CmoCh16G003230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G003230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Tubulin alpha chain
Location	Cmo_Chr16 : 1476243 .. 1479201 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCTACTTCCTTGCTTGAGGATACTAGCAACACTGACTTTGGACTTGGTGGCGAGATGAAGGGAGAAAACAGAGATTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTGACAAAAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGTTAATTTCCTTATGATTTTATTGGAGTATATTGAATATGCTATTCGAATATTTAAATTCATGTTATCTTTTCGTTATCATTTTCTATTGTTCCCATGCTTGACGAGTTATGACCAACATAACCAGAATTTGGTGAGCAGTCGAGGAAAATATTATTACTATCCCACCAAGAATATCGAAAGACTGGCCAGCCATACCAAAACCGAAGTTCAAATAAGGGATCTGTAAGAAAGAATTACAAAAATTAGCTCCAAACGTTGAGAACCATTCAAAACAAATGGACGACCAAAACTTTTCTGAAGCAAAAGCCTAAAGGGAAGCATTACAGCGGGCCAAGCTTTAGAAATCCTCCCATGACCTCTCTGTCCTAGAAGTCTTTGTGCTTTCTACTAAATACTCCAAATAACAACAACATAATCTGCCGGCAGAAAAACCATGTCGTTGTTATGAAATGGTAGATGAAAAATAATCTCCTCCACACATCACTAAGTAGGTAATTGGAAATGAAAAGCATGCGCCAGGTGCCCGAAAATCTTCTTCCAAAATCTTCCCAGCAAACATGCATCTGAAGTAGCTCTTCGGATGAACTTACTTGCAAAGATCACACCATTGAAATCAAACCACCGAGGACAATTTTAAATAAATCCATGATATTGATTCTCCCACAACCGGCAAAGAGAAGAGTAGAATTTAACCTTTTTCAGAAGCGAGTTCTTCCTAGTTTAGCAAAAAAAAAACCCAAACACTTGTATCCTAGTGATTAATAGATAAATACAAAACCCCGGTCGATGTTAAGCTCTGTTAAATTAAGTTTTCTTGAAAGTGAAGTTAATGGGACTAAACTGCCCAAAAGAAGAAAAGAAATCAACTGAGGAAATTTCTTTGAAGAGGGAGATTATAGAGAGGGAAAATAGACTTTAAAAGACCACCTTCAACTGAATGGCCTTCCTAAAAATAATAATGAAGCCACTCTCAAATGAAAGATTAAACAATATTTAGCATGGGTACAACGAAATAGATTTTGAGTGCTTCCTAAATGTAGATTGTATTTTCTGATATCGATCTTGTACTGCAACATATCAGGCTTTGGTTAATAGAGCAATAGTTGTGAAAGCTAGATTTTCAATGCCCAAACCACCCTCTTTTAGAACAACTCAACAAGATAAGGACCTTCCCCACACCCCCGCGAAAAAAGAGATGAAGTCATTGAGTTTAATGATCAGTGGTTCAAGCTTTGAAGATTTCAGTTTAGAGGAATCCCACTCAAAACCAACTAGATCAGAGCAAGTCTGCCACCCTCGGAGAGAACTTCTTCCATAATAACAGGTGGTTCTCCTCTTTCTAATAGCTCTTCTAGCCCCAAATTTTAGCCTCGAGTATACAACCAATTAGGGTAGAGATATTAACTGAATGCATACAACTATTTATGAAGGCTTAACATAGAACACGCTGAACCAACCTCTTCTGTTAGACCGTTGATATAGTGGCAAAATAAGGGAAGAAGAGTCTTCACTTCCTGAAAAAGGCACCCTTCACCAACCTTCGCCAAAATGTGGAAAGCAATCTATCAACCAAGTAACAATTCCTATCCTTTCTCAAACACAAACTTTCTTTCATCCGTGATTCTCAATTAGAAAGACTTGCTTTCTATTGTAAAGCACCATCAAACATGAAGACAAATCAAAGAAGAAAGTACCAGATCCCTTTTCCAGATCCTAATTAGCAATTCGGTCATTCAACAATCTCCCATTTTTTCTGTACTTATAGCAGGTTAACAGCATCATGTGCCTGCTATTCTCTCCATACATCATTTGTCTTAGTAATTCGTATATGAAGCGTACTAGTAATTTTTTTATAAGTCTAACTTCGACATGCCAAAACTCATAATTGGAACCAATGATACTGTTAATCTTAGCTAGCAGCATCAGTTTTGGAGCGGTCAATCAGTAGAGAAACACCAACATATCTGAGCGTAAGGTTTAATATAGAAGTCTGCAGTATTTGAGTTCTACATGCACTGGAATTATATTCTATTTTTCCAAACAAAGTCCTGGGAAAACTGAAGTTTATTTCTAATTTCGTGCTGGAAGGAACAGAATAAACTTTATCATGCATTTATCTTTTCTGCGTGATCCATTAATTGGATCTTAGTATTATGTTGATATGATTGGCATAGGACGATTGCCCTAAGAATGATGGTCGGTTGTGTCTGTTTGGTCTTCGAACTTTAACATTTACAAATTTAGTTCATGAACTTTAATAATTTTTTGTAATCGACAAATCTACTAAATACAAAATTAAACGTTTAGGATTCCTAACCGGATTGATTATAGTCCGTTCCCTTTCATTTCTATCATTTCAACTGCATATGTCAGCTTTAATTCATTTCATTTGGTTTTCAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTTTATACTTTGTAAGGCTCCTTTCTCTTATTACTGCTCCAATTTCTGTTTGATATCCAAGTACTTAAGAGGAGGTCGAAACCGACATCTTTACTCTAATACTATTTTTATGCAGTTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCGTACGTTGATCCATATGCTCTTTTAGAAGACGAAAGAATGTCACAAATGGCTCCTCGGGTAAATTGA

