CmoCh16G001220 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G001220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Sec-independent protein translocase protein TatA
Location	Cmo_Chr16 : 544251 .. 547007 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATTCCCATAACCATGACCTCCAAATTTCCAGTTCCCACATTCCCATTTTCCCCATCTTCTTCATCTTCATCTTCATCTTCCTCGCCCATCTTATACCCCAAAACCGCCAAAATTCGTCTCTCCTTGTGTAATCTCCCTCTGCGTCTCCGGCTTTTCTCTCCATGGAGTGGTTTAAAGCATTTGGGTATTTCAAGCAGAGGAAGGTTTCCCGGTATGGATATACTTTTTGATGATTGATTCAAGTAATAGTTCATATTTGTTTGAATTAAACGTTTATTGATCTTTGTTCTTGTTATGCTGTCTAAAATGGTGTTGTTGTAGAGAGGAGGAAGAGAATTCCTAAGGGGAAGGCTGTTTTTGCATCTTTGTTTGGGGTTGGAGCTCCGGAGGCATTGGTTATTGGGGTTGTGGCTCTGTTGGTTTTTGGTCCCAAGGGCCTTGCTGAGGTGAGTGGTATAAATCATGTAGATGACTGAAATTTTGGAAATATTTGGCTGCCTCAGATGTGTTCTTTTGTTTGCACATTTTAACTGGTTGTGGAACCTGAATATTGAAGTATTAGATTTCATTCTCGTTTAAGGTATCTGTTAGGCTTTGGAGTTGTGCTGTTGATCAAAGTTGGGAATAGCAACATGAAACTTCACTTACCTTAATACTCTACTCTTTATTGTCTTGAGCCACTGTGGAGAATCTGTAGGTTATATTGTTTGTTGATGTCAAGAAGGGTAGCTTCTAATGTTACTGCTCTGCCTTTGATTTGATTCTCTACTAGGGTGAGATTTTCACACCTTATAAGAAATGTTTCGTTCTCCTCTCCAACTAATGTGGGATCTCATGATCCACCCTCCTTGAGGGATAGCGTCTTTGCTGGCACACCGCTCGATGTCTGGCTCTAATCCATTTGTAACAGCCTAAGCCCACCGTTAGCTGATATTGTCTGCTCATTACGTATCGTTGTTAAGCTTACGGTTTTAAAATGCGTCTACTAGGGATAGGTTTCCACAACTTATAAGGAATGTTTCATTCCCCTTCCCAACCTATGTGGGATCTCACAATCCACCCTCCTTAGGCCAGCTTCCTCACTGGCACACCGCTTGGTGTCTAGCTCTAATACCATTTCTAACAGCCTACGCCCACCGCTAATAGATATTGTTCGCTTTGGCCCGTTATGTATTCCCGTCAACCTCACGGTTTTAAAATGCTCTACTAGGGAGAGGTTTCCACAACTTATAAGGAATGTTTCGTTCCCTTTTCCAACCAACGTGGGATCTCACAATCCACCCTCCTTAGGGTCTAGCTTTCTCGCTGGCACACCGCTTGGTGTCTAGCTCTAATACCATTTGTAACAGCCTAAGCCTACCGCTAATAGATATTGTCCGCTTTGGCCCGTTACGTATCGCAGTCAGCTTCATGGTTTTAAAACGCATCTAATAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCCCCTCTCCAACGAACGTGGGATCTCACATGAACTATCCTAACCCCACCCATCAAACAAAAGGGAATTTGTTTTTGATTGAGAGCATCTAGGATATAATAAGACCCTTTGCATCGTATAAAAAAAACTCGAAATGACATTGATTACCAAGTCTTTACTAAGACCTGAAAACCATTTGGACAGGTTTGCTGTAAAGGATATCAGTAAGTACTTTCGTTGGACTGGAATTTAGTTTACTTATATATATGCCAGGTTGCTCGAACTTTGGGGAAGACCTTACGTACATTTCAACCCACTATAAGAGAACTTCAGGTAATCTCATATTTCGGTTTTTGAGATTTTCCAGCATCACTTCTTAAAGACCTTATTGTGGTTCTTTGCTCTTCATGTATGTCCGTAGGACGTTTCTCGGGAATTCAAGACCACACTTGAGCGAGAAATTGGTCTCGATGAAATCTCGAGTCCAGTCGACAGCTCATACAATTCAAGCAAATCAAATACCTACTCAAACCCACCTTTTGTTCCTAAACCAGAAGAGCCTGTTGCAGTGGCTGAACCAAGTGAGTGGTTAACTTATTTGTCATCTATATTTTTATTTATTATCAGCACTGGTAGTATTCTAGGGAAAGATTTCAAAGCTACATAGAAAAAGTAGAATGCCAAAGGGGAAAAGAATATTGGTAATCAGCCTTGGTTCGTCGTCGGGCATCGTGTCTACGAATGATACGATTGGGTTCAATCATTAGGGATATAGAATCATCATTCTGTCAGCCTCGACTATTATACGATAATGAAAGATCGTTTTCTTATGTATATAAACAGCTGATAATTCTTCATCAGCAAGCAAAGCATACACCACTGAAGAGTACCTTAAGATTGCTAAAACCAAATCACTTTGGTCCTATTTGGTAGCTTTTTGGATGAACCTAGTGTTTATAAGCTTTGTTTTAAAAATGCGCTATCACTCTAACATGTATGAACTTGTAATAGGAGGCGTCGAAGCACCTGTCGCGGTGGCCTCCCGAACTCCAAAATCTTGAAGCAGGTAAGGTTGAGGAGTCTACTGCCTCCTCAAGTCCTGGAGCTGAAAAATAAAGTTATTAGAATCGATTTTGAATGGAGGAGTATTTCTTTCAGGTGGTCGATAGGACAGAGATGATTCTATTAGTGTCTTGGAACTTACTCCGTTTCTAGACATTTTGTAAGATGATTTCGTTGGATTAGTAATCAAAATTCCTTCATGACTTCATATAAAATCTTCTACTGAATTTAATTACCCGCTCA

