CmoCh16G000620 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G000620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Vesicle transport protein, SFT2-like
Location	Cmo_Chr16 : 277507 .. 280867 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGGAATTCCAGCCGAGACGTATTTGTCGACGACGAAGAGTGTGGTCAGAGCTTGTTGGATGAAGATTCAGAAGATCTATGCTCCCTAACTCCTGTACAGGTACTTCAAACAACCACCACAGAGCTCCGCTTGTGGAAAGTCTTATGGCTTTTGCTCTAGTTTTTCTTTTTGTTTTTTTTCTTTTTGTTCGGTTTTCATACTGTTTTGGTCTTTTGCTGATCAGAGACTTTACGGTTTTGGAGGCTGCTTGATCGGGGGCGTGGTTTTCATGATTTTGGTATGAACGAACATTTAACCTACCTCTACATCTAATGCAATTTCATATGTGTTTATGTGATATGCATCTTCTGTATATGGGGAACTTTGATGACAATTTTAGATTTGAGCCTCAAGTTACGATCTGGGTAGGATTGGTAACGGGAGGTTTTCTTTATTTCCATTATTATTTTGGAATTTAATAGGATTTATATTATCTAACTATCCACCGGTTGGTCCTTGAGGCTTCCAGAATAAATTGGAAAACACAACAAAGAAGGAAGCCGGGATTGAATTTGGATAGAAAGCTGAGGAATTTCCTTTAAGAAGGGAATACTAAAGAAAAATTAAGTCGCCAGGTCAATTGGGAGATTGTTTCTACCAATCGAAAATGGGGGACTCTTGATTGGGTTTAAGGAAGAAAGTAGGACAATAAATATCAAAAGGATATGGCGACTTTTACCAACTCTGATGAATCGATGGGAGAGTAAGTGGATGTTTTACAAGTAAGGGGGATTGGGTGCTACTGCTATCAAAGTCCATGGTCTAATATTACAAAACTGAGATGATTTATTGAGGCATTCACTAGCATTGATTTGGCAAATTTAAGGAAAACCTTGTTTTAGAGAGACTACTGGGTAGAGTAGTATCTCTGTTGGCAAGATTTTTAAGGTTGTTTATAGCTTCACCATATAGAAAAGGATCATATCAAATGGATATGGCGGCTTTCTGACTTTGATGAATCGTGGAATGGGATTCTATCCAGTACATAAGGGAGAATACCAAGGATGTTTTATAAGTAGGGAGCGTTGGGGACTACTGTTATCAAAGTCCATGGTCCAATATTACAAAACTGAGATGATTTATAGAGGATTAGCTGGCATTGAGGTGGCAAATTGAAGGAGAACCTTATTCTATAGAGTCCGCTGGGTAGGGGAGTCATCTCTGTTGGCAAGATTTTTAAGGTATTTGTAGCTTCACCAGATAGAAAATGACAATAAGTAAAGCTTGGGAGGATGTTCTTTGAACATGACAACCACTAAGGACATAACTGATCCGGAAATGGGTATTGAGAAAGGAGTTGTCTACAGCAATCTAGAAGGAAAGAATCCCTAAAGAAGTCAACTTCTTTATGTGGACATTATGGCATGATGGTATAAATTCAGGGGAGGGATTCATAGGAGATATATGATTTAAAAATCCAGTTAGTTTGTCCTTTGTAAGCTGTGTTGCGAATCTCATCTCAATAAAATGCAGTGCACCTAGGTTCTTGACAAGTCACTCAAAGAGGATATTATCCAATTGTTATCGAGCTGCAGAATTGAGAAGAAAGCTAAAACCATATGGGTTAATGCAGTGAAGGCATTCTCCTGGGGTACTAGTGAATGCAGGAGTCACAAACGATAATTTTGTTCATTATTGGATTATCACAATCAGTAAACAATGGGACAATTCGAGGGTTAAAGCTAATTCTCAATAGTATAGTAAATTGCAGGCGATTGACACTCTTAGATTGTGGGATGGAGTTGACAAAGCTTATTGGTCTCTAGAAAATTCTGGAATTTTTCTTCTCGCTCAACCTTTATTAAGTCAACCAAAACTAGTCAAATCTAAGAGTGTTAGAAACCAATATAGTAAATTGCAGGCGATTGACATTCTGGAGTTTTTTTCTTCATCAGTGAATTTTTTATTTTTTACTTTTTTTTAATCTCGCGTTCTTTTCTATTTTTATGATTCTAGATGAACATAGCCCAGCTTCGTTGACTTCTATTTTGCTCGTTATCTGAAATCGTGTTTATTAAGTGAGACATTTGATGCGTTTGCTACATTTTCTTCTTTCTGCAGTCATTGCTTGTTTTTGCTAAGCCACTCAAATTTGCTGTCCTATTTACATTTGGCAATGTTTTAGCCGTCGGAAGGTACAACCAATTAAATTGTTGTTACATTCTACATGTGTCGGCAATTAAGAATTATTATTTGGAGGCGCACTTTTGTTCACTTCCACGGCATTCTGGCTTGCATCTAATACTTCTTGTTATCTTCGATCTCATATTCTTTCAAGAAGAAGCTTATTTGTGTACAAACAAAAGGAAGATAATCGAGGGGGGAAACTTTTAATGTACTTTCAATATGTTGTTCCTTTTCATTGAGGTGTTGATATTCTAAATTGCATCTTATTTGGCAGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATAAGACTGATGTTTGATTCTGTCCGTATTTATGCGACAGCTATTTACCTGGGATGTGTTGTTCTATCTCTTATATGTGCTCTCGGGGTACGTAACGATTCTGACTATATGACATTAGAAGGGAAAACAGACTTAAATTACTAAGGCATTGAGATATTCAATGAACACTCTTCAATTTATCTGTGGAACACAGTACTAATGGCGTTTCCAATTAGGTCCCTCTTCATCTGTTCCACAAGGTTTCCAAATACAGTTCTAGCATTGTTTTTCTTTAGCAAATAAAGCATGTATCGGCCTGGGATGGAATTCTGCAAACAGTTAATGCCTCATATTTAGTTTTTTAAATGAGTTTCCTTGCTATTCATTTTTCAGATCCACAATAAGATCTTGACAGTGATTGCAATGATAAGTGAGATATGTGCACTCATATGGTACGTTTACCTTTATCATTGGCATTCCTCCATTCGATTCAAATTTCATTTAAAACTAGAGGATGAAAACTTTCCCACTGGATGAAAATGTGTTCAATTATATCTTGCGAGACCTATCTTGAATCGAAACTAGATTCGGCCATGACTTCCTCGGTTTATTATGTTCCAGGTATACTTTGAGCTATATTCCTTTTGCCCGGAGGATGGTCTCTGAAATGATGAAACGATTTTGTGACACAGAACTATAGACAATGAAAGTTGCGGTGATGATTGATGATTCGATGTCTTCAAGATCTGGGACTGCCTTTTGTCTTCATTGTTTTTACATTTTAGTGAGCACAAGATCAGTTGGAGATTTGTTTTTTTTTTTGGTTGGAGTTGATTTGTCCACGAACACGTATAATCCAACGCCAGTTCAATGCTTGTGCTAAATTTCTAAATATAACATCATTC

