CmoCh16G000240 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G000240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S acidic ribosomal protein P1-1
LocationCmo_Chr16 : 124713 .. 125803 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCAAATACTATCCTGGTATGCTCCGCTCCTCCAACTTCTGCGTTTCACAATCTTCCAATTCTCTCTCTCCATCGTTTTCTGCCCCTTCTGATTTTTCATTCTTTAAAATTCCTAGGTCCTCATTGCATACCAGACGCTACTCTAACCATGTCTAGTAGTGAGCTTGCCTGCGCCTACGCCGCCCTAGCTCTTTACGACGATGGGATTGCAATCACTGTACGAATGATTCTCTTTCTGTGTTTTTTTTTCTTCCTTTTTTGTACTGGTTGATGCGTGATTAATCTGAGTGTTGGGTCTAGGCGGATAAGATTGCTGCTGTAGTAGCAGCTGCGGGGCTCTGTGTGGAATCATACTGGCCCAGCCTGTTTGCAAAATTGGCAGAGAAGAGGGATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTGTCTGTTGCTGCTTCTGCCAGTGGTGCTTCCGCCTCTGCTGCTGCTCCTGCTGTTGAGGAAAAGAAGGTATGTTGGTGGTTTTTTTTAATGTCTGGGCTTTATCATAGTTTAGCGGTGGTTTTGATAGAATTGTTTCATCATGGTGCTCTGCCTCCGCTAGCTCTCATTATCTGTTAACTGTTGATATTCATTTAAGGCTCACCTTCATAATTCATATATACCCACATTTAATATTGATGAGCGTAGTTTGTACTTTGAATCGATCATATTGTTCCCATTTAGTTTCCTTAGCCTATCTTCCCCCCTTTTATTGTTCATTTAATCAAGCCCATTGTGCAGGAGGAGCCGAAGGAAGAGAGCGACGACGACATGGGGTTCAGTTTATTCGATTAGGAAGCTCTTTTATCCTACTATTCAATTGGATTAGAGAATTTTTGGGTTCATCTTCATTTTTCTCCGCTCAATTGTCTCTAGTGTTTTTTATTTAATAGTGTATTTATAGTTGTTTATTTGCCCTTCATGTACGATGGAAAATTTATTTGACTTACTTAACATTGCAGTAAGACTAAACCGTATGAGAGGAAATCTTTGAGGGTTAAACCCTGGAACAGCGTATTCTTTCTTTTTGATTTTAGATTATTT

mRNA sequence

CCTCCAAATACTATCCTGGTCCTCATTGCATACCAGACGCTACTCTAACCATGTCTAGTAGTGAGCTTGCCTGCGCCTACGCCGCCCTAGCTCTTTACGACGATGGGATTGCAATCACTGCGGATAAGATTGCTGCTGTAGTAGCAGCTGCGGGGCTCTGTGTGGAATCATACTGGCCCAGCCTGTTTGCAAAATTGGCAGAGAAGAGGGATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTGTCTGTTGCTGCTTCTGCCAGTGGTGCTTCCGCCTCTGCTGCTGCTCCTGCTGTTGAGGAAAAGAAGGAGGAGCCGAAGGAAGAGAGCGACGACGACATGGGGTTCAGTTTATTCGATTAGGAAGCTCTTTTATCCTACTATTCAATTGGATTAGAGAATTTTTGGGTTCATCTTCATTTTTCTCCGCTCAATTGTCTCTAGTGTTTTTTATTTAATAGTGTATTTATAGTTGTTTATTTGCCCTTCATGTACGATGGAAAATTTATTTGACTTACTTAACATTGCAGTAAGACTAAACCGTATGAGAGGAAATCTTTGAGGGTTAAACCCTGGAACAGCGTATTCTTTCTTTTTGATTTTAGATTATTT

Coding sequence (CDS)

ATGTCTAGTAGTGAGCTTGCCTGCGCCTACGCCGCCCTAGCTCTTTACGACGATGGGATTGCAATCACTGCGGATAAGATTGCTGCTGTAGTAGCAGCTGCGGGGCTCTGTGTGGAATCATACTGGCCCAGCCTGTTTGCAAAATTGGCAGAGAAGAGGGATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTGTCTGTTGCTGCTTCTGCCAGTGGTGCTTCCGCCTCTGCTGCTGCTCCTGCTGTTGAGGAAAAGAAGGAGGAGCCGAAGGAAGAGAGCGACGACGACATGGGGTTCAGTTTATTCGATTAG
Homology
[Close]
BLAST of CmoCh16G000240 vs. Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-33
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           M+S ELAC YAAL L DDGIAITA+KIA +V AA + VESYWP+LFAKL EKR++ DL+L
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           +VG GGGAA PV+ AA A GA A+AAAPAVEEKKEE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGGAA-PVAAAAPAGGA-AAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]
BLAST of CmoCh16G000240 vs. Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-30
Identity = 72/108 (66.67%), Postives = 88/108 (81.48%), Query Frame = 1 