mRNA sequence

ATAATTCCCATAACCATGACCTCCAAATTTCCAGTTCCCACATTCCCATTTTCCCCATCTTCTTCATCTTCATCTTCATCTTCCTCGCCCATCTTATACCCCAAAACCGCCAAAATTCGTCTCTCCTTGTGTAATCTCCCTCTGCGTCTCCGGCTTTTCTCTCCATGGAGTGGTTTAAAGCATTTGGGTATTTCAAGCAGAGGAAGGTTTCCCGAGAGGAGGAAGAGAATTCCTAAGGGGAAGGCTGTTTTTGCATCTTTGTTTGGGGTTGGAGCTCCGGAGGCATTGGTTATTGGGGTTGTGGCTCTGTTGGTTTTTGGTCCCAAGGGCCTTGCTGAGGTTGCTCGAACTTTGGGGAAGACCTTACGTACATTTCAACCCACTATAAGAGAACTTCAGGACGTTTCTCGGGAATTCAAGACCACACTTGAGCGAGAAATTGGTCTCGATGAAATCTCGAGTCCAGTCGACAGCTCATACAATTCAAGCAAATCAAATACCTACTCAAACCCACCTTTTGTTCCTAAACCAGAAGAGCCTGTTGCAGTGGCTGAACCAAGAGGCGTCGAAGCACCTGTCGCGGTGGCCTCCCGAACTCCAAAATCTTGAAGCAGGTAAGGTTGAGGAGTCTACTGCCTCCTCAAGTCCTGGAGCTGAAAAATAAAGTTATTAGAATCGATTTTGAATGGAGGAGTATTTCTTTCAGGTGGTCGATAGGACAGAGATGATTCTATTAGTGTCTTGGAACTTACTCCGTTTCTAGACATTTTGTAAGATGATTTCGTTGGATTAGTAATCAAAATTCCTTCATGACTTCATATAAAATCTTCTACTGAATTTAATTACCCGCTCA

Coding sequence (CDS)

