CmoCh16G001190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G001190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr16 : 535697 .. 535979 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGGCTGGAGAAGGACAAGGAACTATTATTCTTCAGTTCATTATCATCTCATTGATGTTTTGTTCTTTGTTTGAATGGGTGCAGCTGTCAATTATGTTGCTTTATCTGATGCTCTTGGTGTTTCTTCATCAGTATTAGCAGCTGGACTTGCTGCGGATAATGCAATTTGTGCAGCGTATTTTGCAACATTGTTTGCGTTAGCATCTCAAGTACCTCCTCAACCAACGACGTTTAACGATGCTACGGGTATGAAATTCCACTTGTTTTGGCTTGTATAA

mRNA sequence

ATGGCGAGGCTGGAGAAGGACAAGGAACTATTATTCTTCACTGTCAATTATGTTGCTTTATCTGATGCTCTTGGTGTTTCTTCATCAGTATTAGCAGCTGGACTTGCTGCGGATAATGCAATTTGTGCAGCGTATTTTGCAACATTGTTTGCGTTAGCATCTCAAGTACCTCCTCAACCAACGACGTTTAACGATGCTACGGGTATGAAATTCCACTTGTTTTGGCTTGTATAA

Coding sequence (CDS)

ATGGCGAGGCTGGAGAAGGACAAGGAACTATTATTCTTCACTGTCAATTATGTTGCTTTATCTGATGCTCTTGGTGTTTCTTCATCAGTATTAGCAGCTGGACTTGCTGCGGATAATGCAATTTGTGCAGCGTATTTTGCAACATTGTTTGCGTTAGCATCTCAAGTACCTCCTCAACCAACGACGTTTAACGATGCTACGGGTATGAAATTCCACTTGTTTTGGCTTGTATAA

Homology

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BLAST of CmoCh16G001190 vs. TrEMBL
Match: A0A0A0L600_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183390 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-14
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFNDATG 69
           VNYVA+SDALGVS SVLAAGLAADN ICA YFATLFALAS+VPP+PTT ++  G
Sbjct: 225 VNYVAISDALGVSPSVLAAGLAADNVICAVYFATLFALASKVPPEPTTLDNGVG 278

[Close]

BLAST of CmoCh16G001190 vs. TrEMBL
Match: M5XCD2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005389mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFND 66
           VNYVA++DALGVS S+LAAGLAADN ICA YF+TLFALAS+VPP+P+T +D
Sbjct: 225 VNYVAIADALGVSPSILAAGLAADNVICAVYFSTLFALASKVPPEPSTSDD 275

[Close]

BLAST of CmoCh16G001190 vs. TrEMBL
Match: E0CUW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01000 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-12
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFNDATGM 70
           VNYVA+S+ALGVS SVLAAGLAADN ICA YF TLFALAS++PP+ +T  + TGM
Sbjct: 211 VNYVAISEALGVSRSVLAAGLAADNVICAVYFTTLFALASKIPPEDSTSANDTGM 265

[Close]

BLAST of CmoCh16G001190 vs. TrEMBL
Match: B9RIU1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582790 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-11
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFNDATGMK 71
           VNYVA++DALGVSSSVLA+GLAADN ICA YF TLFALAS++P + +T ++  GM+
Sbjct: 224 VNYVAIADALGVSSSVLASGLAADNVICAVYFTTLFALASKIPAETSTSSNEDGME 279

[Close]

BLAST of CmoCh16G001190 vs. TrEMBL
Match: V4SE55_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004922mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-11
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFNDATGM 70
           VNYVA+SDALGVSSSVLAAGLAADN ICA YF TLFALAS +P + +T  D   M
Sbjct: 228 VNYVAISDALGVSSSVLAAGLAADNVICAVYFTTLFALASNIPAESSTSVDDVSM 282

[Close]

BLAST of CmoCh16G001190 vs. TAIR10
Match: AT5G52540.1 (AT5G52540.1 Protein of unknown function (DUF819))