Query: 5   ELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGC 64
           ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG 
Sbjct: 6   ELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 65  GGGAAAPVSVAASASGASASAAAPAVEE-KKEEPKEESDDDMGFSLFD 112
           GGG  APV+ AA A+G  A+AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 66  GGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]
BLAST of CmoCh16G000240 vs. Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 8.3e-30
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = 1 

Query: 5   ELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGC 64
           ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG 
Sbjct: 6   ELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 65  GGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           GGG  APV+ AA A+G  A+AA  A E+KK+EP EESD D+GF LFD
Sbjct: 66  GGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]
BLAST of CmoCh16G000240 vs. Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-29
Identity = 71/108 (65.74%), Postives = 87/108 (80.56%), Query Frame = 1 

Query: 5   ELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGC 64
           ELAC+YA + L D+GIAIT+DKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG 
Sbjct: 6   ELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 65  -GGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
            GGG  APVS AA A+   A+AAAPA EEKK+EP EESD D+GF LFD
Sbjct: 66  GGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]
BLAST of CmoCh16G000240 vs. Swiss-Prot
Match: RLA1_ASPFU (60S acidic ribosomal protein P1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_1G06830 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-25
Identity = 71/112 (63.39%), Postives = 84/112 (75.00%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLC-VESYWPSLFAKLAEKRDIGDLL 60
           MS++ELAC+YAAL L DDG+ ITADKI  ++ AA +  VE  W SLFAK  E +DI DLL
Sbjct: 1   MSTAELACSYAALILADDGVEITADKIQTLLGAAKVADVEPIWTSLFAKALEGKDIKDLL 60

Query: 61  LNVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
            NVG  GGAAAP +V  +A+GA+A A A A EEKKEE KEESD+DMGF LFD
Sbjct: 61  TNVG-SGGAAAPAAVGGAAAGAAAPAEAAAAEEKKEEEKEESDEDMGFGLFD 111

[Close]
BLAST of CmoCh16G000240 vs. TrEMBL
Match: A0A0A0LTV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000010 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-40
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS+SELACAYAALAL+DDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAA V+VAA  + A   AAAPA+EEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAASVAVAAPTASA---AAAPAIEEKREEPKEESDDDMGFSLFD 108

[Close]
BLAST of CmoCh16G000240 vs. TrEMBL
Match: A0A059DF41_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-33
Identity = 85/112 (75.89%), Postives = 97/112 (86.61%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS+ ELAC YA L L+DDGI IT +KIA++V AA + VESYWPSLFAKLAEKR++GDL++
Sbjct: 1   MSAGELACTYATLILHDDGIPITGEKIASLVKAANVSVESYWPSLFAKLAEKRNVGDLIM 60

Query: 61  NVGCGGGAAAPVSVAASASGASAS-AAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVG GGG AAPV+VAA A GA+ S AAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGSGGG-AAPVAVAAPAGGAAGSAAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]
BLAST of CmoCh16G000240 vs. TrEMBL
Match: A0A068U9L3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019886001 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-33
Identity = 83/113 (73.45%), Postives = 94/113 (83.19%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS  EL C YA+L L+DDGI +TA+KIA +V AA L VESYWPSLFAKL EKR+I DL++
Sbjct: 1   MSVGELGCTYASLILHDDGIPVTAEKIATLVKAANLTVESYWPSLFAKLCEKRNIDDLIV 60

Query: 61  NVGCGGGAAAPVSVAAS--ASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGG AAP +VAAS  A GA+ +AAAPA EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGGAAPAAVAASAGAGGAAPAAAAPAAEEKKEEPKEESDDDMGFSLFD 113

[Close]
BLAST of CmoCh16G000240 vs. TrEMBL
Match: B9SEJ7_RICCO (60S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_0969300 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-33
Identity = 81/111 (72.97%), Postives = 97/111 (87.39%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           M++ ELAC YA L L+DDGI +T++KIA +V AA + VESYWPSLFAKLAEK++I DL++
Sbjct: 1   MAAGELACTYATLILHDDGIPVTSEKIATLVKAANVAVESYWPSLFAKLAEKKNIDDLVM 60

Query: 61  NVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVG GGG AAPV+V+A A+GA A+AAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGSGGG-AAPVAVSAPAAGAGAAAAAPAVEEKKEEPKEESDDDMGFSLFD 110

[Close]
BLAST of CmoCh16G000240 vs. TrEMBL
Match: A0A059C2A0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00482 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.6e-33
Identity = 82/111 (73.87%), Postives = 95/111 (85.59%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS+ ELAC YA L L+DDGI +TA+KIAA+V +A + VESYWP LFAKLAEKR++GDL+ 
Sbjct: 76  MSAGELACTYAVLILHDDGIPVTAEKIAALVKSANVSVESYWPGLFAKLAEKRNVGDLIT 135

