Carg15039 (gene) Silver-seed gourd

Overview
NameCarg15039
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S acidic ribosomal protein P1-like
LocationCucurbita_argyrosperma_scaffold_078 : 246658 .. 247579 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTCCATAATATATGGCCATACTTCCACCTATGGTGATCGATCACTCTACACGCATTTCCCTCCAAATACCATCCTGGTATGCTCTGCTCTGCTCCTCCAACTTCTGCGTTTCACAATCTTCCAATTCTCTCTCTCCATCGTTTTCTGCCCCTTCTGATTTTTCATTCTTTAAAATTCCTAGGTCCTCATTGCATACCAGACGCTACTCTAACCATGTCTAGTAGTGAGCTTGCCTGCGCCTACGCCGCCCTAGCTCTTTACGACGATGGGATTGCAATCGCTGTACGAATGATTCTCTTTCTGTGTTTTTTTTTTTTTTTTTTCTTTTTCCCTTTTTTGTATTGGTTGATGCGTGATTAATCTGAGTGTTGGGTCTAGGCGGATAAGATTGCTGCTGTAGTAGCAGCTGCGGGGCTCTGTGTGGAATCATACTGGCCCAGCCTGTTTGCAAAATTGGCAGAGAAGAGGGATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTGTCTGTTGCTGCTTCTGCCAGTGGTGCTTCCGCCTCTGCTGCTGCTCCTGCTTTTGAGGAAAAGAAGGTATGTTGGTGATTTCTTTTTTAATGTCTGGGCTTTATCATAGTTTAGCGGTGGTTTTGATAGAATTGTTTCATCATGGTGCTCTGCCTCTGCTAGCTCTCATTATCTGTTAACTGTTGATATTCATTTAAGGGTCACCTTCATAATTCATATATACCCACATTTAATATTGATGAGCGTAGTTTGTACTTTGAATCGATCATATTGTTCCCGTTTAGTTTCCTTAGCCTATCTTCCCCCCTTTTATTGTTCATTTAATCAAGCCCATTGTGCAGGAGGAGCCGAAGGAAGAGAGCGACGACGACATGGGATTCAGTTTATTCGATTAG

mRNA sequence

CGTTCCATAATATATGGCCATACTTCCACCTATGGTGATCGATCACTCTACACGCATTTCCCTCCAAATACCATCCTGGTCCTCATTGCATACCAGACGCTACTCTAACCATGTCTAGTAGTGAGCTTGCCTGCGCCTACGCCGCCCTAGCTCTTTACGACGATGGGATTGCAATCGCTGCGGATAAGATTGCTGCTGTAGTAGCAGCTGCGGGGCTCTGTGTGGAATCATACTGGCCCAGCCTGTTTGCAAAATTGGCAGAGAAGAGGGATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTGTCTGTTGCTGCTTCTGCCAGTGGTGCTTCCGCCTCTGCTGCTGCTCCTGCTTTTGAGGAAAAGAAGGAGGAGCCGAAGGAAGAGAGCGACGACGACATGGGATTCAGTTTATTCGATTAG

Coding sequence (CDS)

ATGTCTAGTAGTGAGCTTGCCTGCGCCTACGCCGCCCTAGCTCTTTACGACGATGGGATTGCAATCGCTGCGGATAAGATTGCTGCTGTAGTAGCAGCTGCGGGGCTCTGTGTGGAATCATACTGGCCCAGCCTGTTTGCAAAATTGGCAGAGAAGAGGGATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTGTCTGTTGCTGCTTCTGCCAGTGGTGCTTCCGCCTCTGCTGCTGCTCCTGCTTTTGAGGAAAAGAAGGAGGAGCCGAAGGAAGAGAGCGACGACGACATGGGATTCAGTTTATTCGATTAG

Protein sequence

MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAPVSVAASASGASASAAAPAFEEKKEEPKEESDDDMGFSLFD
Homology
[Close]
BLAST of Carg15039 vs. NCBI nr
Match: XP_022922611.1 (60S acidic ribosomal protein P1 [Cucurbita moschata])

HSP 1 Score: 122.5 bits (306), Expect = 9.2e-25
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MSSSELACAYAALALYDDGIAI ADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 1  MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61 NVGC 65
          NVGC
Sbjct: 61 NVGC 64

[Close]
BLAST of Carg15039 vs. NCBI nr
Match: XP_023551718.1 (60S acidic ribosomal protein P1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 9.2e-25
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MSSSELACAYAALALYDDGIAI ADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 27 MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 86

Query: 61 NVGC 65
          NVGC
Sbjct: 87 NVGC 90

[Close]
BLAST of Carg15039 vs. NCBI nr
Match: XP_022984373.1 (60S acidic ribosomal protein P1 [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 3.5e-24
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MS SELACAYAALALYDDGIAI ADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 27 MSRSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 86