mRNA sequence

ATGTGGAGGAATTCCAGCCGAGACGTATTTGTCGACGACGAAGAGTGTGGTCAGAGCTTGTTGGATGAAGATTCAGAAGATCTATGCTCCCTAACTCCTGTACAGAGACTTTACGGTTTTGGAGGCTGCTTGATCGGGGGCGTGGTTTTCATGATTTTGTCATTGCTTGTTTTTGCTAAGCCACTCAAATTTGCTGTCCTATTTACATTTGGCAATGTTTTAGCCGTCGGAAGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATAAGACTGATGTTTGATTCTGTCCGTATTTATGCGACAGCTATTTACCTGGGATGTGTTGTTCTATCTCTTATATGTGCTCTCGGGATCCACAATAAGATCTTGACAGTGATTGCAATGATAAGTGAGATATGTGCACTCATATGGTATACTTTGAGCTATATTCCTTTTGCCCGGAGGATGGTCTCTGAAATGATGAAACGATTTTGTGACACAGAACTATAGACAATGAAAGTTGCGGTGATGATTGATGATTCGATGTCTTCAAGATCTGGGACTGCCTTTTGTCTTCATTGTTTTTACATTTTAGTGAGCACAAGATCAGTTGGAGATTTGTTTTTTTTTTTGGTTGGAGTTGATTTGTCCACGAACACGTATAATCCAACGCCAGTTCAATGCTTGTGCTAAATTTCTAAATATAACATCATTC