mRNA sequence

GAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCTACTTCCTTGCTTGAGGATACTAGCAACACTGACTTTGGACTTGGTGGCGAGATGAAGGGAGAAAACAGAGATTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTGACAAAAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTTTATACTTTTTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCGTACGTTGATCCATATGCTCTTTTAGAAGACGAAAGAATGTCACAAATGGCTCCTCGGGTAAATTGA

Coding sequence (CDS)

GAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCTACTTCCTTGCTTGAGGATACTAGCAACACTGACTTTGGACTTGGTGGCGAGATGAAGGGAGAAAACAGAGATTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTGACAAAAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTTTATACTTTTTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCGTACGTTGATCCATATGCTCTTTTAGAAGACGAAAGAATGTCACAAATGGCTCCTCGGGTAAATTGA

Homology

[Close]

BLAST of CmoCh16G003230 vs. TrEMBL
Match: A0A0A0KY14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000570 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.7e-67
Identity = 134/150 (89.33%), Postives = 144/150 (96.00%), Query Frame = 1


Query: 1   EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSN 60
           EEPPESLFMKELKKRGITPTSLLEDT+++DF LGGEM GENRDFSRRSAVSTEV+KSLSN
Sbjct: 69  EEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLSN 128

Query: 61  QRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDG 120
           QRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFFLG SF+HDG
Sbjct: 129 QRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG 188

Query: 121 TKTPISPPPYVDPYALLEDERMSQMAPRVN 151
            +TPISPPPYVDPYALLEDER+SQ+AP VN
Sbjct: 189 -QTPISPPPYVDPYALLEDERISQIAPPVN 217

[Close]

BLAST of CmoCh16G003230 vs. TrEMBL
Match: E5GBH6_CUCME (Tubulin alpha chain OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.9e-64
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 9   MKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQL 68
           MKELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQL
Sbjct: 1   MKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQL 60

Query: 69  NSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDGTKTPISPP 128
           NSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFF G SF+HDG KTPISPP
Sbjct: 61  NSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGSSFIHDG-KTPISPP 120

Query: 129 PYVDPYALLEDERMSQMAPRVN 151
           PYVDPYALLEDER+SQ+AP VN
Sbjct: 121 PYVDPYALLEDERISQIAPPVN 141

[Close]

BLAST of CmoCh16G003230 vs. TrEMBL
Match: W9RN54_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003356 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 8.9e-58
Identity = 114/151 (75.50%), Postives = 138/151 (91.39%), Query Frame = 1


Query: 1   EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEM-KGENRDFSRRSAVSTEVDKSLS 60
           EEPPESLFMKEL++RG+TPTSL EDT+ +D+GL  E  + E R FS+R+AVSTEV+KSLS
Sbjct: 71  EEPPESLFMKELRRRGMTPTSLREDTNTSDYGLNDETTRKEGRAFSQRNAVSTEVEKSLS 130