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-13
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVP----PQPTTFNDA 67
           VNYVA+S+ALGV+ SVLAAGLAADN ICA YF TLFAL S++P    P PTT  DA
Sbjct: 220 VNYVAISNALGVTPSVLAAGLAADNVICAVYFTTLFALGSKIPAEAVPPPTTIVDA 275

[Close]

BLAST of CmoCh16G001190 vs. TAIR10
Match: AT5G24000.1 (AT5G24000.1 Protein of unknown function (DUF819))

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-09
Identity = 27/46 (58.70%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 14  TVNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQ 60
           ++N+VA+S+AL +S SV+AAG+A DN ICA +F  LFALAS++PP+
Sbjct: 203 SLNFVAISEALQISPSVIAAGVAVDNVICALHFMVLFALASKIPPE 248

[Close]

BLAST of CmoCh16G001190 vs. NCBI nr
Match: gi|449445995|ref|XP_004140757.1| (PREDICTED: uncharacterized protein LOC101211894 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-14
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFNDATG 69
           VNYVA+SDALGVS SVLAAGLAADN ICA YFATLFALAS+VPP+PTT ++  G
Sbjct: 225 VNYVAISDALGVSPSVLAAGLAADNVICAVYFATLFALASKVPPEPTTLDNGVG 278

[Close]

BLAST of CmoCh16G001190 vs. NCBI nr
Match: gi|645258351|ref|XP_008234847.1| (PREDICTED: uncharacterized protein LOC103333733 isoform X1 [Prunus mume])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFND 66
           VNYVA++DALGVS S+LAAGLAADN ICA YF+TLFALAS+VPP+P+T +D
Sbjct: 225 VNYVAIADALGVSPSILAAGLAADNVICAVYFSTLFALASKVPPEPSTSDD 275

[Close]

BLAST of CmoCh16G001190 vs. NCBI nr
Match: gi|659077610|ref|XP_008439291.1| (PREDICTED: uncharacterized protein LOC103484119 isoform X2 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFND 66
           VNYVA+SDALGVS SVLAAGLAADN ICA YFATLFALAS+VPP+ TT ++
Sbjct: 134 VNYVAISDALGVSPSVLAAGLAADNVICAVYFATLFALASKVPPESTTLDN 184

[Close]

BLAST of CmoCh16G001190 vs. NCBI nr
Match: gi|595999234|ref|XP_007217974.1| (hypothetical protein PRUPE_ppa005389mg [Prunus persica])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFND 66
           VNYVA++DALGVS S+LAAGLAADN ICA YF+TLFALAS+VPP+P+T +D
Sbjct: 225 VNYVAIADALGVSPSILAAGLAADNVICAVYFSTLFALASKVPPEPSTSDD 275

[Close]

BLAST of CmoCh16G001190 vs. NCBI nr
Match: gi|645258355|ref|XP_008234848.1| (PREDICTED: uncharacterized protein LOC103333733 isoform X2 [Prunus mume])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 15  VNYVALSDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFND 66
           VNYVA++DALGVS S+LAAGLAADN ICA YF+TLFALAS+VPP+P+T +D
Sbjct: 129 VNYVAIADALGVSPSILAAGLAADNVICAVYFSTLFALASKVPPEPSTSDD 179

The following BLAST results are available for this feature:

BLAST of CmoCh16G001190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G001190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L600_CUCSA	2.4e-14	79.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183390 PE=4 SV=1	[more]
M5XCD2_PRUPE	1.3e-12	76.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005389mg PE=4 SV=1	[more]
E0CUW7_VITVI	3.8e-12	72.73	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01000 PE=4 SV=...	[more]
B9RIU1_RICCO	1.4e-11	67.86	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582790 PE=4 SV=1	[more]
V4SE55_9ROSI	2.4e-11	72.73	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004922mg PE=4 SV=1	[more]