Query: 61  NVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVG GGGAAA V+VAA A GA+ +AAAPA EEKKEEPKEESDDDMGFSLFD
Sbjct: 136 NVGSGGGAAA-VAVAAPAGGAAPAAAAPAAEEKKEEPKEESDDDMGFSLFD 185

[Close]
BLAST of CmoCh16G000240 vs. TAIR10
Match: AT5G47700.1 (AT5G47700.1 60S acidic ribosomal protein family)

HSP 1 Score: 133.7 bits (335), Expect = 7.2e-32
Identity = 72/108 (66.67%), Postives = 88/108 (81.48%), Query Frame = 1 

Query: 5   ELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGC 64
           ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG 
Sbjct: 6   ELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 65  GGGAAAPVSVAASASGASASAAAPAVEE-KKEEPKEESDDDMGFSLFD 112
           GGG  APV+ AA A+G  A+AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 66  GGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]
BLAST of CmoCh16G000240 vs. TAIR10
Match: AT1G01100.1 (AT1G01100.1 60S acidic ribosomal protein family)

HSP 1 Score: 131.0 bits (328), Expect = 4.7e-31
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = 1 

Query: 5   ELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGC 64
           ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG 
Sbjct: 6   ELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 65  GGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           GGG  APV+ AA A+G  A+AA  A E+KK+EP EESD D+GF LFD
Sbjct: 66  GGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]
BLAST of CmoCh16G000240 vs. TAIR10
Match: AT4G00810.1 (AT4G00810.1 60S acidic ribosomal protein family)

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-30
Identity = 71/108 (65.74%), Postives = 87/108 (80.56%), Query Frame = 1 

Query: 5   ELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGC 64
           ELAC+YA + L D+GIAIT+DKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG 
Sbjct: 6   ELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65

Query: 65  -GGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
            GGG  APVS AA A+   A+AAAPA EEKK+EP EESD D+GF LFD
Sbjct: 66  GGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]
BLAST of CmoCh16G000240 vs. TAIR10
Match: AT5G24510.1 (AT5G24510.1 60S acidic ribosomal protein family)

HSP 1 Score: 104.8 bits (260), Expect = 3.6e-23
Identity = 69/115 (60.00%), Postives = 82/115 (71.30%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS+SELAC YAAL L+DDGI ITA+ I+ +V  A + VESYWPSLFAKL EK++I DL++
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61  NVGCGG-GAAAPVSVAASASGASASAAAPAVEEKKEEP---KEESDDDMGFSLFD 112
           NVG GG G A PV+ AA    AS S + P  EEKK E    KEES+DDM   LFD
Sbjct: 61  NVGAGGCGVARPVTTAAPT--ASQSVSIP--EEKKNEMEVIKEESEDDMIIGLFD 111

[Close]
BLAST of CmoCh16G000240 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family)

HSP 1 Score: 51.2 bits (121), Expect = 4.7e-07
Identity = 43/96 (44.79%), Postives = 53/96 (55.21%), Query Frame = 1 

Query: 23  TADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDL-------LLNVGCGGGAAAPVSVA 82
           +AD I  ++ A G  V+     L  K    +DI +L       L +V  GGG A  VS A
Sbjct: 19  SADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGGGVA--VSAA 78

Query: 83  ASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
            S+ G  A+A A   E KKEE KEESDDDMGFSLF+
Sbjct: 79  PSSGGGGAAAPAEKKEAKKEE-KEESDDDMGFSLFE 111

[Close]
BLAST of CmoCh16G000240 vs. NCBI nr
Match: gi|659111169|ref|XP_008455614.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-40
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS+SELACAYAALAL+DDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAAPV+VAA  + A   AAA A+EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPTASA---AAASAIEEKKEEPKEESDDDMGFSLFD 108

[Close]
BLAST of CmoCh16G000240 vs. NCBI nr
Match: gi|778655173|ref|XP_004138012.2| (PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-40
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS+SELACAYAALAL+DDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAA V+VAA  + A   AAAPA+EEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAASVAVAAPTASA---AAAPAIEEKREEPKEESDDDMGFSLFD 108

[Close]
BLAST of CmoCh16G000240 vs. NCBI nr
Match: gi|657969014|ref|XP_008376223.1| (PREDICTED: 60S acidic ribosomal protein P1 [Malus domestica])

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 84/111 (75.68%), Postives = 93/111 (83.78%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS SE+AC YAAL L+DDGI ITA+KIA VV AA + VESYWP LFAKLAEKR+I DL+L
Sbjct: 1   MSISEIACTYAALILHDDGIPITAEKIATVVKAABITVESYWPGLFAKLAEKRNIEDLIL 60