ATGACCTCCAAATTTCCAGTTCCCACATTCCCATTTTCCCCATCTTCTTCATCTTCATCTTCATCTTCCTCGCCCATCTTATACCCCAAAACCGCCAAAATTCGTCTCTCCTTGTGTAATCTCCCTCTGCGTCTCCGGCTTTTCTCTCCATGGAGTGGTTTAAAGCATTTGGGTATTTCAAGCAGAGGAAGGTTTCCCGAGAGGAGGAAGAGAATTCCTAAGGGGAAGGCTGTTTTTGCATCTTTGTTTGGGGTTGGAGCTCCGGAGGCATTGGTTATTGGGGTTGTGGCTCTGTTGGTTTTTGGTCCCAAGGGCCTTGCTGAGGTTGCTCGAACTTTGGGGAAGACCTTACGTACATTTCAACCCACTATAAGAGAACTTCAGGACGTTTCTCGGGAATTCAAGACCACACTTGAGCGAGAAATTGGTCTCGATGAAATCTCGAGTCCAGTCGACAGCTCATACAATTCAAGCAAATCAAATACCTACTCAAACCCACCTTTTGTTCCTAAACCAGAAGAGCCTGTTGCAGTGGCTGAACCAAGAGGCGTCGAAGCACCTGTCGCGGTGGCCTCCCGAACTCCAAAATCTTGA

Homology

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BLAST of CmoCh16G001220 vs. Swiss-Prot
Match: TATB_PEA (Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum GN=TATB PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.6e-39
Identity = 100/189 (52.91%), Postives = 125/189 (66.14%), Query Frame = 1


Query: 13  SPSSSSSSSSSSPILYPK--TAKIRLSLCN------------LPLRLRLFSPWSGLKHLG 72
           +PS + +SS+S+ +L PK  T  + LS C               L  RLF+PW+G K LG
Sbjct: 2   TPSLAIASSTSTMLLCPKLGTCSMSLSTCTPTSHSKIHHFHLYSLGKRLFTPWNGFKQLG 61

Query: 73  ISSRGRFPE----RRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLG 132
            S++ + P      +K   KGK V+ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LG
Sbjct: 62  FSTKPKKPLFHFIGKKGRCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLG 121

Query: 133 KTLRTFQPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPEE 184
           KTLR FQPTIRE+QDVSREFK+TLEREIG+D+I++P+ S+Y+S+  NT   P        
Sbjct: 122 KTLREFQPTIREIQDVSREFKSTLEREIGIDDITNPLQSTYSSNVRNTTPTPSATEITNN 181

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BLAST of CmoCh16G001220 vs. Swiss-Prot
Match: TATB_ARATH (Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis thaliana GN=TATB PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 6.6e-38
Identity = 107/193 (55.44%), Postives = 127/193 (65.80%), Query Frame = 1


Query: 13  SPSSSSSSSSSSPILYP------KTAKIRLSLCNLPLRLRLFSPWSGLKHLGIS--SRGR 72
           S SSS + + S    YP      K +K  LS     L    FSP+ GLKHLGIS   +  
Sbjct: 10  SSSSSPTITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSRFSPYIGLKHLGISISPKSS 69

Query: 73  FPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTI 132
            PE+++R  K   + ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLRTFQPTI
Sbjct: 70  NPEKKRRC-KSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTI 129

Query: 133 RELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYS-----NPPFVPKPEEPVAVA 192
           RELQDVSR+FK+TLEREIGLD+IS+P  + YN +++N         PP VP  E PV   
Sbjct: 130 RELQDVSRDFKSTLEREIGLDDISTP--NVYNQNRTNPVQPPPPPPPPSVPSTEAPVTAN 189

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BLAST of CmoCh16G001220 vs. Swiss-Prot
Match: TATB_ORYSJ (Sec-independent protein translocase protein TATB, chloroplastic OS=Oryza sativa subsp. japonica GN=TATB PE=2 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 4.3e-29
Identity = 87/160 (54.37%), Postives = 100/160 (62.50%), Query Frame = 1


Query: 14  PSSSSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLKHLGISSRG-RFPERR--- 73
           P    +  + SP  +P + + R        RL L  P+  L    +S R  RF  RR   
Sbjct: 10  PPPCVAMCTPSPSPFPSSQRRRRR------RLTLAQPYCTLGLSFVSGRHHRFLLRRRRR 69

Query: 74  ---KRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRE 133
              KR  +G  V+ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLR FQPTIRE
Sbjct: 70  TESKRTSRGTGVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 129