Query: 61  NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHD 120
           +QRERSM+LNSEGLEGLIPRA+LLLTIGGTFFLGFWPLI++TV+FF ALYF+ GP+FVHD
Sbjct: 131 DQRERSMKLNSEGLEGLIPRARLLLTIGGTFFLGFWPLILITVAFFSALYFYFGPAFVHD 190

Query: 121 GTKTPISPPPYVDPYALLEDERMSQMAPRVN 151
            +K PISPPPY+DPYALLE+ER+SQ+APR+N
Sbjct: 191 ASKMPISPPPYIDPYALLEEERISQIAPRIN 221

[Close]

BLAST of CmoCh16G003230 vs. TrEMBL
Match: M5VKJ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011181mg PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 4.1e-55
Identity = 108/150 (72.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 1   EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSN 60
           EEPPESLFMKEL++RG+TPTSLLE+    ++G   EM  E+R FS R+AVSTE++KSL+N
Sbjct: 71  EEPPESLFMKELRRRGMTPTSLLEEKERIEYGANDEMGKEDRGFSTRNAVSTEIEKSLAN 130

Query: 61  QRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDG 120
           QRERSMQLNSEGLEGLIPRA+LLLTIGGTFFLGFWPLI++TV+ F ALY + G +F+HDG
Sbjct: 131 QRERSMQLNSEGLEGLIPRARLLLTIGGTFFLGFWPLILITVALFSALYLYFGSTFIHDG 190

Query: 121 TKTPISPPPYVDPYALLEDERMSQMAPRVN 151
           + +PISPP Y+DPY LLEDER+SQ+APRVN
Sbjct: 191 SSSPISPPQYIDPYELLEDERISQIAPRVN 220

[Close]

BLAST of CmoCh16G003230 vs. TrEMBL
Match: A0A067EE73_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028172mg PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.0e-54
Identity = 112/152 (73.68%), Postives = 131/152 (86.18%), Query Frame = 1


Query: 1   EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRD--FSRRSAVSTEVDKSL 60
           EEPPESLFMKELK+RG+TPTSLLED+S TD GL  + K +  D  FSRR+ VSTE+DKSL
Sbjct: 61  EEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSL 120

Query: 61  SNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVH 120
           ++QRERSM LNSEGLEGL+PRAKLLLT+GGTFFLGFWPLI+VTV FF ALYF+ GP+FVH
Sbjct: 121 ADQRERSMALNSEGLEGLVPRAKLLLTLGGTFFLGFWPLILVTVGFFSALYFYFGPTFVH 180

Query: 121 DGTKTPISPPPYVDPYALLEDERMSQMAPRVN 151
           D + +P+SP  Y DPYALLEDER+SQ+AP VN
Sbjct: 181 DASNSPMSPAQYGDPYALLEDERISQIAPHVN 212

[Close]

BLAST of CmoCh16G003230 vs. TAIR10
Match: AT1G50020.1 (AT1G50020.1 unknown protein)

HSP 1 Score: 190.3 bits (482), Expect = 8.8e-49
Identity = 99/151 (65.56%), Postives = 121/151 (80.13%), Query Frame = 1


Query: 1   EEPPESLFMKELKKRGITPTSLLEDTS-NTDFGLGGEMKGENRDFSRRSAVSTEVDKSLS 60
           EEPPESLFMKELK+RG+TPTSLL+D   + D    G+  G +   S+ +A +   DKSL 
Sbjct: 62  EEPPESLFMKELKRRGMTPTSLLQDYEVDQDEIKTGKETGNS---SKTTATTPAFDKSLL 121

Query: 61  NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHD 120
           NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLGFWPLIV+T+  F ALY + G  F+HD
Sbjct: 122 NQRERSLALNSEGLEGLIPRARILLTIGGTFFLGFWPLIVLTLGAFSALYLYFGADFIHD 181

Query: 121 GTKTPISPPPYVDPYALLEDERMSQMAPRVN 151
           G++TP+SPPPY+DPYALLEDER+S M PR+N
Sbjct: 182 GSRTPVSPPPYIDPYALLEDERISGMDPRLN 209

[Close]

