CmoCh16G002610 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1158333 .. 1158671 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTAGGAGTTTTGTGGTGATGATTTTGGTGGCATTGTTGATCGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGGAAATCACCGTCCAAGGCTCCGTCGGCGTCTCCGTCAGTGAAGTCGCCAAAATCCTCTCCGGCCGCGCCTACTCCGGCTTCTTCGCCATCTACTTCTCCGTCTCCGGCGGCTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCCGCTCCGTCAGGTAGCGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTTCTATACGCCGTCGTTTTGATGATCTGA

mRNA sequence

ATGGCGATTAGGAGTTTTGTGGTGATGATTTTGGTGGCATTGTTGATCGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGGAAATCACCGTCCAAGGCTCCGTCGGCGTCTCCGTCAGTGAAGTCGCCAAAATCCTCTCCGGCCGCGCCTACTCCGGCTTCTTCGCCATCTACTTCTCCGTCTCCGGCGGCTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCCGCTCCGTCAGGTAGCGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTTCTATACGCCGTCGTTTTGATGATCTGA

Coding sequence (CDS)

ATGGCGATTAGGAGTTTTGTGGTGATGATTTTGGTGGCATTGTTGATCGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGGAAATCACCGTCCAAGGCTCCGTCGGCGTCTCCGTCAGTGAAGTCGCCAAAATCCTCTCCGGCCGCGCCTACTCCGGCTTCTTCGCCATCTACTTCTCCGTCTCCGGCGGCTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCCGCTCCGTCAGGTAGCGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTTCTATACGCCGTCGTTTTGATGATCTGA
Homology
[Close]
BLAST of CmoCh16G002610 vs. Swiss-Prot
Match: AGP1_ARATH (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana GN=AGP1 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-07
Identity = 61/127 (48.03%), Postives = 76/127 (59.84%), Query Frame = 1 

Query: 4   RSFVVMILVALLIGSAIAQSPAASPS------LSPRKSPSK--APSASPSVKSPKSSPAA 63
           +S V ++L ALLI SA+AQSPA +PS      +SP  SP K  AP+ +P V    S  AA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAA 64

Query: 64  PTPASSPS----------TSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVL 113
            TP SS S          T+ SPA SPS+IS  P +AP P+  GA S  F+ FGSVAV+L
Sbjct: 65  LTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVML 124

[Close]
BLAST of CmoCh16G002610 vs. TrEMBL
Match: A0A0A0KZB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111620 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-22
Identity = 89/123 (72.36%), Postives = 97/123 (78.86%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPA-APTPA 60
           MAI S V +I V+  I SA AQSPAASPSLSP KSPSKAPS +    SPKSSPA APTP+
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHN----SPKSSPAVAPTPS 60

Query: 61  S----------SPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVV 113
           S          SPSTSPSPA+SP+SISSPPADAPAPSG+GAASI+FSVFGSVAV LYAVV
Sbjct: 61  SLKSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 119

[Close]
BLAST of CmoCh16G002610 vs. TrEMBL
Match: I3S0H2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-09
Identity = 65/130 (50.00%), Postives = 88/130 (67.69%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP---------SKAPSASPSVKSPKS 60
           MA  + V M+L ALL+GSA+AQSPA+SP+LSP K+P         S +P+ SPS ++P +
Sbjct: 1   MASSTAVFMLLAALLVGSAVAQSPASSPALSPTKTPVAASPRKSLSPSPAVSPSAQTPAA 60

Query: 61  SP-------AAPTPA---SSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSV 112
           SP        +P+PA   S P++S +PA +PSSISSPP++A +PS +GAA   FSV GS 
Sbjct: 61  SPPTPVESGPSPSPATVNSPPASSDAPAVTPSSISSPPSEAQSPSQNGAALNRFSVAGSA 120