Query: 61 NVGC 65
          NVGC
Sbjct: 87 NVGC 90

[Close]
BLAST of Carg15039 vs. NCBI nr
Match: XP_022945965.1 (60S acidic ribosomal protein P1-like [Cucurbita moschata] >XP_023541270.1 60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 7.8e-24
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MS+SELACAYAALAL+DDGIAI ADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61 NVGC 65
          NVGC
Sbjct: 61 NVGC 64

[Close]
BLAST of Carg15039 vs. NCBI nr
Match: XP_022968593.1 (60S acidic ribosomal protein P1-like [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 2.3e-23
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MS+SEL CAYAALAL+DDGIAI ADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 1  MSTSELVCAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61 NVGC 65
          NVGC
Sbjct: 61 NVGC 64

[Close]
BLAST of Carg15039 vs. TAIR10
Match: AT1G01100.1 (60S acidic ribosomal protein family)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 5  ELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVG 64
          ELAC+YA + L D+GIAI ADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG
Sbjct: 6  ELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVG 64

[Close]
BLAST of Carg15039 vs. TAIR10
Match: AT5G47700.1 (60S acidic ribosomal protein family)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 5  ELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVG 64
          ELAC+YA + L D+GIAI ADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG
Sbjct: 6  ELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVG 64

[Close]
BLAST of Carg15039 vs. TAIR10
Match: AT5G24510.1 (60S acidic ribosomal protein family)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MS+SELAC YAAL L+DDGI I A+ I+ +V  A + VESYWPSLFAKL EK++I DL++
Sbjct: 1  MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61 NVG 64
          NVG
Sbjct: 61 NVG 63

[Close]
BLAST of Carg15039 vs. TAIR10
Match: AT4G00810.1 (60S acidic ribosomal protein family)

HSP 1 Score: 80.5 bits (197), Expect = 7.2e-16
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 5  ELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVG 64
          ELAC+YA + L D+GIAI +DKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG
Sbjct: 6  ELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVG 64

[Close]
BLAST of Carg15039 vs. Swiss-Prot
Match: sp|P52855|RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.3e-16
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          M+S ELAC YAAL L DDGIAI A+KIA +V AA + VESYWP+LFAKL EKR++ DL+L
Sbjct: 1  MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61 NVG 64
          +VG
Sbjct: 61 SVG 63

[Close]
BLAST of Carg15039 vs. Swiss-Prot
Match: sp|Q8LCW9|RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 5  ELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVG 64
          ELAC+YA + L D+GIAI ADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG
Sbjct: 6  ELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVG 64

[Close]
BLAST of Carg15039 vs. Swiss-Prot
Match: sp|Q8LEQ0|RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 5  ELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVG 64
          ELAC+YA + L D+GIAI ADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG
Sbjct: 6  ELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVG 64

[Close]
BLAST of Carg15039 vs. Swiss-Prot
Match: sp|O23095|RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-14
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 5  ELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVG 64
          ELAC+YA + L D+GIAI +DKIA +V AAG+ +ESYWP LFAK+AEKR++ DL++NVG
Sbjct: 6  ELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVG 64

[Close]
BLAST of Carg15039 vs. Swiss-Prot
Match: sp|P29763|RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-13
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MS+SELAC YAAL L+DDG+ I AD I  +  AAG+ VE YWP+LFAKL  K+ + DL+ 
Sbjct: 1  MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61 NVG 64
          NVG
Sbjct: 61 NVG 63

[Close]
BLAST of Carg15039 vs. TrEMBL
Match: tr|A0A1S4E0L6|A0A1S4E0L6_CUCME (60S acidic ribosomal protein P1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495745 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.7e-23
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MS+SELACAYAALAL+DDGIAI A+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGC 65
          NVGC
Sbjct: 61 NVGC 64

[Close]
BLAST of Carg15039 vs. TrEMBL
Match: tr|A0A1S3C0X1|A0A1S3C0X1_CUCME (60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495745 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.7e-23
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MS+SELACAYAALAL+DDGIAI A+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGC 65
          NVGC
Sbjct: 61 NVGC 64

[Close]
BLAST of Carg15039 vs. TrEMBL
Match: tr|A0A0A0LTV1|A0A0A0LTV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000010 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.7e-23
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MS+SELACAYAALAL+DDGIAI A+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGC 65
          NVGC
Sbjct: 61 NVGC 64