Coding sequence (CDS)

ATGTGGAGGAATTCCAGCCGAGACGTATTTGTCGACGACGAAGAGTGTGGTCAGAGCTTGTTGGATGAAGATTCAGAAGATCTATGCTCCCTAACTCCTGTACAGAGACTTTACGGTTTTGGAGGCTGCTTGATCGGGGGCGTGGTTTTCATGATTTTGTCATTGCTTGTTTTTGCTAAGCCACTCAAATTTGCTGTCCTATTTACATTTGGCAATGTTTTAGCCGTCGGAAGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATAAGACTGATGTTTGATTCTGTCCGTATTTATGCGACAGCTATTTACCTGGGATGTGTTGTTCTATCTCTTATATGTGCTCTCGGGATCCACAATAAGATCTTGACAGTGATTGCAATGATAAGTGAGATATGTGCACTCATATGGTATACTTTGAGCTATATTCCTTTTGCCCGGAGGATGGTCTCTGAAATGATGAAACGATTTTGTGACACAGAACTATAG

Homology

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BLAST of CmoCh16G000620 vs. Swiss-Prot
Match: SFT2B_HUMAN (Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-17
Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 1


Query: 20  LLDEDSEDLCSLTPV---------QRLYGFGGCLIGGVVFMILSLLVFAKPLK----FAV 79
           L  +D+ED   L+ V          R+ GF  C   G++  +L  ++   P K    FAV
Sbjct: 8   LSGQDTEDRSGLSEVVEASSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKGLHLFAV 67

Query: 80  LFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVI 139
            +TFGN+ ++GST FL GP +Q++ MF+  R+ AT + L C  L+L  A   HNK L +I
Sbjct: 68  FYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHNKGLALI 127

Query: 140 AMISEICALIWYTLSYIPFARRMVSE 153
             I +  AL WY+LS+IPFAR  V +
Sbjct: 128 FCILQSLALTWYSLSFIPFARDAVKK 153

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BLAST of CmoCh16G000620 vs. Swiss-Prot
Match: SFT2B_MOUSE (Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-16
Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = 1


Query: 20  LLDEDSEDLCSLTPV---------QRLYGFGGCLIGGVVFMILSLLVFAKPLK----FAV 79
           L  +D+ED   L+ V          R+ GF  C   G++  +L  L+   P K    FAV
Sbjct: 8   LSGQDTEDRSGLSEVVEASSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKGLGLFAV 67

Query: 80  LFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVI 139
            +T GN++++GST FL GP +Q++ MF+  R+ AT + L C  L+L C+  + NK L +I
Sbjct: 68  FYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTL-CSAFLWNKGLALI 127

Query: 140 AMISEICALIWYTLSYIPFARRMVSE 153
             I +  AL WY+LSYIP+AR  V +
Sbjct: 128 FCILQSLALTWYSLSYIPYARDAVKK 152

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BLAST of CmoCh16G000620 vs. Swiss-Prot
Match: SFT2A_HUMAN (Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.8e-16
Identity = 60/142 (42.25%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 12  DDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILS--LLVFAKPLK-FAVLF 71
           DDEE G   L     D  SL+   RL  F  C + GV F IL   LL     +K FAV +
Sbjct: 12  DDEEQG---LTAQVLDASSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGGIKLFAVFY 71

Query: 72  TFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVIAM 131
           T GN+ A+ ST FL GP +Q++ MF++ R+ AT + L C + +L  AL  H K L V+  
Sbjct: 72  TLGNLAALASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFC 131

Query: 132 ISEICALIWYTLSYIPFARRMV 151
           I +  ++ WY+LSYIP+AR  V
Sbjct: 132 ILQFLSMTWYSLSYIPYARDAV 150

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BLAST of CmoCh16G000620 vs. Swiss-Prot
Match: SFT2A_RAT (Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-15
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 1


Query: 12  DDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILS--LLVFAKPLK-FAVLF 71
           DDEE G   L     D  SL+   RL  F  C + G+ F IL   LL     +K FAV +
Sbjct: 12  DDEEQG---LTAQVLDASSLSFNTRLKWFVICFVAGIFFSILGTGLLWLPNGVKLFAVFY 71