[Close]
BLAST of CmoCh16G002610 vs. TrEMBL
Match: I1KR06_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G070300 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-07
Identity = 60/136 (44.12%), Postives = 85/136 (62.50%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP------SKAPSASPSVKSPKSSPA 60
           MA  + V+ ++ ALL+ S +AQSPA+SP+LSP+++P      S +P+ SPS  SP SSP 
Sbjct: 1   MACTTVVLTLVAALLVTSVVAQSPASSPALSPKRTPVATPQKSPSPAISPSAVSPSSSPP 60

Query: 61  AP----------------TPASSPSTSPS--PAASPSSISSPPADAPAPSGSGAASISFS 113
           AP                +P  SPS SP+  P+ +PS+IS+PP  APAPS +GAA   F+
Sbjct: 61  APVVNTPSPSPNSVDSPPSPPQSPSVSPAGVPSVTPSAISAPPTGAPAPSQNGAALNRFT 120

[Close]
BLAST of CmoCh16G002610 vs. TrEMBL
Match: V4KJQ5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005132mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-07
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 

Query: 4   RSFVVMILVALLIGSAIAQSPAASPS------LSPRKSPSK---APSASPSVKS---PKS 63
           +S   ++L ALLI SA+AQSPA +PS      LSP  SP K   AP+ SPS ++   P+S
Sbjct: 5   KSLGFLLLAALLISSAVAQSPAPAPSSGGGRRLSPAPSPKKMTPAPAISPSPETALTPES 64

Query: 64  SPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVVLM 113
           S + P+P  + S S SPA +PSSIS+ P++AP P+ SGA S S+SVFGSVAVVL A V  
Sbjct: 65  SSSPPSPPLADSPSDSPAVTPSSISNSPSEAPGPALSGAVSNSYSVFGSVAVVLTAAVFA 124

[Close]
BLAST of CmoCh16G002610 vs. TrEMBL
Match: I1LX63_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G042500 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP-------SKAPSASPSVKSPKSSP 60
           MA  + +  ++ AL + S +AQSPA+SP+LSP+++P       S +P+ SPS  SP SSP
Sbjct: 2   MASSTVLFTLVAALFVTSVVAQSPASSPALSPKRTPVLATPQKSPSPAISPSAVSPSSSP 61

Query: 61  AAPT----------------PASSPSTSPS--PAASPSSISSPPADAPAPSGSGAASISF 113
            APT                P  SPS SP+  P+ +PS+ISSPP++APAPS +GAA   F
Sbjct: 62  PAPTVNAPSPSPTSVDSPPSPPLSPSDSPAGVPSVTPSAISSPPSEAPAPSQNGAALNRF 121

[Close]
BLAST of CmoCh16G002610 vs. TAIR10
Match: AT5G64310.1 (AT5G64310.1 arabinogalactan protein 1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-08
Identity = 61/127 (48.03%), Postives = 76/127 (59.84%), Query Frame = 1 

Query: 4   RSFVVMILVALLIGSAIAQSPAASPS------LSPRKSPSK--APSASPSVKSPKSSPAA 63
           +S V ++L ALLI SA+AQSPA +PS      +SP  SP K  AP+ +P V    S  AA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAA 64

Query: 64  PTPASSPS----------TSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVL 113
            TP SS S          T+ SPA SPS+IS  P +AP P+  GA S  F+ FGSVAV+L
Sbjct: 65  LTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVML 124

[Close]
BLAST of CmoCh16G002610 vs. NCBI nr
Match: gi|449438995|ref|XP_004137273.1| (PREDICTED: classical arabinogalactan protein 1-like [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 89/123 (72.36%), Postives = 97/123 (78.86%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPA-APTPA 60
           MAI S V +I V+  I SA AQSPAASPSLSP KSPSKAPS +    SPKSSPA APTP+
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHN----SPKSSPAVAPTPS 60

Query: 61  S----------SPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVV 113
           S          SPSTSPSPA+SP+SISSPPADAPAPSG+GAASI+FSVFGSVAV LYAVV
Sbjct: 61  SLKSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 119

[Close]
BLAST of CmoCh16G002610 vs. NCBI nr
Match: gi|388491396|gb|AFK33764.1| (unknown [Lotus japonicus])