BLAST of CmoCh16G003230 vs. NCBI nr
Match: gi|659108855|ref|XP_008454422.1| (PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 1.2e-68
Identity = 136/150 (90.67%), Postives = 144/150 (96.00%), Query Frame = 1


Query: 1   EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSN 60
           EEPPESLFMKELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRSAVSTEV+KSLSN
Sbjct: 69  EEPPESLFMKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEVNKSLSN 128

Query: 61  QRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDG 120
           QRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFF G SF+HDG
Sbjct: 129 QRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGSSFIHDG 188

Query: 121 TKTPISPPPYVDPYALLEDERMSQMAPRVN 151
            KTPISPPPYVDPYALLEDER+SQ+AP VN
Sbjct: 189 -KTPISPPPYVDPYALLEDERISQIAPPVN 217

[Close]

BLAST of CmoCh16G003230 vs. NCBI nr
Match: gi|449465109|ref|XP_004150271.1| (PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.9e-67
Identity = 134/150 (89.33%), Postives = 144/150 (96.00%), Query Frame = 1


Query: 1   EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSN 60
           EEPPESLFMKELKKRGITPTSLLEDT+++DF LGGEM GENRDFSRRSAVSTEV+KSLSN
Sbjct: 69  EEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLSN 128

Query: 61  QRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDG 120
           QRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFFLG SF+HDG
Sbjct: 129 QRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDG 188

Query: 121 TKTPISPPPYVDPYALLEDERMSQMAPRVN 151
            +TPISPPPYVDPYALLEDER+SQ+AP VN
Sbjct: 189 -QTPISPPPYVDPYALLEDERISQIAPPVN 217

[Close]

BLAST of CmoCh16G003230 vs. NCBI nr
Match: gi|307135958|gb|ADN33818.1| (tubulin alpha chain [Cucumis melo subsp. melo])

HSP 1 Score: 251.9 bits (642), Expect = 7.0e-64
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 9   MKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQL 68
           MKELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQL
Sbjct: 1   MKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQL 60

Query: 69  NSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDGTKTPISPP 128
           NSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFF G SF+HDG KTPISPP
Sbjct: 61  NSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGSSFIHDG-KTPISPP 120

Query: 129 PYVDPYALLEDERMSQMAPRVN 151
           PYVDPYALLEDER+SQ+AP VN
Sbjct: 121 PYVDPYALLEDERISQIAPPVN 141

[Close]

BLAST of CmoCh16G003230 vs. NCBI nr
Match: gi|703096134|ref|XP_010095744.1| (hypothetical protein L484_003356 [Morus notabilis])

HSP 1 Score: 231.1 bits (588), Expect = 1.3e-57
Identity = 114/151 (75.50%), Postives = 138/151 (91.39%), Query Frame = 1


Query: 1   EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEM-KGENRDFSRRSAVSTEVDKSLS 60
           EEPPESLFMKEL++RG+TPTSL EDT+ +D+GL  E  + E R FS+R+AVSTEV+KSLS
Sbjct: 71  EEPPESLFMKELRRRGMTPTSLREDTNTSDYGLNDETTRKEGRAFSQRNAVSTEVEKSLS 130

Query: 61  NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHD 120
           +QRERSM+LNSEGLEGLIPRA+LLLTIGGTFFLGFWPLI++TV+FF ALYF+ GP+FVHD
Sbjct: 131 DQRERSMKLNSEGLEGLIPRARLLLTIGGTFFLGFWPLILITVAFFSALYFYFGPAFVHD 190

Query: 121 GTKTPISPPPYVDPYALLEDERMSQMAPRVN 151
            +K PISPPPY+DPYALLE+ER+SQ+APR+N
Sbjct: 191 ASKMPISPPPYIDPYALLEEERISQIAPRIN 221

[Close]

BLAST of CmoCh16G003230 vs. NCBI nr
Match: gi|1009165623|ref|XP_015901140.1| (PREDICTED: uncharacterized protein LOC107434217 [Ziziphus jujuba])

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-55
Identity = 112/151 (74.17%), Postives = 133/151 (88.08%), Query Frame = 1


Query: 1   EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTE-VDKSLS 60
           EEPPESLFMKEL+KRG+TPTSLLEDT+ TD+G   E   + R FS+++AVSTE V++SL 
Sbjct: 67  EEPPESLFMKELRKRGMTPTSLLEDTNRTDYGPNDETSKQERAFSQKNAVSTEEVERSLL 126