Query: 72  TFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVIAM 131
           T GN+ A+ ST FL GP +Q++ MF++ R+ AT I L C+V +L  AL    K L ++  
Sbjct: 72  TLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFC 131

Query: 132 ISEICALIWYTLSYIPFARRMV 151
           I +  ++ WY+LSYIP+AR  V
Sbjct: 132 ILQFLSMTWYSLSYIPYARDAV 150

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BLAST of CmoCh16G000620 vs. Swiss-Prot
Match: SFT2A_MOUSE (Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.4e-15
Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = 1


Query: 12  DDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILS--LLVFAKPLK-FAVLF 71
           DDEE G   L     D  SL+   RL  F  C + G+ F  L   LL     +K FAV +
Sbjct: 12  DDEEQG---LTAQVLDASSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNGMKLFAVFY 71

Query: 72  TFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVIAM 131
           T GN+ A+ ST FL GP +Q++ MF++ R+ AT I L C+V +L  AL    K L ++  
Sbjct: 72  TLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFC 131

Query: 132 ISEICALIWYTLSYIPFARRMV 151
           I +  ++ WY+LSYIP+AR  V
Sbjct: 132 ILQFLSMTWYSLSYIPYARDAV 150

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BLAST of CmoCh16G000620 vs. TrEMBL
Match: A0A0A0LC39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603050 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.1e-64
Identity = 136/162 (83.95%), Postives = 144/162 (88.89%), Query Frame = 1


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60
           MW+  S  VFVD+E   QSLLDEDSEDLCSLT VQRLY FGGCL GGVV MILSLLVFAK
Sbjct: 1   MWK-LSEGVFVDEER-SQSLLDEDSEDLCSLTAVQRLYAFGGCLTGGVVCMILSLLVFAK 60

Query: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHN 120
           PLK AVLF FGNVLAVGST FLFGP QQIR+MFDSVRI ATAIYLGCVVL+LICAL IHN
Sbjct: 61  PLKLAVLFAFGNVLAVGSTTFLFGPRQQIRMMFDSVRILATAIYLGCVVLALICALWIHN 120

Query: 121 KILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           KILTVIA+ISEICALIWY+LSYIPFARRMVS++M RFCDTEL
Sbjct: 121 KILTVIAIISEICALIWYSLSYIPFARRMVSQLMIRFCDTEL 160

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BLAST of CmoCh16G000620 vs. TrEMBL
Match: A0A061G295_THECC (Got1/Sft2-like vescicle transport protein family OS=Theobroma cacao GN=TCM_015381 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.1e-53
Identity = 109/162 (67.28%), Postives = 132/162 (81.48%), Query Frame = 1


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60
           MW+        D+EE  +S L E+SE  CSL+P QR+Y F  CL+ G+V M LSL+VF K
Sbjct: 1   MWKVKEYMSGGDEEERAESFLVEESEGFCSLSPTQRMYAFAACLLSGLVLMFLSLIVFVK 60

Query: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHN 120
           P+KFA+LFTFGNVLAVGSTAFL GP QQ+R+MFDSVR+YATAIY+G VVL+LICAL I +
Sbjct: 61  PIKFALLFTFGNVLAVGSTAFLMGPEQQLRMMFDSVRLYATAIYIGFVVLALICALWIQS 120

Query: 121 KILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           KILT++A+I EICALIWY LSYIPFARR+VS++M RFCDTEL
Sbjct: 121 KILTLLAIICEICALIWYCLSYIPFARRIVSDLMIRFCDTEL 162

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BLAST of CmoCh16G000620 vs. TrEMBL
Match: A0A0L9V0C8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g211500 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-52
Identity = 109/162 (67.28%), Postives = 133/162 (82.10%), Query Frame = 1


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60
           MW N  R + V +EE G+SLL EDS  LCSL+  QR+YGF    + GVV M+LS++VF K
Sbjct: 1   MW-NIGRSLTVGNEEEGESLLGEDSGGLCSLSTTQRIYGFAASFVAGVVCMLLSMIVFVK 60

Query: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHN 120
           P+KFAVLFTFGN+LAVGST FL GP QQ+ +MFD VR++ATAIYLGCVV++LICAL IH+
Sbjct: 61  PIKFAVLFTFGNLLAVGSTGFLLGPAQQLGMMFDPVRVFATAIYLGCVVIALICALWIHS 120