HSP 1 Score: 68.9 bits (167), Expect = 6.2e-09
Identity = 65/130 (50.00%), Postives = 88/130 (67.69%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP---------SKAPSASPSVKSPKS 60
           MA  + V M+L ALL+GSA+AQSPA+SP+LSP K+P         S +P+ SPS ++P +
Sbjct: 1   MASSTAVFMLLAALLVGSAVAQSPASSPALSPTKTPVAASPRKSLSPSPAVSPSAQTPAA 60

Query: 61  SP-------AAPTPA---SSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSV 112
           SP        +P+PA   S P++S +PA +PSSISSPP++A +PS +GAA   FSV GS 
Sbjct: 61  SPPTPVESGPSPSPATVNSPPASSDAPAVTPSSISSPPSEAQSPSQNGAALNRFSVAGSA 120

[Close]
BLAST of CmoCh16G002610 vs. NCBI nr
Match: gi|356524818|ref|XP_003531025.1| (PREDICTED: classical arabinogalactan protein 1-like [Glycine max])

HSP 1 Score: 62.0 bits (149), Expect = 7.6e-07
Identity = 60/136 (44.12%), Postives = 85/136 (62.50%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP------SKAPSASPSVKSPKSSPA 60
           MA  + V+ ++ ALL+ S +AQSPA+SP+LSP+++P      S +P+ SPS  SP SSP 
Sbjct: 1   MACTTVVLTLVAALLVTSVVAQSPASSPALSPKRTPVATPQKSPSPAISPSAVSPSSSPP 60

Query: 61  AP----------------TPASSPSTSPS--PAASPSSISSPPADAPAPSGSGAASISFS 113
           AP                +P  SPS SP+  P+ +PS+IS+PP  APAPS +GAA   F+
Sbjct: 61  APVVNTPSPSPNSVDSPPSPPQSPSVSPAGVPSVTPSAISAPPTGAPAPSQNGAALNRFT 120

[Close]
BLAST of CmoCh16G002610 vs. NCBI nr
Match: gi|567137237|ref|XP_006394168.1| (hypothetical protein EUTSA_v10005132mg [Eutrema salsugineum])

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 

Query: 4   RSFVVMILVALLIGSAIAQSPAASPS------LSPRKSPSK---APSASPSVKS---PKS 63
           +S   ++L ALLI SA+AQSPA +PS      LSP  SP K   AP+ SPS ++   P+S
Sbjct: 5   KSLGFLLLAALLISSAVAQSPAPAPSSGGGRRLSPAPSPKKMTPAPAISPSPETALTPES 64

Query: 64  SPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVVLM 113
           S + P+P  + S S SPA +PSSIS+ P++AP P+ SGA S S+SVFGSVAVVL A V  
Sbjct: 65  SSSPPSPPLADSPSDSPAVTPSSISNSPSEAPGPALSGAVSNSYSVFGSVAVVLTAAVFA 124

[Close]
BLAST of CmoCh16G002610 vs. NCBI nr
Match: gi|571496957|ref|XP_006593749.1| (PREDICTED: classical arabinogalactan protein 1-like [Glycine max])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP-------SKAPSASPSVKSPKSSP 60
           MA  + +  ++ AL + S +AQSPA+SP+LSP+++P       S +P+ SPS  SP SSP
Sbjct: 2   MASSTVLFTLVAALFVTSVVAQSPASSPALSPKRTPVLATPQKSPSPAISPSAVSPSSSP 61

Query: 61  AAPT----------------PASSPSTSPS--PAASPSSISSPPADAPAPSGSGAASISF 113
            APT                P  SPS SP+  P+ +PS+ISSPP++APAPS +GAA   F
Sbjct: 62  PAPTVNAPSPSPTSVDSPPSPPLSPSDSPAGVPSVTPSAISSPPSEAPAPSQNGAALNRF 121