Query: 134 LQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNP 167
           LQDVSREF++TLEREIGLDE+  P   +Y     N    P
Sbjct: 130 LQDVSREFRSTLEREIGLDEV--PPSMNYRPPTMNNSQQP 161

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BLAST of CmoCh16G001220 vs. Swiss-Prot
Match: TATB_MAIZE (Sec-independent protein translocase protein TATB, chloroplastic OS=Zea mays GN=TATB PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-28
Identity = 76/127 (59.84%), Postives = 88/127 (69.29%), Query Frame = 1


Query: 51  WSGLKHLGISSR--GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAE 110
           W G++   I +R    F     R  +   + ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct: 37  WKGVEWGSIQTRMVSSFVAVGSRTRRRNVICASLFGVGAPEALVIGVVALLVFGPKGLAE 96

Query: 111 VARTLGKTLRTFQPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPF 170
           VAR LGKTLR FQPTIRELQDVSREF++TLEREIG+DE+S    ++Y  +  N    P  
Sbjct: 97  VARNLGKTLRAFQPTIRELQDVSREFRSTLEREIGIDEVSQ--STNYRPTTMNNNQQPAA 156

Query: 171 VP--KPE 174
            P  KPE
Sbjct: 157 DPNVKPE 161

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BLAST of CmoCh16G001220 vs. Swiss-Prot
Match: TATA_THEEB (Sec-independent protein translocase protein TatA OS=Thermosynechococcus elongatus (strain BP-1) GN=tatA PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.4e-09
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 81  SLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSREFKTTLER 140
           ++FG+G PE +VI VVALL+FGPK L E+ R+LGKT R F+   RE QD  +     LE 
Sbjct: 2   NVFGIGLPELIVILVVALLIFGPKKLPEIGRSLGKTKRAFEEASREFQDEIKRQTAALEE 61

Query: 141 E 142
           E
Sbjct: 62  E 62

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BLAST of CmoCh16G001220 vs. TrEMBL
Match: A0A0A0L6M5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183320 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 8.0e-67
Identity = 153/199 (76.88%), Postives = 162/199 (81.41%), Query Frame = 1


Query: 1   MTSKFPVPTFPFSPSS--------SSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWS 60
           MTSK  V T PF PSS        S S+S+SS ILYP T K  LSLCN PL LRLFSPW+
Sbjct: 1   MTSKISVSTLPFPPSSPTSTCSRLSPSTSTSSSILYPITPKFHLSLCNFPLGLRLFSPWT 60

Query: 61  GLKHLGISSRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART 120
           GLKHLGIS+RGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART
Sbjct: 61  GLKHLGISTRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART 120

Query: 121 LGKTLRTFQPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKP 180
           LGKTLR FQPTIRELQDVSREFKTTLEREIGLDEI S V+SSYN+SKS TYSNPP V K 
Sbjct: 121 LGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEIESSVNSSYNASKS-TYSNPPSVSKA 180

Query: 181 EEPVAVAE--PRGVEAPVA 190
           EE V+ +   P+  E  VA
Sbjct: 181 EEFVSNSPFLPKAEELSVA 198

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BLAST of CmoCh16G001220 vs. TrEMBL
Match: I3S6U9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.9e-42
Identity = 106/172 (61.63%), Postives = 123/172 (71.51%), Query Frame = 1


Query: 18  SSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLKHLGISSRGR--FPERRKRIPKG 77
           S S S++P  + K  +  LS    P+   LFSPW+GLKHLGIS++ +  F   RK   KG
Sbjct: 23  SLSPSATP--HTKIQRFHLSSWLSPMGRSLFSPWNGLKHLGISTKPKPLFHIDRKGRCKG 82

Query: 78  KAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSREFK 137
           K V+ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLRTFQPTIRELQDVSREFK
Sbjct: 83  KLVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSREFK 142

Query: 138 TTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPEEPVAVAEPRGVEAP 188
           +TLEREIGLD+ISSP  + YNS+  NT S P      +      +P G + P
Sbjct: 143 STLEREIGLDDISSPTQNPYNSNFQNTTSTPSSTDSTKSSPIAVDPDGTQDP 192

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BLAST of CmoCh16G001220 vs. TrEMBL
Match: A0A151U6C3_CAJCA (Sec-independent protein translocase protein tatA/E isogeny OS=Cajanus cajan GN=KK1_007463 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 103/147 (70.07%), Postives = 113/147 (76.87%), Query Frame = 1