[Close]
BLAST of Carg15039 vs. TrEMBL
Match: tr|A0A2N9IW14|A0A2N9IW14_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56215 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.9e-16
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MS+ ELAC+YAAL L+DDGIAI ++KIA+VV AAG+ VESYWPSLFAKLAEKR++ DL+L
Sbjct: 1  MSTGELACSYAALLLHDDGIAITSEKIASVVKAAGVAVESYWPSLFAKLAEKRNLEDLIL 60

Query: 61 NVG 64
          N G
Sbjct: 61 NAG 63

[Close]
BLAST of Carg15039 vs. TrEMBL
Match: tr|A0A2I4HSP5|A0A2I4HSP5_9ROSI (60S acidic ribosomal protein P1-like OS=Juglans regia OX=51240 GN=LOC109021080 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.7e-16
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 1  MSSSELACAYAALALYDDGIAIAADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
          MSSSELAC YA+L L+DDGI I A+KIA +V AAG+ VESYWPSLFAKLAEKR+I DL+L
Sbjct: 1  MSSSELACTYASLILHDDGIPITAEKIATLVKAAGVSVESYWPSLFAKLAEKRNIEDLIL 60

Query: 61 NVG 64
          N G
Sbjct: 61 NAG 63

The following BLAST results are available for this feature:
BLAST of Carg15039 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922611.19.2e-2598.4460S acidic ribosomal protein P1 [Cucurbita moschata][more]
XP_023551718.19.2e-2598.4460S acidic ribosomal protein P1 [Cucurbita pepo subsp. pepo][more]
XP_022984373.13.5e-2496.8860S acidic ribosomal protein P1 [Cucurbita maxima][more]
XP_022945965.17.8e-2495.3160S acidic ribosomal protein P1-like [Cucurbita moschata] >XP_023541270.1 60S ac... [more]
XP_022968593.12.3e-2393.7560S acidic ribosomal protein P1-like [Cucurbita maxima][more]
BLAST of Carg15039 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G01100.11.5e-1666.1060S acidic ribosomal protein family[more]
AT5G47700.11.5e-1666.1060S acidic ribosomal protein family[more]
AT5G24510.11.5e-1665.0860S acidic ribosomal protein family[more]
AT4G00810.17.2e-1664.4160S acidic ribosomal protein family[more]
BLAST of Carg15039 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P52855|RLA1_MAIZE5.3e-1668.2560S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1[more]
sp|Q8LCW9|RLA11_ARATH2.6e-1566.1060S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ... [more]
sp|Q8LEQ0|RLA13_ARATH2.6e-1566.1060S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ... [more]
sp|O23095|RLA12_ARATH1.3e-1464.4160S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ... [more]
sp|P29763|RLA1_CHLRE1.9e-1360.3260S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1[more]
BLAST of Carg15039 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E0L6|A0A1S4E0L6_CUCME5.7e-2392.1960S acidic ribosomal protein P1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3C0X1|A0A1S3C0X1_CUCME5.7e-2392.1960S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LTV1|A0A0A0LTV1_CUCSA5.7e-2392.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000010 PE=3 SV=1[more]
tr|A0A2N9IW14|A0A2N9IW14_FAGSY3.9e-1673.02Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56215 PE=3 SV=1[more]
tr|A0A2I4HSP5|A0A2I4HSP5_9ROSI6.7e-1674.6060S acidic ribosomal protein P1-like OS=Juglans regia OX=51240 GN=LOC109021080 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
IPR038716P1/P2_N_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15039-RACarg15039-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038716Ribosomal protein P1/P2, N-terminal domainGENE3DG3DSA:1.10.10.1410coord: 1..63
e-value: 2.7E-25
score: 89.9
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 22..110
e-value: 3.7E-22
score: 78.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..111
NoneNo IPR availablePANTHERPTHR21141:SF5960S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATEDcoord: 1..111
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 1..111
IPR027534Ribosomal protein L12 familyHAMAPMF_01478Ribosomal_L12_archcoord: 6..111
score: 13.982

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15039CmaCh16G000200Cucurbita maxima (Rimu)carcmaB1366
Carg15039CmaCh18G013410Cucurbita maxima (Rimu)carcmaB1368
Carg15039CmoCh16G000240Cucurbita moschata (Rifu)carcmoB1326
Carg15039CmoCh18G013750Cucurbita moschata (Rifu)carcmoB1328
Carg15039Cp4.1LG09g00100Cucurbita pepo (Zucchini)carcpeB1373
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg15039Carg20315Silver-seed gourdcarcarB503
The following block(s) are covering this gene:
GeneOrganismBlock
Carg15039Cucumber (Gy14) v1carcgyB1108
Carg15039Cucurbita pepo (Zucchini)carcpeB1376
Carg15039Wild cucumber (PI 183967)carcpiB1028
Carg15039Cucumber (Chinese Long) v3carcucB1034
Carg15039Bottle gourd (USVL1VR-Ls)carlsiB905