GRF	coord: 215..256 score: 5.7E-14coord: 148..191 score: 8.9
None	No IPR available	PANTHER	PTHR11390:SF25	SUBFAMILY NOT NAMED	coord: 141..334 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G005210	Cucsa.179950	Cucumber (Gy14) v1	cgycmoB0511
CmoCh16G005210	CmaCh16G004810	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G005210	Cla005433	Watermelon (97103) v1	cmowmB302
CmoCh16G005210	Csa4G062410	Cucumber (Chinese Long) v2	cmocuB325
CmoCh16G005210	ClCG07G010840	Watermelon (Charleston Gray)	cmowcgB293
CmoCh16G005210	CSPI04G07240	Wild cucumber (PI 183967)	cmocpiB332
CmoCh16G005210	Lsi07G008070	Bottle gourd (USVL1VR-Ls)	cmolsiB314
CmoCh16G005210	Cp4.1LG14g03120	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G005210	CsaV3_4G007470	Cucumber (Chinese Long) v3	cmocucB0388
CmoCh16G005210	Cla97C07G137580	Watermelon (97103) v2	cmowmbB335
CmoCh16G005210	Bhi01G002391	Wax gourd	cmowgoB0433
CmoCh16G005210	CsGy4G007130	Cucumber (Gy14) v2	cgybcmoB467
CmoCh16G005210	Carg11404	Silver-seed gourd	carcmoB0898

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G005210	Cucurbita pepo (Zucchini)	cmocpeB315
CmoCh16G005210	Melon (DHL92) v3.6.1	cmomedB337
CmoCh16G005210	Silver-seed gourd	carcmoB0054
CmoCh16G005210	Cucurbita moschata (Rifu)	cmocmoB288
CmoCh16G005210	Cucurbita maxima (Rimu)	cmacmoB703
CmoCh16G005210	Melon (DHL92) v3.5.1	cmomeB294