Query: 20  SSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLKHLGISSRGR--FPERRKRIPKGKA 79
           S SSS   + K    +LS    PL   LFSPWSGLKHLGIS+R +  FP  RK   KGK 
Sbjct: 23  SPSSSITSHTKIQSFQLSPMFSPLGRGLFSPWSGLKHLGISTRPKPLFPIDRKGGCKGKV 82

Query: 80  VFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSREFKTT 139
           V+ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLRTFQPTIRELQDVSREFK+T
Sbjct: 83  VYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSREFKST 142

Query: 140 LEREIGLDEISSPVDSSYNSSKSNTYS 165
           LEREIGLD+  SP  + YNS+  N+ S
Sbjct: 143 LEREIGLDDNLSPTQNPYNSNNRNSTS 169

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BLAST of CmoCh16G001220 vs. TrEMBL
Match: V4RLY5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005655mg PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-41
Identity = 106/173 (61.27%), Postives = 124/173 (71.68%), Query Frame = 1


Query: 14  PSSSSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLKHLGISSRGR---FPERRK 73
           PS  S SSS++PI  PKT    LS     L   LFS WSGLKHLGIS   +     E+++
Sbjct: 28  PSVYSLSSSATPISCPKTTNFHLSTTIPQLGSSLFSQWSGLKHLGISVTPKSVNLLEKKR 87

Query: 74  RIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDV 133
           R  +G   +ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLR FQPTIRELQDV
Sbjct: 88  RCKRG-VFYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDV 147

Query: 134 SREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPEEPVAVAEPRG 184
           SREFK+TLEREIGLD+IS+   +  N ++++T S PP V   E+   VA+P G
Sbjct: 148 SREFKSTLEREIGLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADPNG 199

[Close]

BLAST of CmoCh16G001220 vs. TrEMBL
Match: A0A078DQT4_BRANA (BnaC02g15090D protein OS=Brassica napus GN=BnaC02g15090D PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-41
Identity = 109/181 (60.22%), Postives = 131/181 (72.38%), Query Frame = 1


Query: 15  SSSSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLKHLGIS--SRGRFPERRKRI 74
           SS + + S  P  Y KT+K  LS C   L    FSP+ GLKH+GIS   +   PE+++R 
Sbjct: 11  SSPTITKSHLPPSY-KTSKPYLSSCFSLLGSSRFSPYIGLKHMGISISPKSSNPEKKRRC 70

Query: 75  PKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSR 134
            KG  + ASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSR
Sbjct: 71  SKGMVIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSR 130

Query: 135 EFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKP----EEPVAVAEPRGVEAPV 190
           +FK+TLEREIGLDEIS+P  + YN ++ NT + PP  P P    E+PV  ++P   ++P 
Sbjct: 131 DFKSTLEREIGLDEISTP--NVYNQNRMNTGTTPPPPPTPVPSTEDPVTASDPNDAQSPK 188

[Close]

BLAST of CmoCh16G001220 vs. TAIR10
Match: AT5G52440.1 (AT5G52440.1 Bacterial sec-independent translocation protein mttA/Hcf106)

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-39
Identity = 107/193 (55.44%), Postives = 127/193 (65.80%), Query Frame = 1


Query: 13  SPSSSSSSSSSSPILYP------KTAKIRLSLCNLPLRLRLFSPWSGLKHLGIS--SRGR 72
           S SSS + + S    YP      K +K  LS     L    FSP+ GLKHLGIS   +  
Sbjct: 10  SSSSSPTITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSRFSPYIGLKHLGISISPKSS 69

Query: 73  FPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTI 132
            PE+++R  K   + ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLRTFQPTI
Sbjct: 70  NPEKKRRC-KSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTI 129

Query: 133 RELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYS-----NPPFVPKPEEPVAVA 192
           RELQDVSR+FK+TLEREIGLD+IS+P  + YN +++N         PP VP  E PV   
Sbjct: 130 RELQDVSRDFKSTLEREIGLDDISTP--NVYNQNRTNPVQPPPPPPPPSVPSTEAPVTAN 189

[Close]