BLAST of CmoCh16G001190 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52540.1	2.3e-13	69.64	Protein of unknown function (DUF819)	[more]
AT5G24000.1	2.7e-09	58.70	Protein of unknown function (DUF819)	[more]

BLAST of CmoCh16G001190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445995\|ref\|XP_004140757.1\|	3.4e-14	79.63	PREDICTED: uncharacterized protein LOC101211894 [Cucumis sativus]	[more]
gi\|645258351\|ref\|XP_008234847.1\|	1.9e-12	76.47	PREDICTED: uncharacterized protein LOC103333733 isoform X1 [Prunus mume]	[more]
gi\|659077610\|ref\|XP_008439291.1\|	1.9e-12	80.39	PREDICTED: uncharacterized protein LOC103484119 isoform X2 [Cucumis melo]	[more]
gi\|595999234\|ref\|XP_007217974.1\|	1.9e-12	76.47	hypothetical protein PRUPE_ppa005389mg [Prunus persica]	[more]
gi\|645258355\|ref\|XP_008234848.1\|	1.9e-12	76.47	PREDICTED: uncharacterized protein LOC103333733 isoform X2 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008537	DUF819

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G001190.1	CmoCh16G001190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008537	Protein of unknown function DUF819	PFAM	PF05684	DUF819	coord: 15..54 score: 9.1
None	No IPR available	PANTHER	PTHR34289	FAMILY NOT NAMED	coord: 15..62 score: 1.2
None	No IPR available	PANTHER	PTHR34289:SF1	SUBFAMILY NOT NAMED	coord: 15..62 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G001190	Cp4.1LG14g06320	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G001190	Carg08401	Silver-seed gourd	carcmoB0966

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G001190	CmoCh02G010940	Cucurbita moschata (Rifu)	cmocmoB281

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G001190	Cucumber (Gy14) v2	cgybcmoB312
CmoCh16G001190	Melon (DHL92) v3.6.1	cmomedB331
CmoCh16G001190	Silver-seed gourd	carcmoB1002
CmoCh16G001190	Silver-seed gourd	carcmoB1326
CmoCh16G001190	Cucumber (Chinese Long) v3	cmocucB0379
CmoCh16G001190	Cucumber (Chinese Long) v3	cmocucB0394
CmoCh16G001190	Watermelon (97103) v2	cmowmbB331
CmoCh16G001190	Wax gourd	cmowgoB0429
CmoCh16G001190	Cucurbita moschata (Rifu)	cmocmoB194
CmoCh16G001190	Cucurbita moschata (Rifu)	cmocmoB236
CmoCh16G001190	Cucurbita moschata (Rifu)	cmocmoB275
CmoCh16G001190	Cucurbita moschata (Rifu)	cmocmoB297
CmoCh16G001190	Cucumber (Gy14) v1	cgycmoB0247
CmoCh16G001190	Cucurbita maxima (Rimu)	cmacmoB289
CmoCh16G001190	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G001190	Cucurbita maxima (Rimu)	cmacmoB405
CmoCh16G001190	Cucurbita maxima (Rimu)	cmacmoB587
CmoCh16G001190	Cucurbita maxima (Rimu)	cmacmoB886
CmoCh16G001190	Wild cucumber (PI 183967)	cmocpiB325
CmoCh16G001190	Cucumber (Chinese Long) v2	cmocuB317
CmoCh16G001190	Melon (DHL92) v3.5.1	cmomeB289
CmoCh16G001190	Watermelon (Charleston Gray)	cmowcgB290
CmoCh16G001190	Watermelon (97103) v1	cmowmB310
CmoCh16G001190	Cucurbita pepo (Zucchini)	cmocpeB303
CmoCh16G001190	Cucurbita pepo (Zucchini)	cmocpeB322
CmoCh16G001190	Bottle gourd (USVL1VR-Ls)	cmolsiB300
CmoCh16G001190	Bottle gourd (USVL1VR-Ls)	cmolsiB308