Query: 61  NVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVG GGG AA    A+ ASGA+ +AAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGGAAVAVAASGASGAAPAAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]
BLAST of CmoCh16G000240 vs. NCBI nr
Match: gi|702242623|ref|XP_010048528.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Eucalyptus grandis])

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-33
Identity = 85/112 (75.89%), Postives = 97/112 (86.61%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS+ ELAC YA L L+DDGI IT +KIA++V AA + VESYWPSLFAKLAEKR++GDL++
Sbjct: 1   MSAGELACTYATLILHDDGIPITGEKIASLVKAANVSVESYWPSLFAKLAEKRNVGDLIM 60

Query: 61  NVGCGGGAAAPVSVAASASGASAS-AAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVG GGG AAPV+VAA A GA+ S AAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGSGGG-AAPVAVAAPAGGAAGSAAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]
BLAST of CmoCh16G000240 vs. NCBI nr
Match: gi|661891110|emb|CDP04992.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-33
Identity = 83/113 (73.45%), Postives = 94/113 (83.19%), Query Frame = 1 

Query: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS  EL C YA+L L+DDGI +TA+KIA +V AA L VESYWPSLFAKL EKR+I DL++
Sbjct: 1   MSVGELGCTYASLILHDDGIPVTAEKIATLVKAANLTVESYWPSLFAKLCEKRNIDDLIV 60

Query: 61  NVGCGGGAAAPVSVAAS--ASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGG AAP +VAAS  A GA+ +AAAPA EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGGAAPAAVAASAGAGGAAPAAAAPAAEEKKEEPKEESDDDMGFSLFD 113

The following BLAST results are available for this feature:
BLAST of CmoCh16G000240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLA1_MAIZE4.7e-3374.7760S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1[more]
RLA13_ARATH1.3e-3066.6760S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2[more]
RLA11_ARATH8.3e-3064.4960S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2[more]
RLA12_ARATH2.4e-2965.7460S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2[more]
RLA1_ASPFU2.8e-2563.3960S acidic ribosomal protein P1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / ... [more]
BLAST of CmoCh16G000240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTV1_CUCSA1.6e-4086.49Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000010 PE=3 SV=1[more]
A0A059DF41_EUCGR1.5e-3375.89Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1[more]
A0A068U9L3_COFCA1.5e-3373.45Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019886001 PE=3 SV=1[more]
B9SEJ7_RICCO3.3e-3372.9760S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_0969300 PE... [more]
A0A059C2A0_EUCGR5.6e-3373.87Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00482 PE=3 SV=1[more]
BLAST of CmoCh16G000240 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47700.17.2e-3266.67 60S acidic ribosomal protein family[more]
AT1G01100.14.7e-3164.49 60S acidic ribosomal protein family[more]
AT4G00810.11.4e-3065.74 60S acidic ribosomal protein family[more]
AT5G24510.13.6e-2360.00 60S acidic ribosomal protein family[more]
AT3G44590.24.7e-0744.79 60S acidic ribosomal protein family[more]
BLAST of CmoCh16G000240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111169|ref|XP_008455614.1|1.0e-4087.39PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo][more]
gi|778655173|ref|XP_004138012.2|2.3e-4086.49PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus][more]
gi|657969014|ref|XP_008376223.1|1.6e-3375.68PREDICTED: 60S acidic ribosomal protein P1 [Malus domestica][more]
gi|702242623|ref|XP_010048528.1|2.1e-3375.89PREDICTED: 60S acidic ribosomal protein P1-like [Eucalyptus grandis][more]
gi|661891110|emb|CDP04992.1|2.1e-3373.45unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G000240.1CmoCh16G000240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027534Ribosomal protein L12 familyHAMAPMF_01478Ribosomal_L12_archcoord: 6..111
score: 14
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 1..111
score: 5.6
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 22..110
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G000240CmaCh16G000200Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G000240CmaCh18G013410Cucurbita maxima (Rimu)cmacmoB405
CmoCh16G000240Cp4.1LG09g00100Cucurbita pepo (Zucchini)cmocpeB303
CmoCh16G000240CsaV3_5G000080Cucumber (Chinese Long) v3cmocucB0398
CmoCh16G000240Carg20315Silver-seed gourdcarcmoB0730
CmoCh16G000240Carg15039Silver-seed gourdcarcmoB1326
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G000240CmoCh18G013750Cucurbita moschata (Rifu)cmocmoB275
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G000240Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G000240Bottle gourd (USVL1VR-Ls)cmolsiB319
CmoCh16G000240Cucumber (Chinese Long) v3cmocucB0392
CmoCh16G000240Cucumber (Gy14) v1cgycmoB0751
CmoCh16G000240Wild cucumber (PI 183967)cmocpiB335