BLAST of CmoCh16G001220 vs. TAIR10
Match: AT5G28750.1 (AT5G28750.1 Bacterial sec-independent translocation protein mttA/Hcf106)

HSP 1 Score: 51.6 bits (122), Expect = 6.4e-07
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 81  SLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSREFKTTLER 140
           +LFG+G PE  VI  VA L+FGPK L E+ +++GKT+++FQ   +E +    E KT  E 
Sbjct: 62  ALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFES---ELKT--EP 121

Query: 141 EIGLDEISSPVDSSYNSSKSNTYSN 166
           E  + E S    S+    K    S+
Sbjct: 122 EESVAESSQVATSNKEEEKKTEVSS 141

[Close]

BLAST of CmoCh16G001220 vs. NCBI nr
Match: gi|778679659|ref|XP_011651175.1| (PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 6.1e-68
Identity = 152/189 (80.42%), Postives = 160/189 (84.66%), Query Frame = 1


Query: 1   MTSKFPVPTFPFSPSS--------SSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWS 60
           MTSK  V T PF PSS        S S+S+SS ILYP T K  LSLCN PL LRLFSPW+
Sbjct: 1   MTSKISVSTLPFPPSSPTSTCSRLSPSTSTSSSILYPITPKFHLSLCNFPLGLRLFSPWT 60

Query: 61  GLKHLGISSRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART 120
           GLKHLGIS+RGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART
Sbjct: 61  GLKHLGISTRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART 120

Query: 121 LGKTLRTFQPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKP 180
           LGKTLR FQPTIRELQDVSREFKTTLEREIGLDEI S V+SSYN+SKS TYSNPP V K 
Sbjct: 121 LGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEIESSVNSSYNASKS-TYSNPPSVSKA 180

Query: 181 EEPVAVAEP 182
           EE ++VAEP
Sbjct: 181 EE-LSVAEP 187

[Close]

BLAST of CmoCh16G001220 vs. NCBI nr
Match: gi|659077565|ref|XP_008439273.1| (PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 265.4 bits (677), Expect = 8.0e-68
Identity = 153/188 (81.38%), Postives = 161/188 (85.64%), Query Frame = 1


Query: 1   MTSKFPVPTFPFSPSS-----SSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLK 60
           M SK  V TFPFSPS      S S+SSSS ILYP+T K  LSLCN PL LRLFSPW+GLK
Sbjct: 1   MASKISVSTFPFSPSPTCSRLSPSTSSSSSILYPRTPKFHLSLCNFPLGLRLFSPWTGLK 60

Query: 61  HLGISSRGR--FPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTL 120
           HLGIS+RGR  FPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTL
Sbjct: 61  HLGISTRGRSPFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTL 120

Query: 121 GKTLRTFQPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPE 180
           GKTLR FQPTIRELQDVSREFKTTLEREIGLDEI S V+SSYN+SKS TYSNPP V K E
Sbjct: 121 GKTLRAFQPTIRELQDVSREFKTTLEREIGLDEIESSVNSSYNASKS-TYSNPPSVSKAE 180

Query: 181 EPVAVAEP 182
           E ++VAEP
Sbjct: 181 E-LSVAEP 186

[Close]

BLAST of CmoCh16G001220 vs. NCBI nr
Match: gi|659077563|ref|XP_008439272.1| (PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 265.4 bits (677), Expect = 8.0e-68
Identity = 153/188 (81.38%), Postives = 161/188 (85.64%), Query Frame = 1


Query: 1   MTSKFPVPTFPFSPSS-----SSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLK 60
           M SK  V TFPFSPS      S S+SSSS ILYP+T K  LSLCN PL LRLFSPW+GLK
Sbjct: 1   MASKISVSTFPFSPSPTCSRLSPSTSSSSSILYPRTPKFHLSLCNFPLGLRLFSPWTGLK 60

Query: 61  HLGISSRGR--FPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTL 120
           HLGIS+RGR  FPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTL
Sbjct: 61  HLGISTRGRSPFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTL 120

Query: 121 GKTLRTFQPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPE 180
           GKTLR FQPTIRELQDVSREFKTTLEREIGLDEI S V+SSYN+SKS TYSNPP V K E
Sbjct: 121 GKTLRAFQPTIRELQDVSREFKTTLEREIGLDEIESSVNSSYNASKS-TYSNPPSVSKAE 180