Query: 121 KILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           K+LT++A+I EI ALIWY+LSYIPFARRMVSE+M R CDTEL
Sbjct: 121 KVLTIVAVIIEIGALIWYSLSYIPFARRMVSELMIRLCDTEL 161

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BLAST of CmoCh16G000620 vs. TrEMBL
Match: A0A0S3RN16_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G190300 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-52
Identity = 109/162 (67.28%), Postives = 133/162 (82.10%), Query Frame = 1


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60
           MW N  R + V +EE G+SLL EDS  LCSL+  QR+YGF    + GVV M+LS++VF K
Sbjct: 1   MW-NIGRSLTVGNEEEGESLLGEDSGGLCSLSTTQRIYGFAASFVAGVVCMLLSMIVFVK 60

Query: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHN 120
           P+KFAVLFTFGN+LAVGST FL GP QQ+ +MFD VR++ATAIYLGCVV++LICAL IH+
Sbjct: 61  PIKFAVLFTFGNLLAVGSTGFLLGPAQQLGMMFDPVRVFATAIYLGCVVIALICALWIHS 120

Query: 121 KILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           K+LT++A+I EI ALIWY+LSYIPFARRMVSE+M R CDTEL
Sbjct: 121 KVLTIVAVIIEIGALIWYSLSYIPFARRMVSELMIRLCDTEL 161

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BLAST of CmoCh16G000620 vs. TrEMBL
Match: A0A059DEZ9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01469 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-52
Identity = 107/162 (66.05%), Postives = 135/162 (83.33%), Query Frame = 1


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60
           MW+  S+ +F  +EE    +L EDS+ +CSL+P+QR+Y FG CL+ G+V M LSL+VFAK
Sbjct: 1   MWK-LSQSLFGGEEEGQDEVLAEDSDGICSLSPMQRVYAFGACLLVGLVCMFLSLIVFAK 60

Query: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHN 120
           P+KFAV+FT GN+LAVGST FL G  QQ+R+MFDS R++ATAIYLGCV L+LICAL IH+
Sbjct: 61  PIKFAVVFTCGNLLAVGSTVFLIGAAQQMRMMFDSTRVFATAIYLGCVALALICALWIHS 120

Query: 121 KILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           K+LT+IA+I EICALIWY+LSYIPFARRMVS++M R CDTEL
Sbjct: 121 KVLTIIAIIIEICALIWYSLSYIPFARRMVSDLMVRLCDTEL 161

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BLAST of CmoCh16G000620 vs. TAIR10
Match: AT5G24170.1 (AT5G24170.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-49
Identity = 97/151 (64.24%), Postives = 122/151 (80.79%), Query Frame = 1


Query: 12  DDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAKPLKFAVLFTFG 71
           D +    S L++ SE LC+L+  QR+YGF   L  G++ M LS++VF  P+KFA+LFTFG
Sbjct: 13  DGDGTTDSFLEDGSEGLCALSTTQRMYGFAASLATGLLLMFLSMIVFGIPIKFALLFTFG 72

Query: 72  NVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVIAMISE 131
           NVLA+GSTAFL GP QQ+ +MFD VR  AT+IY+GCVV++LICAL IH+KILTV+A++ E
Sbjct: 73  NVLAIGSTAFLMGPEQQMSMMFDPVRFLATSIYIGCVVVALICALLIHSKILTVLAILCE 132

Query: 132 ICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           ICALIWY+LSYIPFARRMVSE+M R CDTEL
Sbjct: 133 ICALIWYSLSYIPFARRMVSEIMIRLCDTEL 163

[Close]

BLAST of CmoCh16G000620 vs. TAIR10
Match: AT5G23550.1 (AT5G23550.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 151.0 bits (380), Expect = 6.4e-37
Identity = 78/149 (52.35%), Postives = 104/149 (69.80%), Query Frame = 1


Query: 13  DEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAKPLKFAVLFTFGN 72
           DEE   S + ED    C+LT  QR YGF  CL  G+   +LS+LVF  P+KF + FT GN
Sbjct: 27  DEESSLSFM-EDLNRNCALTTKQRFYGFAICLSAGLTCTLLSMLVFFNPVKFGITFTLGN 86