Query: 61  NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHD 120
           NQ+ERSM LNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TV+FF ALY + G SF+HD
Sbjct: 127 NQKERSMMLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLILITVAFFSALYLYFGSSFIHD 186

Query: 121 GTKTPISPPPYVDPYALLEDERMSQMAPRVN 151
            +KTPISPP Y+DPYALLE+ER+SQ+APRVN
Sbjct: 187 ASKTPISPPQYIDPYALLEEERISQIAPRVN 217

The following BLAST results are available for this feature:

BLAST of CmoCh16G003230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G003230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY14_CUCSA	2.7e-67	89.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000570 PE=4 SV=1	[more]
E5GBH6_CUCME	4.9e-64	90.14	Tubulin alpha chain OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RN54_9ROSA	8.9e-58	75.50	Uncharacterized protein OS=Morus notabilis GN=L484_003356 PE=4 SV=1	[more]
M5VKJ8_PRUPE	4.1e-55	72.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011181mg PE=4 SV=1	[more]
A0A067EE73_CITSI	2.0e-54	73.68	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028172mg PE=4 SV=1	[more]

BLAST of CmoCh16G003230 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50020.1	8.8e-49	65.56	unknown protein	[more]

BLAST of CmoCh16G003230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108855\|ref\|XP_008454422.1\|	1.2e-68	90.67	PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo]	[more]
gi\|449465109\|ref\|XP_004150271.1\|	3.9e-67	89.33	PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus]	[more]
gi\|307135958\|gb\|ADN33818.1\|	7.0e-64	90.14	tubulin alpha chain [Cucumis melo subsp. melo]	[more]
gi\|703096134\|ref\|XP_010095744.1\|	1.3e-57	75.50	hypothetical protein L484_003356 [Morus notabilis]	[more]
gi\|1009165623\|ref\|XP_015901140.1\|	2.7e-55	74.17	PREDICTED: uncharacterized protein LOC107434217 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G003230.1	CmoCh16G003230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35699	FAMILY NOT NAMED	coord: 1..150 score: 1.1
None	No IPR available	PANTHER	PTHR35699:SF1	F2J10.10 PROTEIN	coord: 1..150 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G003230	Cucsa.298520	Cucumber (Gy14) v1	cgycmoB0818
CmoCh16G003230	CmaCh04G004300	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G003230	Cla006457	Watermelon (97103) v1	cmowmB287
CmoCh16G003230	Csa4G000570	Cucumber (Chinese Long) v2	cmocuB322
CmoCh16G003230	ClCG10G010010	Watermelon (Charleston Gray)	cmowcgB273
CmoCh16G003230	CSPI04G00080	Wild cucumber (PI 183967)	cmocpiB329
CmoCh16G003230	CsaV3_4G000050	Cucumber (Chinese Long) v3	cmocucB0385
CmoCh16G003230	CsGy4G000090	Cucumber (Gy14) v2	cgybcmoB465

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G003230	Cucumber (Chinese Long) v2	cmocuB338
CmoCh16G003230	Melon (DHL92) v3.5.1	cmomeB298
CmoCh16G003230	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G003230	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G003230	Cucurbita pepo (Zucchini)	cmocpeB321
CmoCh16G003230	Bottle gourd (USVL1VR-Ls)	cmolsiB294
CmoCh16G003230	Melon (DHL92) v3.6.1	cmomedB317
CmoCh16G003230	Melon (DHL92) v3.6.1	cmomedB342
CmoCh16G003230	Silver-seed gourd	carcmoB0402
CmoCh16G003230	Silver-seed gourd	carcmoB0509
CmoCh16G003230	Cucumber (Chinese Long) v3	cmocucB0409
CmoCh16G003230	Watermelon (97103) v2	cmowmbB316
CmoCh16G003230	Wax gourd	cmowgoB0405
CmoCh16G003230	Cucurbita moschata (Rifu)	cmocmoB096
CmoCh16G003230	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh16G003230	Cucumber (Gy14) v1	cgycmoB0625
CmoCh16G003230	Cucurbita maxima (Rimu)	cmacmoB133
CmoCh16G003230	Cucurbita maxima (Rimu)	cmacmoB322