Query: 181 EPVAVAEP 182
           E ++VAEP
Sbjct: 181 E-LSVAEP 186

[Close]

BLAST of CmoCh16G001220 vs. NCBI nr
Match: gi|778679653|ref|XP_004140768.2| (PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 1.2e-66
Identity = 153/199 (76.88%), Postives = 162/199 (81.41%), Query Frame = 1


Query: 1   MTSKFPVPTFPFSPSS--------SSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWS 60
           MTSK  V T PF PSS        S S+S+SS ILYP T K  LSLCN PL LRLFSPW+
Sbjct: 1   MTSKISVSTLPFPPSSPTSTCSRLSPSTSTSSSILYPITPKFHLSLCNFPLGLRLFSPWT 60

Query: 61  GLKHLGISSRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART 120
           GLKHLGIS+RGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART
Sbjct: 61  GLKHLGISTRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART 120

Query: 121 LGKTLRTFQPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKP 180
           LGKTLR FQPTIRELQDVSREFKTTLEREIGLDEI S V+SSYN+SKS TYSNPP V K 
Sbjct: 121 LGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEIESSVNSSYNASKS-TYSNPPSVSKA 180

Query: 181 EEPVAVAE--PRGVEAPVA 190
           EE V+ +   P+  E  VA
Sbjct: 181 EEFVSNSPFLPKAEELSVA 198

[Close]

BLAST of CmoCh16G001220 vs. NCBI nr
Match: gi|778679656|ref|XP_011651174.1| (PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 1.2e-66
Identity = 153/199 (76.88%), Postives = 162/199 (81.41%), Query Frame = 1


Query: 1   MTSKFPVPTFPFSPSS--------SSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWS 60
           MTSK  V T PF PSS        S S+S+SS ILYP T K  LSLCN PL LRLFSPW+
Sbjct: 1   MTSKISVSTLPFPPSSPTSTCSRLSPSTSTSSSILYPITPKFHLSLCNFPLGLRLFSPWT 60

Query: 61  GLKHLGISSRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART 120
           GLKHLGIS+RGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART
Sbjct: 61  GLKHLGISTRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVART 120

Query: 121 LGKTLRTFQPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKP 180
           LGKTLR FQPTIRELQDVSREFKTTLEREIGLDEI S V+SSYN+SKS TYSNPP V K 
Sbjct: 121 LGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEIESSVNSSYNASKS-TYSNPPSVSKA 180

Query: 181 EEPVAVAE--PRGVEAPVA 190
           EE V+ +   P+  E  VA
Sbjct: 181 EEFVSNSPFLPKAEELSVA 198

The following BLAST results are available for this feature:

BLAST of CmoCh16G001220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TATB_PEA	4.6e-39	52.91	Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum...	[more]
TATB_ARATH	6.6e-38	55.44	Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis t...	[more]
TATB_ORYSJ	4.3e-29	54.38	Sec-independent protein translocase protein TATB, chloroplastic OS=Oryza sativa ...	[more]
TATB_MAIZE	1.6e-28	59.84	Sec-independent protein translocase protein TATB, chloroplastic OS=Zea mays GN=T...	[more]
TATA_THEEB	6.4e-09	52.46	Sec-independent protein translocase protein TatA OS=Thermosynechococcus elongatu...	[more]

BLAST of CmoCh16G001220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6M5_CUCSA	8.0e-67	76.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183320 PE=4 SV=1	[more]
I3S6U9_LOTJA	6.9e-42	61.63	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A151U6C3_CAJCA	1.5e-41	70.07	Sec-independent protein translocase protein tatA/E isogeny OS=Cajanus cajan GN=K...	[more]
V4RLY5_9ROSI	2.0e-41	61.27	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005655mg PE=4 SV=1	[more]
A0A078DQT4_BRANA	2.0e-41	60.22	BnaC02g15090D protein OS=Brassica napus GN=BnaC02g15090D PE=4 SV=1	[more]

BLAST of CmoCh16G001220 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52440.1	3.7e-39	55.44	Bacterial sec-independent translocation protein mttA/Hcf106	[more]
AT5G28750.1	6.4e-07	38.82	Bacterial sec-independent translocation protein mttA/Hcf106	[more]