Query: 73  VLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVIAMISEI 132
           ++A+GSTAFL GP +Q+ +M D  RIYATA+YL  ++++L CAL + NK+LT++A+I E 
Sbjct: 87  LMALGSTAFLIGPQRQVTMMLDPARIYATALYLASIIIALFCALYVRNKLLTLLAIILEF 146

Query: 133 CALIWYTLSYIPFARRMVSEMMKRFCDTE 162
             LIWY+LSYIPFAR MVS++     DTE
Sbjct: 147 TGLIWYSLSYIPFARTMVSKIFMTCFDTE 174

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BLAST of CmoCh16G000620 vs. NCBI nr
Match: gi|659082018|ref|XP_008441622.1| (PREDICTED: vesicle transport protein SFT2B [Cucumis melo])

HSP 1 Score: 273.1 bits (697), Expect = 3.2e-70
Identity = 143/162 (88.27%), Postives = 150/162 (92.59%), Query Frame = 1


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60
           MW+ S   VFVDDEE  QSLLDEDSEDLCSLTPVQRLY FGGCL GGVV MILSLLVFAK
Sbjct: 1   MWKLSD-GVFVDDEERSQSLLDEDSEDLCSLTPVQRLYAFGGCLTGGVVCMILSLLVFAK 60

Query: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHN 120
           PLKFAVLFTFGNVLAVGSTAFLFGPGQQIR+MFDSVRI+ATAIYLGCVVL+LICAL IHN
Sbjct: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRMMFDSVRIFATAIYLGCVVLALICALWIHN 120

Query: 121 KILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           KILTV AMISEICALIWY+LSYIPFARRMVS++M RFCDTEL
Sbjct: 121 KILTVFAMISEICALIWYSLSYIPFARRMVSQLMVRFCDTEL 161

[Close]

BLAST of CmoCh16G000620 vs. NCBI nr
Match: gi|449455944|ref|XP_004145710.1| (PREDICTED: vesicle transport protein SFT2B [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 4.4e-64
Identity = 136/162 (83.95%), Postives = 144/162 (88.89%), Query Frame = 1


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60
           MW+  S  VFVD+E   QSLLDEDSEDLCSLT VQRLY FGGCL GGVV MILSLLVFAK
Sbjct: 1   MWK-LSEGVFVDEER-SQSLLDEDSEDLCSLTAVQRLYAFGGCLTGGVVCMILSLLVFAK 60

Query: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHN 120
           PLK AVLF FGNVLAVGST FLFGP QQIR+MFDSVRI ATAIYLGCVVL+LICAL IHN
Sbjct: 61  PLKLAVLFAFGNVLAVGSTTFLFGPRQQIRMMFDSVRILATAIYLGCVVLALICALWIHN 120

Query: 121 KILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           KILTVIA+ISEICALIWY+LSYIPFARRMVS++M RFCDTEL
Sbjct: 121 KILTVIAIISEICALIWYSLSYIPFARRMVSQLMIRFCDTEL 160

[Close]

BLAST of CmoCh16G000620 vs. NCBI nr
Match: gi|1009122809|ref|XP_015878202.1| (PREDICTED: vesicle transport protein SFT2B [Ziziphus jujuba])

HSP 1 Score: 226.9 bits (577), Expect = 2.6e-56
Identity = 112/162 (69.14%), Postives = 139/162 (85.80%), Query Frame = 1


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60
           MW+  ++ +   D++  +S  D++S+ LCSL+  QR+YGF  CL  G+V MILSL+VFAK
Sbjct: 1   MWQKLNQSLSGVDDDGRESFFDDESDGLCSLSATQRMYGFAACLSAGLVLMILSLIVFAK 60

Query: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHN 120
           P+KFA+LFTFGNVLAVGSTAFL G GQQ+R+MFDSVRIYATAIYLGCVV++LICAL IH+
Sbjct: 61  PIKFAILFTFGNVLAVGSTAFLLGLGQQMRMMFDSVRIYATAIYLGCVVIALICALWIHS 120

Query: 121 KILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           KILT++A+ISEICAL WY+LSYIPFARRMVSE+M R+CDTEL
Sbjct: 121 KILTIVAIISEICALFWYSLSYIPFARRMVSELMIRWCDTEL 162

[Close]