The following BLAST results are available for this feature:
BLAST of CmoCh16G002610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP1_ARATH5.8e-0748.03Classical arabinogalactan protein 1 OS=Arabidopsis thaliana GN=AGP1 PE=2 SV=2[more]
BLAST of CmoCh16G002610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZB8_CUCSA1.5e-2272.36Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111620 PE=4 SV=1[more]
I3S0H2_LOTJA4.4e-0950.00Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
I1KR06_SOYBN5.3e-0744.12Uncharacterized protein OS=Glycine max GN=GLYMA_08G070300 PE=4 SV=1[more]
V4KJQ5_EUTSA6.9e-0751.24Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005132mg PE=4 SV=1[more]
I1LX63_SOYBN1.2e-0643.80Uncharacterized protein OS=Glycine max GN=GLYMA_13G042500 PE=4 SV=1[more]
BLAST of CmoCh16G002610 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G64310.13.3e-0848.03 arabinogalactan protein 1[more]
BLAST of CmoCh16G002610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438995|ref|XP_004137273.1|2.2e-2272.36PREDICTED: classical arabinogalactan protein 1-like [Cucumis sativus][more]
gi|388491396|gb|AFK33764.1|6.2e-0950.00unknown [Lotus japonicus][more]
gi|356524818|ref|XP_003531025.1|7.6e-0744.12PREDICTED: classical arabinogalactan protein 1-like [Glycine max][more]
gi|567137237|ref|XP_006394168.1|1.0e-0651.24hypothetical protein EUTSA_v10005132mg [Eutrema salsugineum][more]
gi|571496957|ref|XP_006593749.1|1.7e-0643.80PREDICTED: classical arabinogalactan protein 1-like [Glycine max][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002610.1CmoCh16G002610.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G002610CsaV3_4G009610Cucumber (Chinese Long) v3cmocucB0389
CmoCh16G002610Carg08076Silver-seed gourdcarcmoB0511
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002610Cucumber (Chinese Long) v3cmocucB0384
CmoCh16G002610Watermelon (97103) v2cmowmbB316
CmoCh16G002610Watermelon (97103) v2cmowmbB323
CmoCh16G002610Watermelon (97103) v2cmowmbB337
CmoCh16G002610Wax gourdcmowgoB0405
CmoCh16G002610Wax gourdcmowgoB0420
CmoCh16G002610Wax gourdcmowgoB0438
CmoCh16G002610Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G002610Cucumber (Gy14) v1cgycmoB0189
CmoCh16G002610Cucumber (Gy14) v1cgycmoB1100
CmoCh16G002610Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002610Cucurbita maxima (Rimu)cmacmoB325
CmoCh16G002610Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002610Wild cucumber (PI 183967)cmocpiB328
CmoCh16G002610Wild cucumber (PI 183967)cmocpiB333
CmoCh16G002610Cucumber (Chinese Long) v2cmocuB321
CmoCh16G002610Cucumber (Chinese Long) v2cmocuB326
CmoCh16G002610Melon (DHL92) v3.5.1cmomeB296
CmoCh16G002610Melon (DHL92) v3.5.1cmomeB299
CmoCh16G002610Watermelon (Charleston Gray)cmowcgB279
CmoCh16G002610Watermelon (Charleston Gray)cmowcgB295
CmoCh16G002610Watermelon (97103) v1cmowmB298
CmoCh16G002610Watermelon (97103) v1cmowmB307
CmoCh16G002610Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002610Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G002610Bottle gourd (USVL1VR-Ls)cmolsiB294
CmoCh16G002610Bottle gourd (USVL1VR-Ls)cmolsiB295
CmoCh16G002610Bottle gourd (USVL1VR-Ls)cmolsiB312
CmoCh16G002610Cucumber (Gy14) v2cgybcmoB464
CmoCh16G002610Cucumber (Gy14) v2cgybcmoB468
CmoCh16G002610Melon (DHL92) v3.6.1cmomedB339
CmoCh16G002610Melon (DHL92) v3.6.1cmomedB343
CmoCh16G002610Silver-seed gourdcarcmoB0509
CmoCh16G002610Silver-seed gourdcarcmoB0510
CmoCh16G002610Silver-seed gourdcarcmoB1175