BLAST of CmoCh16G001220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679659\|ref\|XP_011651175.1\|	6.1e-68	80.42	PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isofo...	[more]
gi\|659077565\|ref\|XP_008439273.1\|	8.0e-68	81.38	PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isofo...	[more]
gi\|659077563\|ref\|XP_008439272.1\|	8.0e-68	81.38	PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isofo...	[more]
gi\|778679653\|ref\|XP_004140768.2\|	1.2e-66	76.88	PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isofo...	[more]
gi\|778679656\|ref\|XP_011651174.1\|	1.2e-66	76.88	PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isofo...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003369	TatA/B/E
IPR003998	TatB-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0008565	protein transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport
GO:0009306	protein secretion

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009306	protein secretion
biological_process	GO:0044802	single-organism membrane organization
biological_process	GO:0015031	protein transport
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0016020	membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0008565	protein transporter activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G001220.1	CmoCh16G001220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003369	Sec-independent protein translocase protein TatA/B/E	PFAM	PF02416	MttA_Hcf106	coord: 85..135 score: 3.9
IPR003998	Twin-arginine translocation protein TatB-like	PRINTS	PR01506	TATBPROTEIN	coord: 102..121 score: 2.2E-5coord: 82..102 score: 2.
None	No IPR available	PANTHER	PTHR33162	FAMILY NOT NAMED	coord: 6..182 score: 1.2
None	No IPR available	PANTHER	PTHR33162:SF3	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATB, CHLOROPLASTIC	coord: 6..182 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G001220	Cucsa.107980	Cucumber (Gy14) v1	cgycmoB0247
CmoCh16G001220	CmaCh16G001110	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G001220	Cla006162	Watermelon (97103) v1	cmowmB310
CmoCh16G001220	Csa3G183320	Cucumber (Chinese Long) v2	cmocuB317
CmoCh16G001220	MELO3C006928	Melon (DHL92) v3.5.1	cmomeB289
CmoCh16G001220	ClCG05G008230	Watermelon (Charleston Gray)	cmowcgB290
CmoCh16G001220	CSPI03G17120	Wild cucumber (PI 183967)	cmocpiB325
CmoCh16G001220	Lsi05G012110	Bottle gourd (USVL1VR-Ls)	cmolsiB300
CmoCh16G001220	Cp4.1LG14g06150	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G001220	MELO3C006928.2	Melon (DHL92) v3.6.1	cmomedB331
CmoCh16G001220	CsaV3_3G017320	Cucumber (Chinese Long) v3	cmocucB0379
CmoCh16G001220	Cla97C05G090310	Watermelon (97103) v2	cmowmbB331
CmoCh16G001220	Bhi01G000938	Wax gourd	cmowgoB0429
CmoCh16G001220	CsGy3G017180	Cucumber (Gy14) v2	cgybcmoB312
CmoCh16G001220	Carg15121	Silver-seed gourd	carcmoB1326

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G001220	Silver-seed gourd	carcmoB0966
CmoCh16G001220	Silver-seed gourd	carcmoB1002
CmoCh16G001220	Cucumber (Chinese Long) v3	cmocucB0394
CmoCh16G001220	Cucurbita moschata (Rifu)	cmocmoB194
CmoCh16G001220	Cucurbita moschata (Rifu)	cmocmoB236
CmoCh16G001220	Cucurbita moschata (Rifu)	cmocmoB275
CmoCh16G001220	Cucurbita moschata (Rifu)	cmocmoB281
CmoCh16G001220	Cucurbita moschata (Rifu)	cmocmoB297
CmoCh16G001220	Cucurbita maxima (Rimu)	cmacmoB289
CmoCh16G001220	Cucurbita maxima (Rimu)	cmacmoB405
CmoCh16G001220	Cucurbita maxima (Rimu)	cmacmoB587
CmoCh16G001220	Cucurbita maxima (Rimu)	cmacmoB886
CmoCh16G001220	Cucurbita pepo (Zucchini)	cmocpeB303
CmoCh16G001220	Cucurbita pepo (Zucchini)	cmocpeB322
CmoCh16G001220	Bottle gourd (USVL1VR-Ls)	cmolsiB308