BLAST of CmoCh16G000620 vs. NCBI nr
Match: gi|645258117|ref|XP_008234734.1| (PREDICTED: vesicle transport protein SFT2B [Prunus mume])

HSP 1 Score: 225.7 bits (574), Expect = 5.8e-56
Identity = 110/162 (67.90%), Postives = 137/162 (84.57%), Query Frame = 1


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60
           MW   ++ +   +EE G+  LDE+S+  C+L+  QR+YGF  CL+ G+V M LSL+VFAK
Sbjct: 1   MWAKLNQSMLEGNEEGGEGFLDEESDGFCALSATQRMYGFAACLLAGLVCMFLSLIVFAK 60

Query: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHN 120
           P+KFAVLFTFGN+LAVGSTAFLFGPGQQ+R+MFDSVR+YATAIYLGCVV++LICAL IH+
Sbjct: 61  PIKFAVLFTFGNLLAVGSTAFLFGPGQQMRMMFDSVRVYATAIYLGCVVIALICALWIHS 120

Query: 121 KILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           KILT+IA+I E+CALIWY+LSYIPFARR+VS +M R  DTEL
Sbjct: 121 KILTIIAIICEVCALIWYSLSYIPFARRIVSNLMIRLFDTEL 162

[Close]

BLAST of CmoCh16G000620 vs. NCBI nr
Match: gi|694321715|ref|XP_009352013.1| (PREDICTED: vesicle transport protein SFT2B [Pyrus x bretschneideri])

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-54
Identity = 110/162 (67.90%), Postives = 137/162 (84.57%), Query Frame = 1


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60
           MW   ++    D+EE G+SLLDE+SE L +L+  QR+Y F  C + G++ M LS++VFAK
Sbjct: 1   MWGKLNQSTLGDNEEGGESLLDEESEGLFNLSATQRMYAFAACFLAGMLCMFLSMIVFAK 60

Query: 61  PLKFAVLFTFGNVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHN 120
           P+KFAVLFTFGN+LAVGSTAFLFGP +Q+R+MFD+VR++ATAIYLGCVVL+LICAL I +
Sbjct: 61  PIKFAVLFTFGNLLAVGSTAFLFGPARQMRMMFDTVRVFATAIYLGCVVLALICALLIRS 120

Query: 121 KILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 163
           KILT+IA+I EICALIWY+LSYIPFARRMVSE+M R CDTEL
Sbjct: 121 KILTIIAIICEICALIWYSLSYIPFARRMVSELMIRLCDTEL 162

The following BLAST results are available for this feature:

BLAST of CmoCh16G000620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SFT2B_HUMAN	5.3e-17	39.04	Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1	[more]
SFT2B_MOUSE	3.4e-16	38.36	Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1	[more]
SFT2A_HUMAN	5.8e-16	42.25	Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1	[more]
SFT2A_RAT	3.8e-15	41.55	Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2 SV=1	[more]
SFT2A_MOUSE	8.4e-15	40.85	Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=1 SV=1	[more]

BLAST of CmoCh16G000620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC39_CUCSA	3.1e-64	83.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603050 PE=4 SV=1	[more]
A0A061G295_THECC	7.1e-53	67.28	Got1/Sft2-like vescicle transport protein family OS=Theobroma cacao GN=TCM_01538...	[more]
A0A0L9V0C8_PHAAN	1.2e-52	67.28	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g211500 PE=4 SV=1	[more]
A0A0S3RN16_PHAAN	1.2e-52	67.28	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G190300 PE=...	[more]
A0A059DEZ9_EUCGR	1.2e-52	66.05	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01469 PE=4 SV=1	[more]

BLAST of CmoCh16G000620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24170.1	1.5e-49	64.24	Got1/Sft2-like vescicle transport protein family	[more]
AT5G23550.1	6.4e-37	52.35	Got1/Sft2-like vescicle transport protein family	[more]

BLAST of CmoCh16G000620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082018\|ref\|XP_008441622.1\|	3.2e-70	88.27	PREDICTED: vesicle transport protein SFT2B [Cucumis melo]	[more]
gi\|449455944\|ref\|XP_004145710.1\|	4.4e-64	83.95	PREDICTED: vesicle transport protein SFT2B [Cucumis sativus]	[more]
gi\|1009122809\|ref\|XP_015878202.1\|	2.6e-56	69.14	PREDICTED: vesicle transport protein SFT2B [Ziziphus jujuba]	[more]
gi\|645258117\|ref\|XP_008234734.1\|	5.8e-56	67.90	PREDICTED: vesicle transport protein SFT2B [Prunus mume]	[more]
gi\|694321715\|ref\|XP_009352013.1\|	1.1e-54	67.90	PREDICTED: vesicle transport protein SFT2B [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007305	Vesicle_transpt_Got1/SFT2
IPR011691	Vesicle_transpt_SFT2

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006810	transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G000620.1	CmoCh16G000620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007305	Vesicle transport protein, Got1/SFT2-like	PFAM	PF04178	Got1	coord: 48..154 score: 5.1
IPR011691	Vesicle transport protein, SFT2-like	PANTHER	PTHR23137	UNCHARACTERIZED	coord: 18..162 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G000620	CmaCh18G013120	Cucurbita maxima (Rimu)	cmacmoB405
CmoCh16G000620	CmaCh16G000570	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G000620	Csa3G603050	Cucumber (Chinese Long) v2	cmocuB314
CmoCh16G000620	ClCG05G008850	Watermelon (Charleston Gray)	cmowcgB290
CmoCh16G000620	CSPI03G26450	Wild cucumber (PI 183967)	cmocpiB322
CmoCh16G000620	Lsi05G000920	Bottle gourd (USVL1VR-Ls)	cmolsiB307
CmoCh16G000620	Cp4.1LG14g06820	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G000620	Cp4.1LG09g00370	Cucurbita pepo (Zucchini)	cmocpeB303
CmoCh16G000620	MELO3C008483.2	Melon (DHL92) v3.6.1	cmomedB318
CmoCh16G000620	Cla97C05G091130	Watermelon (97103) v2	cmowmbB331
CmoCh16G000620	Bhi01G001103	Wax gourd	cmowgoB0435
CmoCh16G000620	CsGy3G024690	Cucumber (Gy14) v2	cgybcmoB308
CmoCh16G000620	Carg20346	Silver-seed gourd	carcmoB0730
CmoCh16G000620	Carg15070	Silver-seed gourd	carcmoB1326

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G000620	CmoCh18G013410	Cucurbita moschata (Rifu)	cmocmoB275

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G000620	Cucurbita moschata (Rifu)	cmocmoB236
CmoCh16G000620	Cucurbita moschata (Rifu)	cmocmoB281
CmoCh16G000620	Cucumber (Gy14) v1	cgycmoB0601
CmoCh16G000620	Cucurbita maxima (Rimu)	cmacmoB289
CmoCh16G000620	Cucurbita maxima (Rimu)	cmacmoB587
CmoCh16G000620	Wild cucumber (PI 183967)	cmocpiB337
CmoCh16G000620	Cucumber (Chinese Long) v2	cmocuB329
CmoCh16G000620	Melon (DHL92) v3.5.1	cmomeB275
CmoCh16G000620	Melon (DHL92) v3.5.1	cmomeB289
CmoCh16G000620	Watermelon (Charleston Gray)	cmowcgB282
CmoCh16G000620	Watermelon (97103) v1	cmowmB310
CmoCh16G000620	Watermelon (97103) v1	cmowmB312
CmoCh16G000620	Cucurbita pepo (Zucchini)	cmocpeB306
CmoCh16G000620	Cucurbita pepo (Zucchini)	cmocpeB322
CmoCh16G000620	Bottle gourd (USVL1VR-Ls)	cmolsiB286
CmoCh16G000620	Cucumber (Gy14) v2	cgybcmoB307
CmoCh16G000620	Cucumber (Gy14) v2	cgybcmoB594
CmoCh16G000620	Melon (DHL92) v3.6.1	cmomedB312
CmoCh16G000620	Melon (DHL92) v3.6.1	cmomedB334
CmoCh16G000620	Silver-seed gourd	carcmoB0692
CmoCh16G000620	Cucumber (Chinese Long) v3	cmocucB0374
CmoCh16G000620	Cucumber (Chinese Long) v3	cmocucB0398
CmoCh16G000620	Watermelon (97103) v2	cmowmbB307
CmoCh16G000620	Watermelon (97103) v2	cmowmbB328
CmoCh16G000620	Wax gourd	cmowgoB0424
CmoCh16G000620	Wax gourd	cmowgoB0440